Non-Coding RNA Search

Ss1.1-Pig4-TMW8063J23.3

Sequence:


               
               CCGCGGTCGCAGCTCGAGCCGCAGCCTCTGCGCCGCCACCGTCGCCGCCTCAGCCGCTCG
CTTCGTGGGTCGGTCCCTCCGGCACACGGGCTCCAGCCGCGTCGCAGCCGTCCCCTGAGC
CCCTCAGGCCGCCCCGGTCTCCTTGCCCGGCCCGACCCAGCCCGTGAAGATGGTGGACCG
CGAGCAACTGGTGCAGAAAGCCCGGCTGGCGGAGCAGGCGGAGCGCTACGACGACATGGC
CGCGGCCATGAAGAACGTGACAGAGCTGAATGAGCCACTGTCCAATGAAGAAAGAAACCT
TCTCTCTGTGGCTTACAAGAATGTAGTCGGGGCGCGCCGTTCTTCCTGGAGGGTCATTAG
TAGCATTGAGCAGAAGACCTCTGCAGATGGCAATGAGAAGAAGATAGAGATGGTCCGTGC
TTACCGTGAAAAAATAGAGAAGGAGTTGGAGGCCGTATGTCAGGATGTGCTGAGCCTGCT
GGATAACTACCTGATCAAGAATTGCAGCGAGACCCAGTATGAGAGCAAAGTGTTCTACCT
GAAGATGAAAGGGGACTATTACCGCTACCTGGCCGAAGTAGCCACTGGAGAGAAGAGGGC
GACCGTCGTGGAGTCGTCTGAGAAGGCCTATAGCGAAGCCCATGAGATCAGCAAGGAGCA
CATGCAGCCCACTCACCCCATTAGATTAGGCCTGGCCCTTAACTACTCCGTTTTCTACTA
TGAGATCCAGAACGCCCCGGAGCAAGCCTGCCACTTGGCCAAGACCGCTTTCGATGACGC
CATCGCCGAGCTTGACACCCTCAACGAGGACTCCTACAAGGACTCCACGCTCATCATGCA
GCTCCTCCGCGACAACCTCACGCTCTGGACAAGCGATCAGCAAGACGACGACGGTGGAGA
AGGCAACAATTAAGGCCCCAGGTGGACTGGCAGCGCACGCTGATGCTACTACTGCAGTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGCGGTCGCAGCTCGAGCCGCAGCCTCTGCGCCGCCACCGTCGCCGCCTCAGCCGCTCG
CTTCGTGGGTCGGTCCCTCCGGCACACGGGCTCCAGCCGCGTCGCAGCCGTCCCCTGAGC
CCCTCAGGCCGCCCCGGTCTCCTTGCCCGGCCCGACCCAGCCCGTGAAGATGGTGGACCG
CGAGCAACTGGTGCAGAAAGCCCGGCTGGCGGAGCAGGCGGAGCGCTACGACGACATGGC
CGCGGCCATGAAGAACGTGACAGAGCTGAATGAGCCACTGTCCAATGAAGAAAGAAACCT
TCTCTCTGTGGCTTACAAGAATGTAGTCGGGGCGCGCCGTTCTTCCTGGAGGGTCATTAG
TAGCATTGAGCAGAAGACCTCTGCAGATGGCAATGAGAAGAAGATAGAGATGGTCCGTGC
TTACCGTGAAAAAATAGAGAAGGAGTTGGAGGCCGTATGTCAGGATGTGCTGAGCCTGCT
GGATAACTACCTGATCAAGAATTGCAGCGAGACCCAGTATGAGAGCAAAGTGTTCTACCT
GAAGATGAAAGGGGACTATTACCGCTACCTGGCCGAAGTAGCCACTGGAGAGAAGAGGGC
GACCGTCGTGGAGTCGTCTGAGAAGGCCTATAGCGAAGCCCATGAGATCAGCAAGGAGCA
CATGCAGCCCACTCACCCCATTAGATTAGGCCTGGCCCTTAACTACTCCGTTTTCTACTA
TGAGATCCAGAACGCCCCGGAGCAAGCCTGCCACTTGGCCAAGACCGCTTTCGATGACGC
CATCGCCGAGCTTGACACCCTCAACGAGGACTCCTACAAGGACTCCACGCTCATCATGCA
GCTCCTCCGCGACAACCTCACGCTCTGGACAAGCGATCAGCAAGACGACGACGGTGGAGA
AGGCAACAATTAAGGCCCCAGGTGGACTGGCAGCGCACGCTGATGCTACTACTGCAGTCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5RC20_PONPY

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5RC20_PONPY

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               196-315, - strand, RNAz p=0.511235

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               196-315, - strand, RNAz p=0.511235

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               75-459, gnl|bosTau2|chr11 (68309229-68309609)
               

               
               75-459, gnl|Hg17|chr2 (9721314-9720899)
               

               
               75-459, gnl|Mm7|chr12 (19776588-19776216)
               


               
               521-870, gnl|bosTau2|chr16 (824932-824584)
               

               
               521-870, gnl|Hg17|chr2 (127031636-127031289)
               

               
               521-870, gnl|Mm7|chr3 (92795799-92796148)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               75-459, gnl|bosTau2|chr11 (68309229-68309609)
               

               
               75-459, gnl|Hg17|chr2 (9721314-9720899)
               

               
               75-459, gnl|Mm7|chr12 (19776588-19776216)
               


               
               521-870, gnl|bosTau2|chr16 (824932-824584)
               

               
               521-870, gnl|Hg17|chr2 (127031636-127031289)
               

               
               521-870, gnl|Mm7|chr3 (92795799-92796148)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               nlu (0.191681)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               cty (0.10408)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               cty (0.10408)

	75-459, gnl\|bosTau2\|chr11 (68309229-68309609)
	75-459, gnl\|Hg17\|chr2 (9721314-9720899)
	75-459, gnl\|Mm7\|chr12 (19776588-19776216)

	521-870, gnl\|bosTau2\|chr16 (824932-824584)
	521-870, gnl\|Hg17\|chr2 (127031636-127031289)
	521-870, gnl\|Mm7\|chr3 (92795799-92796148)

	nlu (0.191681)
	ste (0.135208)
	pla (0.133672)
	nmm (0.132802)
	cov (0.132153)
	cty (0.10408)