Non-Coding RNA Search

Ss1.1-Pig4-TMW8063K16.3

Sequence:


               
               GGTAAGATAACTAACTATGCGTAAGGCAACTTGGAAAGGTGGGTTTTTTTTTTAGCTTGG
TAGCTTTAATTTCCTGCCATCCTACAAACAGGTAGGCTGTGGAGTACTGTTCCATTTTGT
GTCCTTTGCTCCCAGACCTTTCCCAAGTGGGAGCATCAGCATTTGGCTGCCACAATCTTA
TGATGGTTTAGGCAGTTTTGCTGGTTCTAGCTTATCTCTAGAGGCCAGGCTGTGTCAGAA
GCTAAGCACAAATGAGCTATGCTTCAATACAGGAGCAGAGAATATGCAGGACTCCAGATA
GGAAGCTTTTAAGATTCACACCGGCATAGAAGACTTTTCCTTCCGTTTACAGCCTAAAAT
GGTTCTGGCCTACCCTGTCCCATCTGCATGGCCTAAAAAACAGCCTTTTTCCAAAAGGCC
TTGAGGCAGATTTAGAAATTATATAGCATCATAAACCTGACCCTCCATACCAAAGATGCC
CTGGTGCTGCTGCTGGTGAGACTGGTGCCCAAGGAGGGGCCAGCAAGAATCTCCAGCCTG
CTGTCTACCAAAGGAGCTGCCCGATTTGGGTGCTCTTTTCAAACCCTGCCCTCAGACCTC
CCCTTAATAGAATTAGCTTCTCGTTCCAAGGCTTTGGGCCTGTTTCAGAGCCCCTGAAGT
TTGCAGTATGTTTTCACATAAAATGTTCTACTTTTATTCAGGAAGCAAATTTTTTGAGTG
CCTATATGAGACAGTGTGCTGAGCTGGTCAAAGTCTTGATGCTCTTATTGCAGGGGATTG
TGGGTCCTAGATGCCAGTACTCTGCTGAGGCCAGTGGAGGGCGTCAGCTCATTGCCCACC
ACCTCTGATTAGCCAGTTAGCAGCTGTTGACCCAGGAAGAGGAAGTATGGTCTTTAAAAA
AATATAAACAGGATGTTTTAGATTCTCCCCTAAAACTAGTTAGGAAAAATTGCCTATCCA
GATCACTCTAGTCCCTCTTGGAGCCTGGTGTTTTCATATTTTCTTTGGAAGTGAGTTTTG
TGTCATGGAGTGTGAATAGTGAGATTTGCTTTGGGGCCTGTGGTTGGGAGCCCAGAGCTT
CCTTTGGAGGGGTTGTGGGGGACTAGCCCCTGAGATGAAGTTCCAGAGAGTTGGCCAGAC
TTCACCTCCACCCTCTTGCCCCTGGTGTAGCTGCCTCACATGGGGTTCTTGCAAGAGCTC
CCCTTGCAAGACCCTTTGGGGGTTGCTCTGCTGCCCTCAAGAATAAAAGCCTCTATGATC
CAGAGTTGCTATGCACCAAATTTTGATGCCTTTTAAATACCTTGATGCCTGTAGCACTAG
AAATGCTTTCCTATTTAAAATAAAAGTTAAATTTTAAAATAGAGCTTTGTATACTATGTA
AGCAGTTTTGTATCAGCTTTAAAAAAGCTTTGGTGTAAGAGTCAGTATTTTTTGGCTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTAAGATAACTAACTATGCGTAAGGCAACTTGGAAAGGTGGGTTTTTTTTTTAGCTTGG
TAGCTTTAATTTCCTGCCATCCTACAAACAGGTAGGCTGTGGAGTACTGTTCCATTTTGT
GTCCTTTGCTCCCAGACCTTTCCCAAGTGGGAGCATCAGCATTTGGCTGCCACAATCTTA
TGATGGTTTAGGCAGTTTTGCTGGTTCTAGCTTATCTCTAGAGGCCAGGCTGTGTCAGAA
GCTAAGCACAAATGAGCTATGCTTCAATACAGGAGCAGAGAATATGCAGGACTCCAGATA
GGAAGCTTTTAAGATTCACACCGGCATAGAAGACTTTTCCTTCCGTTTACAGCCTAAAAT
GGTTCTGGCCTACCCTGTCCCATCTGCATGGCCTAAAAAACAGCCTTTTTCCAAAAGGCC
TTGAGGCAGATTTAGAAATTATATAGCATCATAAACCTGACCCTCCATACCAAAGATGCC
CTGGTGCTGCTGCTGGTGAGACTGGTGCCCAAGGAGGGGCCAGCAAGAATCTCCAGCCTG
CTGTCTACCAAAGGAGCTGCCCGATTTGGGTGCTCTTTTCAAACCCTGCCCTCAGACCTC
CCCTTAATAGAATTAGCTTCTCGTTCCAAGGCTTTGGGCCTGTTTCAGAGCCCCTGAAGT
TTGCAGTATGTTTTCACATAAAATGTTCTACTTTTATTCAGGAAGCAAATTTTTTGAGTG
CCTATATGAGACAGTGTGCTGAGCTGGTCAAAGTCTTGATGCTCTTATTGCAGGGGATTG
TGGGTCCTAGATGCCAGTACTCTGCTGAGGCCAGTGGAGGGCGTCAGCTCATTGCCCACC
ACCTCTGATTAGCCAGTTAGCAGCTGTTGACCCAGGAAGAGGAAGTATGGTCTTTAAAAA
AATATAAACAGGATGTTTTAGATTCTCCCCTAAAACTAGTTAGGAAAAATTGCCTATCCA
GATCACTCTAGTCCCTCTTGGAGCCTGGTGTTTTCATATTTTCTTTGGAAGTGAGTTTTG
TGTCATGGAGTGTGAATAGTGAGATTTGCTTTGGGGCCTGTGGTTGGGAGCCCAGAGCTT
CCTTTGGAGGGGTTGTGGGGGACTAGCCCCTGAGATGAAGTTCCAGAGAGTTGGCCAGAC
TTCACCTCCACCCTCTTGCCCCTGGTGTAGCTGCCTCACATGGGGTTCTTGCAAGAGCTC
CCCTTGCAAGACCCTTTGGGGGTTGCTCTGCTGCCCTCAAGAATAAAAGCCTCTATGATC
CAGAGTTGCTATGCACCAAATTTTGATGCCTTTTAAATACCTTGATGCCTGTAGCACTAG
AAATGCTTTCCTATTTAAAATAAAAGTTAAATTTTAAAATAGAGCTTTGTATACTATGTA
AGCAGTTTTGTATCAGCTTTAAAAAAGCTTTGGTGTAAGAGTCAGTATTTTTTGGCTTTG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               574-723, - strand, RNAz p=0.996985
               

               
               1015-1331, - strand, RNAz p=0.997933

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               574-723, - strand, RNAz p=0.996985
               

               
               1015-1331, - strand, RNAz p=0.997933

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               1160-1225, + strand, RNAmicro p=0.9838

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               1160-1225, + strand, RNAmicro p=0.9838

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               9-1440, gnl|bosTau2|chr18 (14748317-14746882)
               

               
               9-1440, gnl|Hg17|chr16 (66818636-66820070)
               

               
               9-1440, gnl|Mm7|chr8 (104727600-104728864)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-1440, gnl|bosTau2|chr18 (14748317-14746882)
               

               
               9-1440, gnl|Hg17|chr16 (66818636-66820070)
               

               
               9-1440, gnl|Mm7|chr8 (104727600-104728864)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               pla (0.267344)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               cty (0.10408)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               cty (0.10408)

	574-723, - strand, RNAz p=0.996985
	1015-1331, - strand, RNAz p=0.997933

	9-1440, gnl\|bosTau2\|chr18 (14748317-14746882)
	9-1440, gnl\|Hg17\|chr16 (66818636-66820070)
	9-1440, gnl\|Mm7\|chr8 (104727600-104728864)

	pla (0.267344)
	eli (0.151814)
	cag (0.151194)
	lnt (0.142308)
	cty (0.10408)