Ss1.1-Pig4-TMW8063K21.3
|
GTAAGGCAGAATACCTTGATGCCTTGTCTCAGAGATAATGCTGGTGGTGCTCCGGACCGA
TTAACACAAGAGGGGGCAGACAACTCAGCGGAAAAGCTTTCCATCCTTCGGCTCCGGACC
GAAGAAAAGATGTGGAGTGGGCTGCTCCCTCCCGGCCTAAATGAAAGTGATGTTGAGTTG
GATTCTGACGATGATGAAGCCACATTAGAGAGCTCTGGACTTAACTTACAGGAAGGGAAA
GAAGATGGGACCATTACAGAAACAGAGATCTCAGATATCCCTACAAATGGACCAAAAACT
GAAGCAGAGGCAAATGTAAATGCGTACGAAGAGTGTCCTTCTGGAATTCCCTTAAATATG
TGGAATAAATTTCAAGAACTGCATAAAAAACATTCTGAACAGAAAACCTCAAATTCAACA
ATCAGAAGGAAAAAAAGAAAACGCTCCAGAAAAGATAAATTGAAGAATGAAGAAGACTCT
CATAATGAACAGTCCAAAAGTGAAACCCAGTGGAAGGAACTCACCCAGTATTTTGGAGTC
AATGATAGGTTTGACCCCCCTGTTAAAAAGAAAAAAGTTGAAAAGTCGGGCCTTGAGAAG
AGCATAGACCAAGCCGTGGAAGAGTGGAACATTGAGAAGGCCGAGGAACTCAGCAACCAG
CTAGCGACTCGAGAGCTTGGTGTAAAAATTGCCAAAGCAATTGCCTGCCACAACTTTGTG
AAAGCCAAAAAAGATGCTGAAAATTCACAGGTTGCTCGAAAAAAGAAGAAACTTGCCTGG
GGGTTTGAAGCAAAGAAGAGGTGGGAAACCAAAAGTAACATGGGGTATATGTGACTTGTC
AGAATTCCTCAAGACCTTCAAGACTTCTCCCTTGAATCTTCAGTTGCTCAATTGACTGAA
AAAAATTTTCCTGCTTCTGTTAACTATATCAGGAAATTGATGGAAGTAGAAAAAATAAGC
ATAACATTTGGGAGTTGATTATCAAATCTTTTTCAGTCTTTTTCTAAAGAGTTCATCCTA
TTGAAGTAAATGACATGGAGAATTCTGTTATTTGTACAGGAAATTTAAGCATACATATGG
AGGGAAAAGATAGGATTTTATTTCTTTGTTTATCTGGACCTCCAGGATAAAATCAATTTT
ACTTTTCATCCATTTGGTGTAGCATAGCCAAAGAGCTCCTCGTGCTTTCTTATCTGTACT
CAGTGTAACTACACTCATTCTGGAGTTATTCTGGAGTTTTTAAGATTGTCATTTGTTTGT
AATGGATTAGTCATAAGTGCAAGAAAGTCTCAATTGATAATGAGACTTTTCCAATTTGTA
AGTCACTTTACAAACAACTTTAATTATCTTAATGTTATCAAAGTAATTATTGATTCTTTA
TTAGAGGCAGTAGCATTGATATTTCACAGTCACATAATAAAAGCAATTGATTAAAAAAAA
TGTACTTTCAGATTAAGTATCACAGTTTTAAGAAATGACAGAATGTAGTGTTTGAAGGAT
GATTTAAATTCCAGTTCTCTGCCTGGAAATGTCTTCTTAAATCTCTCTCTCGCCTCTGTC
ATTTAAATTATGAGATGGTTCTTAGAGGAGAAATTGGTGTGATATTCTTAGTTATAACTC
AAGACAGTGTAACTTTGAACTGCT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GTAAGGCAGAATACCTTGATGCCTTGTCTCAGAGATAATGCTGGTGGTGCTCCGGACCGA
TTAACACAAGAGGGGGCAGACAACTCAGCGGAAAAGCTTTCCATCCTTCGGCTCCGGACC
GAAGAAAAGATGTGGAGTGGGCTGCTCCCTCCCGGCCTAAATGAAAGTGATGTTGAGTTG
GATTCTGACGATGATGAAGCCACATTAGAGAGCTCTGGACTTAACTTACAGGAAGGGAAA
GAAGATGGGACCATTACAGAAACAGAGATCTCAGATATCCCTACAAATGGACCAAAAACT
GAAGCAGAGGCAAATGTAAATGCGTACGAAGAGTGTCCTTCTGGAATTCCCTTAAATATG
TGGAATAAATTTCAAGAACTGCATAAAAAACATTCTGAACAGAAAACCTCAAATTCAACA
ATCAGAAGGAAAAAAAGAAAACGCTCCAGAAAAGATAAATTGAAGAATGAAGAAGACTCT
CATAATGAACAGTCCAAAAGTGAAACCCAGTGGAAGGAACTCACCCAGTATTTTGGAGTC
AATGATAGGTTTGACCCCCCTGTTAAAAAGAAAAAAGTTGAAAAGTCGGGCCTTGAGAAG
AGCATAGACCAAGCCGTGGAAGAGTGGAACATTGAGAAGGCCGAGGAACTCAGCAACCAG
CTAGCGACTCGAGAGCTTGGTGTAAAAATTGCCAAAGCAATTGCCTGCCACAACTTTGTG
AAAGCCAAAAAAGATGCTGAAAATTCACAGGTTGCTCGAAAAAAGAAGAAACTTGCCTGG
GGGTTTGAAGCAAAGAAGAGGTGGGAAACCAAAAGTAACATGGGGTATATGTGACTTGTC
AGAATTCCTCAAGACCTTCAAGACTTCTCCCTTGAATCTTCAGTTGCTCAATTGACTGAA
AAAAATTTTCCTGCTTCTGTTAACTATATCAGGAAATTGATGGAAGTAGAAAAAATAAGC
ATAACATTTGGGAGTTGATTATCAAATCTTTTTCAGTCTTTTTCTAAAGAGTTCATCCTA
TTGAAGTAAATGACATGGAGAATTCTGTTATTTGTACAGGAAATTTAAGCATACATATGG
AGGGAAAAGATAGGATTTTATTTCTTTGTTTATCTGGACCTCCAGGATAAAATCAATTTT
ACTTTTCATCCATTTGGTGTAGCATAGCCAAAGAGCTCCTCGTGCTTTCTTATCTGTACT
CAGTGTAACTACACTCATTCTGGAGTTATTCTGGAGTTTTTAAGATTGTCATTTGTTTGT
AATGGATTAGTCATAAGTGCAAGAAAGTCTCAATTGATAATGAGACTTTTCCAATTTGTA
AGTCACTTTACAAACAACTTTAATTATCTTAATGTTATCAAAGTAATTATTGATTCTTTA
TTAGAGGCAGTAGCATTGATATTTCACAGTCACATAATAAAAGCAATTGATTAAAAAAAA
TGTACTTTCAGATTAAGTATCACAGTTTTAAGAAATGACAGAATGTAGTGTTTGAAGGAT
GATTTAAATTCCAGTTCTCTGCCTGGAAATGTCTTCTTAAATCTCTCTCTCGCCTCTGTC
ATTTAAATTATGAGATGGTTCTTAGAGGAGAAATTGGTGTGATATTCTTAGTTATAACTC
AAGACAGTGTAACTTTGAACTGCT
|
|
gi|57107325|ref|XP_535027.1| |
Protein identifier
|
gi|57107325|ref|XP_535027.1| |
|
220-773, gnl|bosTau2|chr12 (26763137-26763682) |
|
220-773, gnl|Hg17|chr13 (75161270-75160749) |
| |
|
950-1302, gnl|bosTau2|chr12 (26764453-26764765) |
|
950-1302, gnl|Hg17|chr13 (75160575-75159890) |
|
950-1302, gnl|Mm7|chr19 (60124417-60124092) |
| |
|
1344-1640, gnl|bosTau2|chr26 (25119146-25118843) |
|
1344-1640, gnl|canFam2|chr28 (31697451-31697734) |
|
1344-1640, gnl|dasNov1|scaffold_3529 (69833-69597) |
|
1344-1640, gnl|echTel1|scaffold_322030 (3135-2852) |
|
1344-1640, gnl|hg17|chr10 (120059216-120059506) |
|
1344-1640, gnl|Hg17|chr10 (120059562-120059259) |
|
1344-1640, gnl|loxAfr1|scaffold_39349 (13323-13032) |
|
1344-1640, gnl|mm7|chr19 (60123720-60124019) |
|
1344-1640, gnl|Mm7|chr19 (60124076-60123779) |
|
1344-1640, gnl|oryCun1|scaffold_206790 (228091-227806) |
|
1344-1640, gnl|panTro1|chr8 (122317387-122317677) |
|
1344-1640, gnl|rheMac2|chr9 (117927264-117927555) |
|
1344-1640, gnl|rn3|chr1 (266961024-266961308) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
220-773, gnl|bosTau2|chr12 (26763137-26763682) |
|
220-773, gnl|Hg17|chr13 (75161270-75160749) |
| |
|
950-1302, gnl|bosTau2|chr12 (26764453-26764765) |
|
950-1302, gnl|Hg17|chr13 (75160575-75159890) |
|
950-1302, gnl|Mm7|chr19 (60124417-60124092) |
| |
|
1344-1640, gnl|bosTau2|chr26 (25119146-25118843) |
|
1344-1640, gnl|canFam2|chr28 (31697451-31697734) |
|
1344-1640, gnl|dasNov1|scaffold_3529 (69833-69597) |
|
1344-1640, gnl|echTel1|scaffold_322030 (3135-2852) |
|
1344-1640, gnl|hg17|chr10 (120059216-120059506) |
|
1344-1640, gnl|Hg17|chr10 (120059562-120059259) |
|
1344-1640, gnl|loxAfr1|scaffold_39349 (13323-13032) |
|
1344-1640, gnl|mm7|chr19 (60123720-60124019) |
|
1344-1640, gnl|Mm7|chr19 (60124076-60123779) |
|
1344-1640, gnl|oryCun1|scaffold_206790 (228091-227806) |
|
1344-1640, gnl|panTro1|chr8 (122317387-122317677) |
|
1344-1640, gnl|rheMac2|chr9 (117927264-117927555) |
|
1344-1640, gnl|rn3|chr1 (266961024-266961308) |
|
pro (0.512033) |
|
sug (0.509165) |
|
ret (0.3862) |
|
ebs (0.354904) |
|
sme (0.305437) |
|
liv (0.292569) |
|
lin (0.291206) |
|
spl (0.286369) |
|
nmm (0.265604) |
|
tra (0.246184) |
|
eep (0.245128) |
|
pgl (0.236967) |
|
pan (0.23596) |
|
tes (0.207814) |
|
col (0.195008) |
|
nep (0.183925) |
|
mgm (0.180343) |
|
gul (0.177588) |
|
fty (0.17584) |
|
eye (0.170503) |
|
cki (0.165235) |
|
tbr (0.154178) |
|
bfe (0.149858) |
|
fat (0.147427) |
|
ski (0.146735) |
|
hyp (0.142837) |
|
lnt (0.142308) |
|
lyg (0.133103) |
|
kid (0.129735) |
|
ova (0.129132) |
|
thg (0.126791) |
|
eru (0.120048) |
|
clu (0.119646) |
|
med (0.116252) |
|
ecc (0.115035) |
|
nbm (0.0993246) |
|
eje (0.0988338) |
|
ldo (0.0970026) |
|
pro (0.512033) |
|
sug (0.509165) |
|
ret (0.3862) |
|
ebs (0.354904) |
|
sme (0.305437) |
|
liv (0.292569) |
|
lin (0.291206) |
|
spl (0.286369) |
|
nmm (0.265604) |
|
tra (0.246184) |
|
eep (0.245128) |
|
pgl (0.236967) |
|
pan (0.23596) |
|
tes (0.207814) |
|
col (0.195008) |
|
nep (0.183925) |
|
mgm (0.180343) |
|
gul (0.177588) |
|
fty (0.17584) |
|
eye (0.170503) |
|
cki (0.165235) |
|
tbr (0.154178) |
|
bfe (0.149858) |
|
fat (0.147427) |
|
ski (0.146735) |
|
hyp (0.142837) |
|
lnt (0.142308) |
|
lyg (0.133103) |
|
kid (0.129735) |
|
ova (0.129132) |
|
thg (0.126791) |
|
eru (0.120048) |
|
clu (0.119646) |
|
med (0.116252) |
|
ecc (0.115035) |
|
nbm (0.0993246) |
|
eje (0.0988338) |
|
ldo (0.0970026) |
