Ss1.1-Pig4-TMW8063L02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTCCTCTTTCTCAGGGGACTTGGGGGTCTCAGCATTTCTGTGTTTCTGCACAGGCAGCTT CTCGCTGTCAGCTAGGGGCTTGTCCAAGTCGATGTCTAGGGCCCTGTAGGGGTCGTTTGG GTCTTTGTCATCCTCGTCGCTGGGCAGGGCGTTCTCAGGCATCTCCTCAGTGACGATGTC CACGCGCTGGGCAGGTGCGATGTCCTCATCGCTCTCTGTGTGCAATGAGCTATGGCGCCG TGTGCCCCGCCTCTCCCGCTCCCTCCTCTTCTTCTTCCTCTTGTCCTTCTCCAGCCGCTG CTGATGGCGCCGCTCCTCCTCCAGCTTCACGTACTGGTCCGACATGGGCATCCCTGGCAC TTTCAAGGGCACTGAGAGGTCAATTTGCACCACAGGAATGTGGTCCACACCCGGTGCATC CTGGTATCGCTTTTGGGGGGACGGGGAGCTCTTGATGTAAAAGGGGTTGTTGGCCTGCTC CTGCTTCCGGGCCTCCCGGCGCCGGGCCAGTTCCTGCTCATCTGCCTCAGGCGGCCGCTG CTTCGCATGCCGCTGCTCCTCGTCCTGAAAGATGGCCTTGGGCTTCTCATCCTCAGACTC ACTGTCCGAGAGTGGCTCGTTGATCCAGGCATCCAGGTCCAGGCCTTCGGGGACCGGGAC CTTCTTCTGTGCCTTCGGAGCCACTGGGTTCAGCTCCCCAGCAAAGAGAGCACTCACTTC TTCTGCCACCGGCATGTCCTTGGCCTGAAGCTTCTGCACGTGCTTGACCAGCTGCAAGAT GCAGGATGCCCGCTCCTGGACCTCCAGGTCTGCGCTCTGCACAAACTGGGGCAGCCGTTC CACCAGGAGCTGGGTGACCTCCTGGGCTGCCTGCGCGTCCGCAGCCTGCTCCTTCTGCTG CAGGATGGCCGCATACAACTTGACCACATTCTGCACATACACTGCCTGGATGTGGCCCGG CAGGGTGGTGACTTTGGGCCGCAGCATGGCCTCCAGGGTCTGCTGGGGATCCTGCAGGTG CTCAGAAAACTCTCCGCAAATCCAGGCAGCCGCGTAGAGCACCTCGCAGATGCCGTTGCG CTGGGTGCTACTGGCCACTAGGTGGGCACTGTCAAGCAGCGCAGACATCTGTGACACGGC AAACCTGCGGATGGCCTTCACGCGGATGGCCACATCTAGCATCTGTGCGGCCGCTCCCAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTCCTCTTTCTCAGGGGACTTGGGGGTCTCAGCATTTCTGTGTTTCTGCACAGGCAGCTT CTCGCTGTCAGCTAGGGGCTTGTCCAAGTCGATGTCTAGGGCCCTGTAGGGGTCGTTTGG GTCTTTGTCATCCTCGTCGCTGGGCAGGGCGTTCTCAGGCATCTCCTCAGTGACGATGTC CACGCGCTGGGCAGGTGCGATGTCCTCATCGCTCTCTGTGTGCAATGAGCTATGGCGCCG TGTGCCCCGCCTCTCCCGCTCCCTCCTCTTCTTCTTCCTCTTGTCCTTCTCCAGCCGCTG CTGATGGCGCCGCTCCTCCTCCAGCTTCACGTACTGGTCCGACATGGGCATCCCTGGCAC TTTCAAGGGCACTGAGAGGTCAATTTGCACCACAGGAATGTGGTCCACACCCGGTGCATC CTGGTATCGCTTTTGGGGGGACGGGGAGCTCTTGATGTAAAAGGGGTTGTTGGCCTGCTC CTGCTTCCGGGCCTCCCGGCGCCGGGCCAGTTCCTGCTCATCTGCCTCAGGCGGCCGCTG CTTCGCATGCCGCTGCTCCTCGTCCTGAAAGATGGCCTTGGGCTTCTCATCCTCAGACTC ACTGTCCGAGAGTGGCTCGTTGATCCAGGCATCCAGGTCCAGGCCTTCGGGGACCGGGAC CTTCTTCTGTGCCTTCGGAGCCACTGGGTTCAGCTCCCCAGCAAAGAGAGCACTCACTTC TTCTGCCACCGGCATGTCCTTGGCCTGAAGCTTCTGCACGTGCTTGACCAGCTGCAAGAT GCAGGATGCCCGCTCCTGGACCTCCAGGTCTGCGCTCTGCACAAACTGGGGCAGCCGTTC CACCAGGAGCTGGGTGACCTCCTGGGCTGCCTGCGCGTCCGCAGCCTGCTCCTTCTGCTG CAGGATGGCCGCATACAACTTGACCACATTCTGCACATACACTGCCTGGATGTGGCCCGG CAGGGTGGTGACTTTGGGCCGCAGCATGGCCTCCAGGGTCTGCTGGGGATCCTGCAGGTG CTCAGAAAACTCTCCGCAAATCCAGGCAGCCGCGTAGAGCACCTCGCAGATGCCGTTGCG CTGGGTGCTACTGGCCACTAGGTGGGCACTGTCAAGCAGCGCAGACATCTGTGACACGGC AAACCTGCGGATGGCCTTCACGCGGATGGCCACATCTAGCATCTGTGCGGCCGCTCCCAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 502-620, - strand, RNAz p=0.634928 | |
| 929-1020, - strand, RNAz p=0.815066 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 502-620, - strand, RNAz p=0.634928 | |
| 929-1020, - strand, RNAz p=0.815066 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 154-356, gnl|bosTau2|chr7 (18216843-18216641) | |
| 154-356, gnl|Hg17|chr19 (2066218-2066420) | |
| 154-356, gnl|Mm7|chr10 (80503593-80503783) | |
| 502-658, gnl|bosTau2|chr7 (18215201-18215045) | |
| 502-658, gnl|canFam2|chr20 (60061945-60061780) | |
| 502-658, gnl|danRer3|chr22 (18552638-18552475) | |
| 502-658, gnl|echTel1|scaffold_268702 (3273-3106) | |
| 502-658, gnl|fr1|chrUn (161771372-161771524) | |
| 502-658, gnl|galGal2|chr28 (1125240-1125089) | |
| 502-658, gnl|hg17|chr19 (2067598-2067764) | |
| 502-658, gnl|Hg17|chr19 (2067604-2067762) | |
| 502-658, gnl|loxAfr1|scaffold_225991 (241-407) | |
| 502-658, gnl|mm7|chr10 (80505485-80505651) | |
| 502-658, gnl|Mm7|chr10 (80505491-80505648) | |
| 502-658, gnl|monDom2|scaffold_237 (210289-210118) | |
| 502-658, gnl|panTro1|chr20 (2178411-2178577) | |
| 502-658, gnl|rheMac2|chr19 (1906345-1906511) | |
| 502-658, gnl|rn3|chr7 (10506349-10506182) | |
| 502-658, gnl|tetNig1|chr1 (10553568-10553715) | |
| 502-658, gnl|xenTro1|scaffold_296 (534258-534105) | |
| 789-1020, gnl|bosTau2|chr7 (18213745-18213514) | |
| 789-1020, gnl|canFam2|chr20 (60060388-60060137) | |
| 789-1020, gnl|danRer3|chr22 (18547880-18547602) | |
| 789-1020, gnl|fr1|chrUn (161771834-161772092) | |
| 789-1020, gnl|galGal2|chr28 (1124643-1124384) | |
| 789-1020, gnl|hg17|chr19 (2069587-2069852) | |
| 789-1020, gnl|Hg17|chr19 (2069599-2069830) | |
| 789-1020, gnl|mm7|chr10 (80507294-80507563) | |
| 789-1020, gnl|Mm7|chr10 (80507318-80507549) | |
| 789-1020, gnl|monDom2|scaffold_75 (3875727-3875966) | |
| 789-1020, gnl|panTro1|chr20 (2180399-2180664) | |
| 789-1020, gnl|rheMac2|chr19 (1908295-1908558) | |
| 789-1020, gnl|rn3|chr7 (10504540-10504263) | |
| 789-1020, gnl|tetNig1|chr1 (10554036-10554293) | |
| 789-1020, gnl|xenTro1|scaffold_296 (530833-530575) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 154-356, gnl|bosTau2|chr7 (18216843-18216641) | |
| 154-356, gnl|Hg17|chr19 (2066218-2066420) | |
| 154-356, gnl|Mm7|chr10 (80503593-80503783) | |
| 502-658, gnl|bosTau2|chr7 (18215201-18215045) | |
| 502-658, gnl|canFam2|chr20 (60061945-60061780) | |
| 502-658, gnl|danRer3|chr22 (18552638-18552475) | |
| 502-658, gnl|echTel1|scaffold_268702 (3273-3106) | |
| 502-658, gnl|fr1|chrUn (161771372-161771524) | |
| 502-658, gnl|galGal2|chr28 (1125240-1125089) | |
| 502-658, gnl|hg17|chr19 (2067598-2067764) | |
| 502-658, gnl|Hg17|chr19 (2067604-2067762) | |
| 502-658, gnl|loxAfr1|scaffold_225991 (241-407) | |
| 502-658, gnl|mm7|chr10 (80505485-80505651) | |
| 502-658, gnl|Mm7|chr10 (80505491-80505648) | |
| 502-658, gnl|monDom2|scaffold_237 (210289-210118) | |
| 502-658, gnl|panTro1|chr20 (2178411-2178577) | |
| 502-658, gnl|rheMac2|chr19 (1906345-1906511) | |
| 502-658, gnl|rn3|chr7 (10506349-10506182) | |
| 502-658, gnl|tetNig1|chr1 (10553568-10553715) | |
| 502-658, gnl|xenTro1|scaffold_296 (534258-534105) | |
| 789-1020, gnl|bosTau2|chr7 (18213745-18213514) | |
| 789-1020, gnl|canFam2|chr20 (60060388-60060137) | |
| 789-1020, gnl|danRer3|chr22 (18547880-18547602) | |
| 789-1020, gnl|fr1|chrUn (161771834-161772092) | |
| 789-1020, gnl|galGal2|chr28 (1124643-1124384) | |
| 789-1020, gnl|hg17|chr19 (2069587-2069852) | |
| 789-1020, gnl|Hg17|chr19 (2069599-2069830) | |
| 789-1020, gnl|mm7|chr10 (80507294-80507563) | |
| 789-1020, gnl|Mm7|chr10 (80507318-80507549) | |
| 789-1020, gnl|monDom2|scaffold_75 (3875727-3875966) | |
| 789-1020, gnl|panTro1|chr20 (2180399-2180664) | |
| 789-1020, gnl|rheMac2|chr19 (1908295-1908558) | |
| 789-1020, gnl|rn3|chr7 (10504540-10504263) | |
| 789-1020, gnl|tetNig1|chr1 (10554036-10554293) | |
| 789-1020, gnl|xenTro1|scaffold_296 (530833-530575) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.267344) | |
| col (0.195008) |