Non-Coding RNA Search

Ss1.1-Pig4-TMW8063M24.3.5

Sequence:


               
               TCAATAGTTCCATCGGCTCAGATGGGTACATGCTGTCCTCCCTGACCTGTGGAATGGCTC
CAGTAACTTCCATCACTGAAGGGCTCCAGCAGGTGGTCACCATGGGCCTTTTCCGCACTA
TCGCTTTGTTTTACCTGGGAAGTTTCGACAGCATAGTTCGTCGCTGCATGATGCAGAGAG
CTAGATCGGAAATTGCAGACAAAACTGCCTAATTCTTACCCCTTGGAAAAAGACTTCCGA
AGTCACTTGACCAGCTTGCTGCTAAAGGGGGTGCAGTTTTTGCCTTGCAGACCCATGTCT
TGCTTTTGAATCTGCAGGATTGGACCAATGCTCTTCAGAAACTTGGCTGCAAGCAAGGGG
ATAGACGTTCAACTCCAGACAATATTCTTAATACTATGCAAATACGGAGCAGGAGACAGC
TTGATTCTTGGAGGTGGAGAGGTGATGGCAAGGGAACTAATAGCGTGTGAGCAGGGCAAA
GAACAGGATTCAGGAGTGATCGTGAAAATTTTTTCTATTTATTCTATTTTTCCCAGAAGA
GATCGAGTCCAGAAATGTCCTTTCTGAGGACTTTTTGACCCTGCCGTGAAAGACAGTTTA
GGGATTTCTGGGGCCATTTTTTTTCTCTTTTCCTTTTTTAACTCCATGTATTTTATTCCA
GATGCGATTCACACATTGCCACTGTGTCTGAGTGCATGATAACGTCCCTAACTCACTCTG
TTGCTGGTGGATCCTCGTGGCTTCTCTCTCTTTGATCCCATAAAACTACAAGGGGGATGG
GAGAGGGCAGTGCAGTGGAGCAAGGGAGATAAATATTTTCCAGTAGGAAAACATAATGCT
TTCTTGTCTTTTTTAGACTCAAATGCTTAGGGCACTTTTCATTTTTCATTAACGAAGAAA
GGCAGCCTCCTAAAATGTTTTCTGAAGAGAAATAAAATTCTTAGAAGCTTAAGGATTACA
GTTCCTTCAGCAGCCATGATGACCTGATGCTAGCCATTCCATTGTAGTGTCTTACTCTTC
CCGAGTCTTCCTTTCCAATTTTGCTTATACTGCTATAATATTTTTGTAAAAAAACAAAAA
AAAGTAAAGAGAAGACCATTTTTTTGACTTGACTTTGTAAATTAATTAATGAATTTATTA
AAGCAAACGAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAATAGTTCCATCGGCTCAGATGGGTACATGCTGTCCTCCCTGACCTGTGGAATGGCTC
CAGTAACTTCCATCACTGAAGGGCTCCAGCAGGTGGTCACCATGGGCCTTTTCCGCACTA
TCGCTTTGTTTTACCTGGGAAGTTTCGACAGCATAGTTCGTCGCTGCATGATGCAGAGAG
CTAGATCGGAAATTGCAGACAAAACTGCCTAATTCTTACCCCTTGGAAAAAGACTTCCGA
AGTCACTTGACCAGCTTGCTGCTAAAGGGGGTGCAGTTTTTGCCTTGCAGACCCATGTCT
TGCTTTTGAATCTGCAGGATTGGACCAATGCTCTTCAGAAACTTGGCTGCAAGCAAGGGG
ATAGACGTTCAACTCCAGACAATATTCTTAATACTATGCAAATACGGAGCAGGAGACAGC
TTGATTCTTGGAGGTGGAGAGGTGATGGCAAGGGAACTAATAGCGTGTGAGCAGGGCAAA
GAACAGGATTCAGGAGTGATCGTGAAAATTTTTTCTATTTATTCTATTTTTCCCAGAAGA
GATCGAGTCCAGAAATGTCCTTTCTGAGGACTTTTTGACCCTGCCGTGAAAGACAGTTTA
GGGATTTCTGGGGCCATTTTTTTTCTCTTTTCCTTTTTTAACTCCATGTATTTTATTCCA
GATGCGATTCACACATTGCCACTGTGTCTGAGTGCATGATAACGTCCCTAACTCACTCTG
TTGCTGGTGGATCCTCGTGGCTTCTCTCTCTTTGATCCCATAAAACTACAAGGGGGATGG
GAGAGGGCAGTGCAGTGGAGCAAGGGAGATAAATATTTTCCAGTAGGAAAACATAATGCT
TTCTTGTCTTTTTTAGACTCAAATGCTTAGGGCACTTTTCATTTTTCATTAACGAAGAAA
GGCAGCCTCCTAAAATGTTTTCTGAAGAGAAATAAAATTCTTAGAAGCTTAAGGATTACA
GTTCCTTCAGCAGCCATGATGACCTGATGCTAGCCATTCCATTGTAGTGTCTTACTCTTC
CCGAGTCTTCCTTTCCAATTTTGCTTATACTGCTATAATATTTTTGTAAAAAAACAAAAA
AAAGTAAAGAGAAGACCATTTTTTTGACTTGACTTTGTAAATTAATTAATGAATTTATTA
AAGCAAACGAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61845878|ref|XP_581861.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61845878|ref|XP_581861.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               733-890, + strand, RNAz p=0.911629

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               733-890, + strand, RNAz p=0.911629

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK025120, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK025120, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               89-576, gnl|bosTau2|chr24 (44836731-44836266)
               

               
               89-576, gnl|Hg17|chr18 (59150118-59149554)
               

               
               89-576, gnl|Mm7|chr1 (106624881-106624291)
               


               
               606-1154, gnl|bosTau2|chr24 (44836279-44835742)
               

               
               606-1154, gnl|Hg17|chr18 (59149567-59148947)
               

               
               606-1154, gnl|Mm7|chr1 (106624305-106623767)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               89-576, gnl|bosTau2|chr24 (44836731-44836266)
               

               
               89-576, gnl|Hg17|chr18 (59150118-59149554)
               

               
               89-576, gnl|Mm7|chr1 (106624881-106624291)
               


               
               606-1154, gnl|bosTau2|chr24 (44836279-44835742)
               

               
               606-1154, gnl|Hg17|chr18 (59149567-59148947)
               

               
               606-1154, gnl|Mm7|chr1 (106624305-106623767)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               thg (0.507164)
               

               
               mgp (0.230681)
               

               
               nco (0.161734)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               jej (0.0989218)

Expressed library(ies): 10 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.507164)
               

               
               mgp (0.230681)
               

               
               nco (0.161734)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               jej (0.0989218)

	89-576, gnl\|bosTau2\|chr24 (44836731-44836266)
	89-576, gnl\|Hg17\|chr18 (59150118-59149554)
	89-576, gnl\|Mm7\|chr1 (106624881-106624291)

	606-1154, gnl\|bosTau2\|chr24 (44836279-44835742)
	606-1154, gnl\|Hg17\|chr18 (59149567-59148947)
	606-1154, gnl\|Mm7\|chr1 (106624305-106623767)

	thg (0.507164)
	mgp (0.230681)
	nco (0.161734)
	lun (0.150489)
	isp (0.150376)
	pla (0.133672)
	kid (0.129735)
	tra (0.123092)
	med (0.116252)
	jej (0.0989218)