Ss1.1-Pig4-TMW8063N17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCATTATTTTGGAAGAAGGTAGCCTTCTTTTTTCAGAGAGAGGTCCTTTGGACCCTCAGA ACCAGTCATCTGAAGACTCAGAGACAGAGCTTTTATCAAACCTCGGAGAATCAGCTGATA TCCTAGATGACCAGGCCATTGAAGAAGACTGCTGGTTAGACCATCCTTACTTCCAGTCTC TGAACCAACAGCCCCGTGAGATAACAAACCAGGTTGTTCCCCAGGAGCGGCAGCCTGAAG CAGAACTGGGCCCACTGTTGTATCAGCATGAACCCCCAGGGTCCACTTTCCTAAGACCAG CTTTTCCAAGACCAGAAACCCAGCAGGATGGGATTCCAGGCCCTTCTTCTCCTCAGCCTG CACATCCTCTGGGAGAGCTTGAAGACCAGCAGTTAGCAATAGACGATGAAGAGCCAGGTC CAGCCTTTCCACTGCAAGGAACTCAGGAGCCCAACTTGGAAAACCTTTGGGGGCAAGAAG CTCCTGATGTAGATCAAGAACTCGTTGCACTATTAGTGAAAGAAACAGAAGTAAGATTTC CAGATGTAGCAAATGGGTATGTGGAGGAAATAATTCGTTTGAAGAATTACTATGATTTGA ATGTACTTTGTAATTTTCTTCTGGAAAATCCAGATTATCCAAAGAGAGAAGATAGAATCA TTATCAACCCCAATAGCAGCCTGCTTGCCAGCCATGATGAGACAAAGTTGCCTAAGATAG ACTTTTTTGACTACTCTAAATTGGCTCCTCTTGACCAGCGCTGCTTCATCCAAGCTGCTG ACCTCCTGATGGCCGACTTCAAAATGCTGAGCAGTCAGGACATCAAGTGGGCCCTGCATG AGCTCAAAGGACACTATGCAATCACCCGAAAGGCCTTTTCTGATGCCATTAAAAAATGGC AGGAACTATCGCCAGAAACCAGTGGAAAAAGAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCATTATTTTGGAAGAAGGTAGCCTTCTTTTTTCAGAGAGAGGTCCTTTGGACCCTCAGA ACCAGTCATCTGAAGACTCAGAGACAGAGCTTTTATCAAACCTCGGAGAATCAGCTGATA TCCTAGATGACCAGGCCATTGAAGAAGACTGCTGGTTAGACCATCCTTACTTCCAGTCTC TGAACCAACAGCCCCGTGAGATAACAAACCAGGTTGTTCCCCAGGAGCGGCAGCCTGAAG CAGAACTGGGCCCACTGTTGTATCAGCATGAACCCCCAGGGTCCACTTTCCTAAGACCAG CTTTTCCAAGACCAGAAACCCAGCAGGATGGGATTCCAGGCCCTTCTTCTCCTCAGCCTG CACATCCTCTGGGAGAGCTTGAAGACCAGCAGTTAGCAATAGACGATGAAGAGCCAGGTC CAGCCTTTCCACTGCAAGGAACTCAGGAGCCCAACTTGGAAAACCTTTGGGGGCAAGAAG CTCCTGATGTAGATCAAGAACTCGTTGCACTATTAGTGAAAGAAACAGAAGTAAGATTTC CAGATGTAGCAAATGGGTATGTGGAGGAAATAATTCGTTTGAAGAATTACTATGATTTGA ATGTACTTTGTAATTTTCTTCTGGAAAATCCAGATTATCCAAAGAGAGAAGATAGAATCA TTATCAACCCCAATAGCAGCCTGCTTGCCAGCCATGATGAGACAAAGTTGCCTAAGATAG ACTTTTTTGACTACTCTAAATTGGCTCCTCTTGACCAGCGCTGCTTCATCCAAGCTGCTG ACCTCCTGATGGCCGACTTCAAAATGCTGAGCAGTCAGGACATCAAGTGGGCCCTGCATG AGCTCAAAGGACACTATGCAATCACCCGAAAGGCCTTTTCTGATGCCATTAAAAAATGGC AGGAACTATCGCCAGAAACCAGTGGAAAAAGAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 111-206, + strand, RNAz p=0.585957 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 111-206, + strand, RNAz p=0.585957 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 1-548, gnl|bosTau2|chr25 (36897883-36898428) | |
| 1-548, gnl|canFam2|chr6 (15229934-15228966) | |
| 1-548, gnl|dasNov1|scaffold_12338 (33887-34854) | |
| 1-548, gnl|echTel1|scaffold_294580 (59327-60281) | |
| 1-548, gnl|galGal2|chr14 (6361302-6362269) | |
| 1-548, gnl|hg17|chr7 (5553829-5554782) | |
| 1-548, gnl|Hg17|chr7 (5554356-5553827) | |
| 1-548, gnl|loxAfr1|scaffold_26474 (25781-24846) | |
| 1-548, gnl|mm7|chr5 (142123039-142123954) | |
| 1-548, gnl|Mm7|chr5 (142123562-142123041) | |
| 1-548, gnl|monDom2|scaffold_17 (6131121-6132056) | |
| 1-548, gnl|oryCun1|scaffold_142778 (2653-3608) | |
| 1-548, gnl|panTro1|chr6 (6013413-6014366) | |
| 1-548, gnl|rheMac2|chr3 (43225694-43224749) | |
| 1-548, gnl|rn3|chr12 (11899356-11898440) | |
| 706-873, gnl|bosTau2|chr25 (36906660-36906827) | |
| 706-873, gnl|canFam2|chr6 (15240648-15240901) | |
| 706-873, gnl|danRer3|chr3 (37247420-37247619) | |
| 706-873, gnl|dasNov1|scaffold_12338 (31308-31094) | |
| 706-873, gnl|echTel1|scaffold_294580 (51977-51767) | |
| 706-873, gnl|galGal2|chr14 (6355478-6355261) | |
| 706-873, gnl|hg17|chr7 (4797753-4797968) | |
| 706-873, gnl|Hg17|chr7 (5542470-5542303) | |
| 706-873, gnl|loxAfr1|scaffold_30463 (37696-37516) | |
| 706-873, gnl|mm7|chr5 (142119001-142118787) | |
| 706-873, gnl|Mm7|chr5 (142118971-142118804) | |
| 706-873, gnl|oryCun1|scaffold_128910 (7645-7852) | |
| 706-873, gnl|panTro1|chr6 (5214431-5214646) | |
| 706-873, gnl|rheMac2|chr3 (42998023-42998237) | |
| 706-873, gnl|rn3|chr12 (11904849-11905062) | |
| 706-873, gnl|xenTro1|scaffold_48 (1802260-1802465) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-548, gnl|bosTau2|chr25 (36897883-36898428) | |
| 1-548, gnl|canFam2|chr6 (15229934-15228966) | |
| 1-548, gnl|dasNov1|scaffold_12338 (33887-34854) | |
| 1-548, gnl|echTel1|scaffold_294580 (59327-60281) | |
| 1-548, gnl|galGal2|chr14 (6361302-6362269) | |
| 1-548, gnl|hg17|chr7 (5553829-5554782) | |
| 1-548, gnl|Hg17|chr7 (5554356-5553827) | |
| 1-548, gnl|loxAfr1|scaffold_26474 (25781-24846) | |
| 1-548, gnl|mm7|chr5 (142123039-142123954) | |
| 1-548, gnl|Mm7|chr5 (142123562-142123041) | |
| 1-548, gnl|monDom2|scaffold_17 (6131121-6132056) | |
| 1-548, gnl|oryCun1|scaffold_142778 (2653-3608) | |
| 1-548, gnl|panTro1|chr6 (6013413-6014366) | |
| 1-548, gnl|rheMac2|chr3 (43225694-43224749) | |
| 1-548, gnl|rn3|chr12 (11899356-11898440) | |
| 706-873, gnl|bosTau2|chr25 (36906660-36906827) | |
| 706-873, gnl|canFam2|chr6 (15240648-15240901) | |
| 706-873, gnl|danRer3|chr3 (37247420-37247619) | |
| 706-873, gnl|dasNov1|scaffold_12338 (31308-31094) | |
| 706-873, gnl|echTel1|scaffold_294580 (51977-51767) | |
| 706-873, gnl|galGal2|chr14 (6355478-6355261) | |
| 706-873, gnl|hg17|chr7 (4797753-4797968) | |
| 706-873, gnl|Hg17|chr7 (5542470-5542303) | |
| 706-873, gnl|loxAfr1|scaffold_30463 (37696-37516) | |
| 706-873, gnl|mm7|chr5 (142119001-142118787) | |
| 706-873, gnl|Mm7|chr5 (142118971-142118804) | |
| 706-873, gnl|oryCun1|scaffold_128910 (7645-7852) | |
| 706-873, gnl|panTro1|chr6 (5214431-5214646) | |
| 706-873, gnl|rheMac2|chr3 (42998023-42998237) | |
| 706-873, gnl|rn3|chr12 (11904849-11905062) | |
| 706-873, gnl|xenTro1|scaffold_48 (1802260-1802465) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (0.165235) | |
| med (0.116252) |