Ss1.1-Pig4-TMW8063N22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGACGAAGATGCTACCGGGGAACCCAAGGCCAAGAGACCAAAACATGCCACAGATAACA AAGAGCCCAGCCCAGATGATGGGATTTATTGGCAGGCCAATCTTGACAGATTCCACCAGC ACTTCCGTGACCAAGCCATTGTCAGTGCAGTTGCCAACAGGATGGACCAGACCAGCAGCG AGATTGTGCGGACCATGCTCCGGATGAGTGAGATCACCACTTCCTCTAGTGCCCCCTTCA CTCAGCCGTTGTCTTCCAATGAGATCTTCAGATCCCTCCCTGTTGGCTATAACATCTCTA AGCAAGTTCTTGATCAGTATCTCACTCTGCTGGCAGATGATCCACTAGAGTTTGTTGGAA AGTCTGGCGACAGTGGTGGAGGAATGTATGTCATTAACCTACATAAGGCTTTAGGATCCC TGGCCACAGCCACTCTGGAGTCTGTCGTGCAGGAGAGATTTGGATCACGCTGTGCCAGAA TCTTCCGTCTAGTTTTGCAAAAGAAACACCTGGAGCAGAAGCAGGTAGAAGACTTTGCAA TGATTCCAGCAAAGGAGGCAAAGGATATGCTTTATAAGATGCTCTCAGAAAATTTCATGT CACTTCAGGAGATTCCCAAAACACCAGACCATGCCCCATCGAGGACCTTCTATTTATATA CTGTTAACATCCTGTCAGCTGCCCGAATGTTGCTGCACAAGTGCTATAAGAGTGTAGCCA ACTTAATAGAAAGGAGGCAGTTTGAAACCAAAGAAAACAAGCGTCTACTAGAAAAGTCTC AGAGGGTAGAAGCCATCATTACATCAATGCAGGCTACAGGTGCAGAGGAGGACCAGCTAC AAGAAATAGAGGAGATGATCACAGCCCCTGAACGCCAGCAGCTAGAGACCCTGAAACGCA ATGTCAGCAAGTTGGATGCCTGTGAGATCCAGGTGGATGAAACCATCTTCCTGCTAGAAT CATACATCGAGAGCACCATGAAGAGACAATAACCCAGAAGAAAAGTCTTCCTCAAAAGAT CTGAAGAGTTTGGAAGGAGAAATAAAGGAGGTGCCTAGATGCATTCTTTGCAATGGATAA GTCGCAGAGTCTTATACTGTAACCCCATCTCTATCCTTACCACCCAGAATACAGGAAGAG TTTGACATCTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGACGAAGATGCTACCGGGGAACCCAAGGCCAAGAGACCAAAACATGCCACAGATAACA AAGAGCCCAGCCCAGATGATGGGATTTATTGGCAGGCCAATCTTGACAGATTCCACCAGC ACTTCCGTGACCAAGCCATTGTCAGTGCAGTTGCCAACAGGATGGACCAGACCAGCAGCG AGATTGTGCGGACCATGCTCCGGATGAGTGAGATCACCACTTCCTCTAGTGCCCCCTTCA CTCAGCCGTTGTCTTCCAATGAGATCTTCAGATCCCTCCCTGTTGGCTATAACATCTCTA AGCAAGTTCTTGATCAGTATCTCACTCTGCTGGCAGATGATCCACTAGAGTTTGTTGGAA AGTCTGGCGACAGTGGTGGAGGAATGTATGTCATTAACCTACATAAGGCTTTAGGATCCC TGGCCACAGCCACTCTGGAGTCTGTCGTGCAGGAGAGATTTGGATCACGCTGTGCCAGAA TCTTCCGTCTAGTTTTGCAAAAGAAACACCTGGAGCAGAAGCAGGTAGAAGACTTTGCAA TGATTCCAGCAAAGGAGGCAAAGGATATGCTTTATAAGATGCTCTCAGAAAATTTCATGT CACTTCAGGAGATTCCCAAAACACCAGACCATGCCCCATCGAGGACCTTCTATTTATATA CTGTTAACATCCTGTCAGCTGCCCGAATGTTGCTGCACAAGTGCTATAAGAGTGTAGCCA ACTTAATAGAAAGGAGGCAGTTTGAAACCAAAGAAAACAAGCGTCTACTAGAAAAGTCTC AGAGGGTAGAAGCCATCATTACATCAATGCAGGCTACAGGTGCAGAGGAGGACCAGCTAC AAGAAATAGAGGAGATGATCACAGCCCCTGAACGCCAGCAGCTAGAGACCCTGAAACGCA ATGTCAGCAAGTTGGATGCCTGTGAGATCCAGGTGGATGAAACCATCTTCCTGCTAGAAT CATACATCGAGAGCACCATGAAGAGACAATAACCCAGAAGAAAAGTCTTCCTCAAAAGAT CTGAAGAGTTTGGAAGGAGAAATAAAGGAGGTGCCTAGATGCATTCTTTGCAATGGATAA GTCGCAGAGTCTTATACTGTAACCCCATCTCTATCCTTACCACCCAGAATACAGGAAGAG TTTGACATCTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 456-575, + strand, RNAz p=0.506636 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 456-575, + strand, RNAz p=0.506636 |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 64-170, gnl|bosTau2|chr3 (15507107-15507001) | |
| 64-170, gnl|canFam2|chr17 (61719935-61719837) | |
| 64-170, gnl|danRer3|chr16 (8296948-8297046) | |
| 64-170, gnl|dasNov1|scaffold_20788 (39922-40020) | |
| 64-170, gnl|echTel1|scaffold_322960 (5287-5189) | |
| 64-170, gnl|fr1|chrUn (185458095-185458192) | |
| 64-170, gnl|hg17|chr1 (143090790-143090888) | |
| 64-170, gnl|Hg17|chr1 (143090898-143090792) | |
| 64-170, gnl|loxAfr1|scaffold_141500 (4109-4207) | |
| 64-170, gnl|mm7|chr3 (96593409-96593507) | |
| 64-170, gnl|Mm7|chr3 (96593517-96593411) | |
| 64-170, gnl|monDom2|scaffold_44 (2287924-2287826) | |
| 64-170, gnl|oryCun1|scaffold_210558 (71513-71611) | |
| 64-170, gnl|panTro1|chr1 (125556528-125556626) | |
| 64-170, gnl|rheMac2|chr1 (126039432-126039334) | |
| 64-170, gnl|rn3|chr2 (191482239-191482337) | |
| 64-170, gnl|tetNig1|chr8 (8122142-8122045) | |
| 64-170, gnl|xenTro1|scaffold_510 (74566-74664) | |
| 237-356, gnl|bosTau2|chr3 (15505048-15504932) | |
| 237-356, gnl|Hg17|chr1 (143087682-143087569) | |
| 237-356, gnl|Mm7|chr3 (96590722-96590606) | |
| 456-609, gnl|bosTau2|chr3 (15503657-15503504) | |
| 456-609, gnl|canFam2|chr17 (61723030-61722932) | |
| 456-609, gnl|danRer3|chr16 (8293299-8293396) | |
| 456-609, gnl|dasNov1|scaffold_86772 (1656-1733) | |
| 456-609, gnl|echTel1|scaffold_322960 (9205-9107) | |
| 456-609, gnl|fr1|chrUn (185457038-185457136) | |
| 456-609, gnl|hg17|chr1 (143085946-143086044) | |
| 456-609, gnl|Hg17|chr1 (143086100-143085947) | |
| 456-609, gnl|loxAfr1|scaffold_141500 (1134-1232) | |
| 456-609, gnl|mm7|chr3 (96589068-96589166) | |
| 456-609, gnl|Mm7|chr3 (96589222-96589069) | |
| 456-609, gnl|monDom2|scaffold_44 (2290672-2290574) | |
| 456-609, gnl|oryCun1|scaffold_210558 (66727-66825) | |
| 456-609, gnl|panTro1|chr1 (125551689-125551787) | |
| 456-609, gnl|rheMac2|chr1 (126044323-126044225) | |
| 456-609, gnl|rn3|chr2 (191478586-191478684) | |
| 456-609, gnl|tetNig1|chr8 (8122996-8122898) | |
| 456-609, gnl|xenTro1|scaffold_510 (72396-72494) | |
| 757-955, gnl|bosTau2|chr3 (15502056-15501857) | |
| 757-955, gnl|Hg17|chr1 (143083236-143082972) | |
| 757-955, gnl|Mm7|chr3 (96587584-96587357) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 64-170, gnl|bosTau2|chr3 (15507107-15507001) | |
| 64-170, gnl|canFam2|chr17 (61719935-61719837) | |
| 64-170, gnl|danRer3|chr16 (8296948-8297046) | |
| 64-170, gnl|dasNov1|scaffold_20788 (39922-40020) | |
| 64-170, gnl|echTel1|scaffold_322960 (5287-5189) | |
| 64-170, gnl|fr1|chrUn (185458095-185458192) | |
| 64-170, gnl|hg17|chr1 (143090790-143090888) | |
| 64-170, gnl|Hg17|chr1 (143090898-143090792) | |
| 64-170, gnl|loxAfr1|scaffold_141500 (4109-4207) | |
| 64-170, gnl|mm7|chr3 (96593409-96593507) | |
| 64-170, gnl|Mm7|chr3 (96593517-96593411) | |
| 64-170, gnl|monDom2|scaffold_44 (2287924-2287826) | |
| 64-170, gnl|oryCun1|scaffold_210558 (71513-71611) | |
| 64-170, gnl|panTro1|chr1 (125556528-125556626) | |
| 64-170, gnl|rheMac2|chr1 (126039432-126039334) | |
| 64-170, gnl|rn3|chr2 (191482239-191482337) | |
| 64-170, gnl|tetNig1|chr8 (8122142-8122045) | |
| 64-170, gnl|xenTro1|scaffold_510 (74566-74664) | |
| 237-356, gnl|bosTau2|chr3 (15505048-15504932) | |
| 237-356, gnl|Hg17|chr1 (143087682-143087569) | |
| 237-356, gnl|Mm7|chr3 (96590722-96590606) | |
| 456-609, gnl|bosTau2|chr3 (15503657-15503504) | |
| 456-609, gnl|canFam2|chr17 (61723030-61722932) | |
| 456-609, gnl|danRer3|chr16 (8293299-8293396) | |
| 456-609, gnl|dasNov1|scaffold_86772 (1656-1733) | |
| 456-609, gnl|echTel1|scaffold_322960 (9205-9107) | |
| 456-609, gnl|fr1|chrUn (185457038-185457136) | |
| 456-609, gnl|hg17|chr1 (143085946-143086044) | |
| 456-609, gnl|Hg17|chr1 (143086100-143085947) | |
| 456-609, gnl|loxAfr1|scaffold_141500 (1134-1232) | |
| 456-609, gnl|mm7|chr3 (96589068-96589166) | |
| 456-609, gnl|Mm7|chr3 (96589222-96589069) | |
| 456-609, gnl|monDom2|scaffold_44 (2290672-2290574) | |
| 456-609, gnl|oryCun1|scaffold_210558 (66727-66825) | |
| 456-609, gnl|panTro1|chr1 (125551689-125551787) | |
| 456-609, gnl|rheMac2|chr1 (126044323-126044225) | |
| 456-609, gnl|rn3|chr2 (191478586-191478684) | |
| 456-609, gnl|tetNig1|chr8 (8122996-8122898) | |
| 456-609, gnl|xenTro1|scaffold_510 (72396-72494) | |
| 757-955, gnl|bosTau2|chr3 (15502056-15501857) | |
| 757-955, gnl|Hg17|chr1 (143083236-143082972) | |
| 757-955, gnl|Mm7|chr3 (96587584-96587357) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| gul (0.355177) | |
| lnt (0.284616) | |
| sag (0.182715) | |
| rec (0.17307) | |
| pty (0.142714) | |
| thg (0.126791) | |
| spc (0.113366) | |
| cty (0.10408) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| gul (0.355177) | |
| lnt (0.284616) | |
| sag (0.182715) | |
| rec (0.17307) | |
| pty (0.142714) | |
| thg (0.126791) | |
| spc (0.113366) | |
| cty (0.10408) |