Non-Coding RNA Search

Ss1.1-Pig4-TMW8063N23.3

Sequence:


               
               CCAAAATGCTGGCCACAGCTTGTTGGAGTGGGCTTTGCAAGCTCTGGTCTGTTCCTGATT
GCAATCTCCTTCACACTCTTCGAGGCCATAACACAAATGTGGGAGCAATTGTCTTCCATC
CGAAATCCACTGTCTCCTTGGACCAAAAAGATGTCAATCTGGCCTCTTGTGCTGCTGATG
GTTCTGTGAAGCTTTGGAGCCTTGACAGTGATGAACCAGTGGCAGATATTGAAGGCCATA
CAGTACGTGTGGCTCGTGTAATGTGGCATCCATCAGGACGCTTCTTAGGTACCACCTGCT
ATGACCGTTCATGGCGCTTATGGGATTTGGAGGCTCAAGAAGAGATCCTGCATCAGGAAG
GCCACAGCATGGGTGTGTATGACATTGCCTTCCATCAAGATGGCTCTTTGGCTGGCACCG
GGGGACTGGATGCATTTGGTCGAGTTTGGGACCTGCGCACGGGACGTTGTATCATGTTCC
TCGAAGGCCACCTGAAGGAGATCTATGGAATAAATTTCTCCCCCAATGGCTACCACATTG
CAACTGGCAGTGGTGACAACACCTGCAAAGTGTGGGACCTTCGGCAACGGCGTTGTGTCT
ATACCATTCCTGCCCATCAGAACTTAGTAACTGGTGTCAAGTTTGAGCCTATCCATGGGA
ATTTCTTGCTCACTGGTGCCTATGATAACACAGCCAAGATCTGGACCCACCCAGGCTGGT
CCCCACTGAAGACCTTGGCCGGCCATGAAGGCAAAGTGATGGGCCTAGACATTTCTTCCG
ATGGGCAGCTCATAGCCACTTGTTCATATGACAGGACCTTCAAGCTCTGGATGGCCGAAT
AGGCAGGACCATAGAAAAAGGACGCTACCTCCCTCTCACAGAGCCATTTTCAAAAGAAAG
GAATCGATGTGTTTTGTTCTATCATGTTTTTGCCAGTTACCATGCATAGATCCGCAAAAG
AGTTGGATTTCCACGTCAGCTCCCACTGTAGGCAGGCCGCCCCCTCCTTGGGTGTTGATG
ATAAACCCCTTTCATGGTTGAAATTTTAATTTTCATCTTCAGGCCCTGCCACGAACTGTG
TGGACATTGTGTTTCTTAATCCTTTGTTTGGATGCCCTGTTGCCTCCCTCACAGTACTCA
GGATTCCATTTTGAATTCTTGAAACTTGACTTTCCATTACATGGTACATGCTTCAGGACC
ACACGTGACCCAGAGAGCAAGGGCTGGGCTATAGTCTGAGCAGAGAGGCACATCTCACCA
CGCGCTGGCTAAACAGTGGCTGGCAGAGCAAGAACCCTGAGAGCGGAAGGTGAAGAGGTA
AACCACAGCTATGCTCGGGTTTTGTAGTTGAGCTTTTTACCTCTTCCTGTCGAGTTCACT
TGGAATGCTCATTGCACCAGGAAGCTCAGAAATAAACATTTGCCTCGTCACATAATGCCT
TCCATTTTGCTTGGAAGTTTGGCATCCTTTGTTGTTACCCAAAAGCTGGGCCAGTGTGAA
GAGTCAATGAAATTTTTAGAAAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAAAATGCTGGCCACAGCTTGTTGGAGTGGGCTTTGCAAGCTCTGGTCTGTTCCTGATT
GCAATCTCCTTCACACTCTTCGAGGCCATAACACAAATGTGGGAGCAATTGTCTTCCATC
CGAAATCCACTGTCTCCTTGGACCAAAAAGATGTCAATCTGGCCTCTTGTGCTGCTGATG
GTTCTGTGAAGCTTTGGAGCCTTGACAGTGATGAACCAGTGGCAGATATTGAAGGCCATA
CAGTACGTGTGGCTCGTGTAATGTGGCATCCATCAGGACGCTTCTTAGGTACCACCTGCT
ATGACCGTTCATGGCGCTTATGGGATTTGGAGGCTCAAGAAGAGATCCTGCATCAGGAAG
GCCACAGCATGGGTGTGTATGACATTGCCTTCCATCAAGATGGCTCTTTGGCTGGCACCG
GGGGACTGGATGCATTTGGTCGAGTTTGGGACCTGCGCACGGGACGTTGTATCATGTTCC
TCGAAGGCCACCTGAAGGAGATCTATGGAATAAATTTCTCCCCCAATGGCTACCACATTG
CAACTGGCAGTGGTGACAACACCTGCAAAGTGTGGGACCTTCGGCAACGGCGTTGTGTCT
ATACCATTCCTGCCCATCAGAACTTAGTAACTGGTGTCAAGTTTGAGCCTATCCATGGGA
ATTTCTTGCTCACTGGTGCCTATGATAACACAGCCAAGATCTGGACCCACCCAGGCTGGT
CCCCACTGAAGACCTTGGCCGGCCATGAAGGCAAAGTGATGGGCCTAGACATTTCTTCCG
ATGGGCAGCTCATAGCCACTTGTTCATATGACAGGACCTTCAAGCTCTGGATGGCCGAAT
AGGCAGGACCATAGAAAAAGGACGCTACCTCCCTCTCACAGAGCCATTTTCAAAAGAAAG
GAATCGATGTGTTTTGTTCTATCATGTTTTTGCCAGTTACCATGCATAGATCCGCAAAAG
AGTTGGATTTCCACGTCAGCTCCCACTGTAGGCAGGCCGCCCCCTCCTTGGGTGTTGATG
ATAAACCCCTTTCATGGTTGAAATTTTAATTTTCATCTTCAGGCCCTGCCACGAACTGTG
TGGACATTGTGTTTCTTAATCCTTTGTTTGGATGCCCTGTTGCCTCCCTCACAGTACTCA
GGATTCCATTTTGAATTCTTGAAACTTGACTTTCCATTACATGGTACATGCTTCAGGACC
ACACGTGACCCAGAGAGCAAGGGCTGGGCTATAGTCTGAGCAGAGAGGCACATCTCACCA
CGCGCTGGCTAAACAGTGGCTGGCAGAGCAAGAACCCTGAGAGCGGAAGGTGAAGAGGTA
AACCACAGCTATGCTCGGGTTTTGTAGTTGAGCTTTTTACCTCTTCCTGTCGAGTTCACT
TGGAATGCTCATTGCACCAGGAAGCTCAGAAATAAACATTTGCCTCGTCACATAATGCCT
TCCATTTTGCTTGGAAGTTTGGCATCCTTTGTTGTTACCCAAAAGCTGGGCCAGTGTGAA
GAGTCAATGAAATTTTTAGAAAGC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61837917|ref|XP_585560.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61837917|ref|XP_585560.1|

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1524, gnl|bosTau2|chr4 (12971333-12972873)
               

               
               1-1524, gnl|Hg17|chr9 (113126199-113134520)
               

               
               1-1524, gnl|Mm7|chr4 (61849730-61858084)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1524, gnl|bosTau2|chr4 (12971333-12972873)
               

               
               1-1524, gnl|Hg17|chr9 (113126199-113134520)
               

               
               1-1524, gnl|Mm7|chr4 (61849730-61858084)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

Help | Less info


               
               cte (0.29274)
               

               
               ece (0.229305)
               

               
               fty (0.17584)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ret (0.128733)
               

               
               cbr (0.127975)
               

               
               cly (0.120642)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               ece (0.229305)
               

               
               fty (0.17584)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ret (0.128733)
               

               
               cbr (0.127975)
               

               
               cly (0.120642)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	1-1524, gnl\|bosTau2\|chr4 (12971333-12972873)
	1-1524, gnl\|Hg17\|chr9 (113126199-113134520)
	1-1524, gnl\|Mm7\|chr4 (61849730-61858084)

	cte (0.29274)
	ece (0.229305)
	fty (0.17584)
	lun (0.150489)
	ski (0.146735)
	lnt (0.142308)
	hlv (0.139256)
	che (0.136314)
	ret (0.128733)
	cbr (0.127975)
	cly (0.120642)
	cbl (0.114797)
	spc (0.113366)
	eje (0.0988338)