Non-Coding RNA Search

Ss1.1-Pig4-TMW8063O03.5

Sequence:


               
               TTAGAGAACGACTCCTGCAGAAGACGACCTGGGAGCTAAATTTTTTGGACAGTTTGGGGT
GACTCCTGCAGAAGACGACCTGGGAGCTAAATTTTTTGGACAGTTTGGGGTTAGCTGGGG
AAAAAAGGAAGAAGACAGAGCATTCCAGGCATTGGGACAGTCGTATGTATCTGGCAAGAG
CAAAGCTGCAGGAAAATGGACAGTGAGGTACAGAGAGATGGAAGGATCTTGGATTTGATT
GACGATGCTTGGCGAGAGGACAAGCTGCCTTATGAAGATGTTGCAATACCACTGAATGAG
CTTCCTGAACCTGAACAGGACAATGGCGGCACCACAGAATCTGTTAAAGAACAAGAAATG
AAGTGGACTGACTTGGCCTTACAGTATCTCCATGAGAATGTACCCCCCATAGGAAACTGA
CGCCTGGCTCCTTGTTCATGGACGGATTTTTTTTTTTTTAATACATAGCAAAATGTTTTC
TGTCAGTGTCCGAATTCGTATCTTTTAGTCATAGATCAACACTCAAAAATGTACATTGGC
TTATTTTGTAGCAGCAAAATGCAATGTGAAAATACTCCCCAGAATGAGAAGCTGATTGAG
ATTTCTCAGGAATGCAGCATATCTGACTCTTTGAACCTAAAGTTCTTCATTGACTAGCTT
GTGTTTGAACATGATTCATTAAACATTTGCCTTTAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAGAGAACGACTCCTGCAGAAGACGACCTGGGAGCTAAATTTTTTGGACAGTTTGGGGT
GACTCCTGCAGAAGACGACCTGGGAGCTAAATTTTTTGGACAGTTTGGGGTTAGCTGGGG
AAAAAAGGAAGAAGACAGAGCATTCCAGGCATTGGGACAGTCGTATGTATCTGGCAAGAG
CAAAGCTGCAGGAAAATGGACAGTGAGGTACAGAGAGATGGAAGGATCTTGGATTTGATT
GACGATGCTTGGCGAGAGGACAAGCTGCCTTATGAAGATGTTGCAATACCACTGAATGAG
CTTCCTGAACCTGAACAGGACAATGGCGGCACCACAGAATCTGTTAAAGAACAAGAAATG
AAGTGGACTGACTTGGCCTTACAGTATCTCCATGAGAATGTACCCCCCATAGGAAACTGA
CGCCTGGCTCCTTGTTCATGGACGGATTTTTTTTTTTTTAATACATAGCAAAATGTTTTC
TGTCAGTGTCCGAATTCGTATCTTTTAGTCATAGATCAACACTCAAAAATGTACATTGGC
TTATTTTGTAGCAGCAAAATGCAATGTGAAAATACTCCCCAGAATGAGAAGCTGATTGAG
ATTTCTCAGGAATGCAGCATATCTGACTCTTTGAACCTAAAGTTCTTCATTGACTAGCTT
GTGTTTGAACATGATTCATTAAACATTTGCCTTTAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|13529287|gb|AAH05398.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13529287|gb|AAH05398.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               273-531, gnl|bosTau2|chr17 (32183315-32183057)
               

               
               273-531, gnl|Hg17|chr20 (11767047-11767337)
               

               
               273-531, gnl|Mm7|chrX (76053006-76053285)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               273-531, gnl|bosTau2|chr17 (32183315-32183057)
               

               
               273-531, gnl|Hg17|chr20 (11767047-11767337)
               

               
               273-531, gnl|Mm7|chrX (76053006-76053285)

Expressed library(ies): 34 entry(ies)

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Expressed library(ies): 34 entry(ies)

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               clu (1.07681)
               

               
               pro (1.02407)
               

               
               fli (0.405762)
               

               
               jej (0.395687)
               

               
               pgl (0.35545)
               

               
               gul (0.355177)
               

               
               rec (0.346141)
               

               
               ste (0.270416)
               

               
               ova (0.258264)
               

               
               ret (0.257467)
               

               
               sug (0.254582)
               

               
               thg (0.253582)
               

               
               aor (0.195274)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               mga (0.160205)
               

               
               eli (0.151814)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               nca (0.136874)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 34 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (1.07681)
               

               
               pro (1.02407)
               

               
               fli (0.405762)
               

               
               jej (0.395687)
               

               
               pgl (0.35545)
               

               
               gul (0.355177)
               

               
               rec (0.346141)
               

               
               ste (0.270416)
               

               
               ova (0.258264)
               

               
               ret (0.257467)
               

               
               sug (0.254582)
               

               
               thg (0.253582)
               

               
               aor (0.195274)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               mga (0.160205)
               

               
               eli (0.151814)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               nca (0.136874)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	273-531, gnl\|bosTau2\|chr17 (32183315-32183057)
	273-531, gnl\|Hg17\|chr20 (11767047-11767337)
	273-531, gnl\|Mm7\|chrX (76053006-76053285)

	clu (1.07681)
	pro (1.02407)
	fli (0.405762)
	jej (0.395687)
	pgl (0.35545)
	gul (0.355177)
	rec (0.346141)
	ste (0.270416)
	ova (0.258264)
	ret (0.257467)
	sug (0.254582)
	thg (0.253582)
	aor (0.195274)
	fty (0.17584)
	ill (0.175593)
	duo (0.172801)
	cut (0.169924)
	nje (0.16592)
	cki (0.165235)
	mga (0.160205)
	eli (0.151814)
	liv (0.146284)
	lin (0.145603)
	nca (0.136874)
	ese (0.126502)
	bla (0.124347)
	eru (0.120048)
	ebs (0.118301)
	ecc (0.115035)
	jca (0.11396)
	spc (0.113366)
	nbm (0.0993246)
	eje (0.0988338)
	ldo (0.0970026)