Non-Coding RNA Search

Ss1.1-Pig4-TMW8063O04.3

Sequence:


               
               CATTAAATGGGAGAGTCACAGAGGGATCCCTCCAAGGCAGCCAGTGACAGACCCCAAGGC
CCTTTGCCTTGTCTGTAGTCCAGAGGCTCCCTCCTGGATGTTCGGTGAAATCACTTTCCA
GCTGCTAGAATTAGCAGCACGTAGACAGCCCTAGCTGTTCGTGTTCTCTTTTTATTTTTG
TTTTTTTAAACTTTAATCTTTGGGTCCTTAAAGTTGATTTAAAAATCAGTCACACTGAAA
ATGATACCCCCAAATTGCTTCCATATGATTCAGAAACACTAGGTAAAGCCTTCTGAACTA
GTCTTTGCTCTTCCCATAATACAAAGAGTTGTACTTATTTCAACACATAGACACTCCCAA
TTCTCTCTAAATTGAAGGTTGGGTCTGGGGGGGAAGGTAGAATATAGTGGGTGTAATTTT
GTTCACTTGAACAGGGGGAATGGTATATTGGCACTTGTCACAAATGTTTGTTCTTTCTCT
ACCGAGGGCAAAACATTATACTCTATAGCCTAGAGTATTCAGGGTAGGCCACAGACAGAA
CTGATTGCTTATGGGTCTTAAAGATACAATATGCCTTCGATGCTATGGATATGTAAGTCA
TTTCTTTAAGCAAGGGCCTTATTTCAAAGCAAGTAACCTATATTTCAATGATAAATTCAT
GTAAACACTTTTGCAACTGTAATAGCTGTTACAGGTACCATCATTTTTTCACCGTTTTCC
ATTGGTGGCTAAGTTTATTTGTATCCATTTTATAGTAAAACTGGCATTAGAAGGAAACCA
GTTCTAAAACCCTTGCTACTACTTGGTCTCCAGTGATCTGTAAATCAAGACATACAGCAT
CAGCTGATGAAGACTGCTGAAGAGAAGAGAGGAAACTGGTTTGCTCACAGCTGGCCACAT
CTGTGACGCATAAGGACATGGAATGTGGATGCTTCACGCTCCTGACCAACCACTGGCTTT
TCTACGGTAGTCCTTCTTTTCACAGTCCTATTGCTTAACCACATAACACCCTTTACCATT
CAGAGATCAGGGCTGAAAATACAACTACCAGGTCTTCCTAGAATTCCAGTATGGCTAAAC
TGCACCTCAGATCACTTTTGAACAGCTCCTCCTCTGGAATTGGTGTCTGAATTTTCCCGC
CCAAGTGGTGACCAGGTCTTATCCCAGCTCAAGATCCTAGAGTCGGATTCTTCTCTTGTT
CCACATCTAGAGGTCCATCTCCAGAGGTCCCCCCTGGTACCATGATGTGCTTCTGCACAC
AGAGCTGTGCTCACCCCTGGTTACTTTAACATCTCGCAGACTTCCTACGAGAGGGGTAGT
TGTTGCTGACTGTTTGCGGTACAATTTGGTTTCATTGTTTTGGAGATCTTGGCTGAAATA
AATGAAGAGATATTTAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTAAATGGGAGAGTCACAGAGGGATCCCTCCAAGGCAGCCAGTGACAGACCCCAAGGC
CCTTTGCCTTGTCTGTAGTCCAGAGGCTCCCTCCTGGATGTTCGGTGAAATCACTTTCCA
GCTGCTAGAATTAGCAGCACGTAGACAGCCCTAGCTGTTCGTGTTCTCTTTTTATTTTTG
TTTTTTTAAACTTTAATCTTTGGGTCCTTAAAGTTGATTTAAAAATCAGTCACACTGAAA
ATGATACCCCCAAATTGCTTCCATATGATTCAGAAACACTAGGTAAAGCCTTCTGAACTA
GTCTTTGCTCTTCCCATAATACAAAGAGTTGTACTTATTTCAACACATAGACACTCCCAA
TTCTCTCTAAATTGAAGGTTGGGTCTGGGGGGGAAGGTAGAATATAGTGGGTGTAATTTT
GTTCACTTGAACAGGGGGAATGGTATATTGGCACTTGTCACAAATGTTTGTTCTTTCTCT
ACCGAGGGCAAAACATTATACTCTATAGCCTAGAGTATTCAGGGTAGGCCACAGACAGAA
CTGATTGCTTATGGGTCTTAAAGATACAATATGCCTTCGATGCTATGGATATGTAAGTCA
TTTCTTTAAGCAAGGGCCTTATTTCAAAGCAAGTAACCTATATTTCAATGATAAATTCAT
GTAAACACTTTTGCAACTGTAATAGCTGTTACAGGTACCATCATTTTTTCACCGTTTTCC
ATTGGTGGCTAAGTTTATTTGTATCCATTTTATAGTAAAACTGGCATTAGAAGGAAACCA
GTTCTAAAACCCTTGCTACTACTTGGTCTCCAGTGATCTGTAAATCAAGACATACAGCAT
CAGCTGATGAAGACTGCTGAAGAGAAGAGAGGAAACTGGTTTGCTCACAGCTGGCCACAT
CTGTGACGCATAAGGACATGGAATGTGGATGCTTCACGCTCCTGACCAACCACTGGCTTT
TCTACGGTAGTCCTTCTTTTCACAGTCCTATTGCTTAACCACATAACACCCTTTACCATT
CAGAGATCAGGGCTGAAAATACAACTACCAGGTCTTCCTAGAATTCCAGTATGGCTAAAC
TGCACCTCAGATCACTTTTGAACAGCTCCTCCTCTGGAATTGGTGTCTGAATTTTCCCGC
CCAAGTGGTGACCAGGTCTTATCCCAGCTCAAGATCCTAGAGTCGGATTCTTCTCTTGTT
CCACATCTAGAGGTCCATCTCCAGAGGTCCCCCCTGGTACCATGATGTGCTTCTGCACAC
AGAGCTGTGCTCACCCCTGGTTACTTTAACATCTCGCAGACTTCCTACGAGAGGGGTAGT
TGTTGCTGACTGTTTGCGGTACAATTTGGTTTCATTGTTTTGGAGATCTTGGCTGAAATA
AATGAAGAGATATTTAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-611, gnl|bosTau2|chr4 (53692592-53691982)
               

               
               1-611, gnl|Hg17|chr7 (133821536-133822195)
               

               
               1-611, gnl|Mm7|chr6 (34436090-34436657)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-611, gnl|bosTau2|chr4 (53692592-53691982)
               

               
               1-611, gnl|Hg17|chr7 (133821536-133822195)
               

               
               1-611, gnl|Mm7|chr6 (34436090-34436657)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

Help | Less info


               
               tbr (0.462535)
               

               
               vin (0.332557)
               

               
               sme (0.305437)
               

               
               spl (0.286369)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               eli (0.151814)
               

               
               fat (0.147427)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.462535)
               

               
               vin (0.332557)
               

               
               sme (0.305437)
               

               
               spl (0.286369)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               eli (0.151814)
               

               
               fat (0.147427)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	1-611, gnl\|bosTau2\|chr4 (53692592-53691982)
	1-611, gnl\|Hg17\|chr7 (133821536-133822195)
	1-611, gnl\|Mm7\|chr6 (34436090-34436657)

	tbr (0.462535)
	vin (0.332557)
	sme (0.305437)
	spl (0.286369)
	fcc (0.197785)
	nep (0.183925)
	gul (0.177588)
	eli (0.151814)
	fat (0.147427)
	kid (0.129735)
	sug (0.127291)
	thg (0.126791)
	ese (0.126502)
	eep (0.122564)
	cty (0.10408)
	nbm (0.0993246)