Non-Coding RNA Search

Ss1.1-Pig4-TMW8064A08.3

Sequence:


               
               CTTCCCCAGCCTCTGGCGCTGCTGGAGTCCACCTGCTGCAATTGGAGGGCAGCACCTGCC
CGTGTGGCCCGCACTTGGCAGTGACGGCCATGTCCATCACCCAGCACCAGTCCGGCGCGT
CTGCGAAAGAGCTGGCGCTGCTGCAGGACGTGGAAAGCGAGAAGGAGAACCACACTGTGG
ATATGGTCGATCCCGTCGAGATGGTAGAGGAGACCGCCTGGATTAAGGAGCCCGTGGATC
ATGGCAGCTCGCCCATGACCGATTTTGGGAATGGGATTGCCTTCAGCATTGAAACCTCCC
ACATGTGCATGTCACCCCTTGCAGAAAGCAGCGTCATTCCTTGTGAAAGCAGTAACACTC
AGATGGATAGCGGTTATAACACACAGAGTTGTGGAAGGAAATTTGCATTCAGGTTTTAAA
AAACAGTGTACATAATTGTTGTATCCTTGAATGGTCCTATTTAAACTGAAAATAAGGTAT
TTCCTTTTTCACAGCAAGATCACCCAACGCAACGGTGTTGGATGAAAATGGCAAATCCTC
CTCGGTGCAGCAGTCCATAGAATACCTCTCAGAACAAGACTATCACTGGACAGCTTCTCT
CCTATTTTTAACGCACGGGATCAATAATGTGATGGTGATTGGGAAAAAAATTGCTTCAAC
TAACATGCTTGGCTTTTTTTCTTCCCCTCAATGTGAAAAATCAAGGGCTTAATTTTAGTG
ACACAGGAACAACAGAAAAGCGCCTGGAACTTTCAGCAAGTTACTAAAGTACAAGTTCAT
TTTTTTATCAATAAATATTTTTGTACTTACCTCGAGTGATGTGTTTAACAATAAAAAACT
TGAGTGATGACTTTGCCTCTATCCTGCGGGGTCAGTGAAGTGCTTCTTCGTGAGCCTTAC
TCACAGCACTAAATTTAGCAGTTCTGGGAACATGGACTATGAAGGTGCTGTTTTATTTTA
CATAAAAATATGTAATACAGATGAATTCAAACTTACAACCTTCGTGAAAGAAAGAAATCT
GACTTAGCTTCCTAAAACAAACTTAATTGAAGACATGGAAAAGAGGTTTAGTAGGTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCCCCAGCCTCTGGCGCTGCTGGAGTCCACCTGCTGCAATTGGAGGGCAGCACCTGCC
CGTGTGGCCCGCACTTGGCAGTGACGGCCATGTCCATCACCCAGCACCAGTCCGGCGCGT
CTGCGAAAGAGCTGGCGCTGCTGCAGGACGTGGAAAGCGAGAAGGAGAACCACACTGTGG
ATATGGTCGATCCCGTCGAGATGGTAGAGGAGACCGCCTGGATTAAGGAGCCCGTGGATC
ATGGCAGCTCGCCCATGACCGATTTTGGGAATGGGATTGCCTTCAGCATTGAAACCTCCC
ACATGTGCATGTCACCCCTTGCAGAAAGCAGCGTCATTCCTTGTGAAAGCAGTAACACTC
AGATGGATAGCGGTTATAACACACAGAGTTGTGGAAGGAAATTTGCATTCAGGTTTTAAA
AAACAGTGTACATAATTGTTGTATCCTTGAATGGTCCTATTTAAACTGAAAATAAGGTAT
TTCCTTTTTCACAGCAAGATCACCCAACGCAACGGTGTTGGATGAAAATGGCAAATCCTC
CTCGGTGCAGCAGTCCATAGAATACCTCTCAGAACAAGACTATCACTGGACAGCTTCTCT
CCTATTTTTAACGCACGGGATCAATAATGTGATGGTGATTGGGAAAAAAATTGCTTCAAC
TAACATGCTTGGCTTTTTTTCTTCCCCTCAATGTGAAAAATCAAGGGCTTAATTTTAGTG
ACACAGGAACAACAGAAAAGCGCCTGGAACTTTCAGCAAGTTACTAAAGTACAAGTTCAT
TTTTTTATCAATAAATATTTTTGTACTTACCTCGAGTGATGTGTTTAACAATAAAAAACT
TGAGTGATGACTTTGCCTCTATCCTGCGGGGTCAGTGAAGTGCTTCTTCGTGAGCCTTAC
TCACAGCACTAAATTTAGCAGTTCTGGGAACATGGACTATGAAGGTGCTGTTTTATTTTA
CATAAAAATATGTAATACAGATGAATTCAAACTTACAACCTTCGTGAAAGAAAGAAATCT
GACTTAGCTTCCTAAAACAAACTTAATTGAAGACATGGAAAAGAGGTTTAGTAGGTTTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9H640_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9H640_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               395-509, - strand, RNAz p=0.685543

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               395-509, - strand, RNAz p=0.685543

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               4-362, gnl|bosTau2|chr12 (21777234-21776876)
               

               
               4-362, gnl|canFam2|chr22 (29846225-29846698)
               

               
               4-362, gnl|dasNov1|scaffold_26099 (8750-8274)
               

               
               4-362, gnl|echTel1|scaffold_289546 (41445-40987)
               

               
               4-362, gnl|galGal2|chr1 (152932815-152932357)
               

               
               4-362, gnl|hg17|chr13 (72218788-72219261)
               

               
               4-362, gnl|Hg17|chr13 (72218892-72219250)
               

               
               4-362, gnl|mm7|chr14 (93468601-93469026)
               

               
               4-362, gnl|Mm7|chr14 (93468696-93469015)
               

               
               4-362, gnl|monDom2|scaffold_8 (9003708-9004190)
               

               
               4-362, gnl|panTro1|chr14 (54763615-54764088)
               

               
               4-362, gnl|rheMac2|chr17 (53193235-53193708)
               

               
               4-362, gnl|rn3|chr15 (82863488-82863955)
               

               
               4-362, gnl|xenTro1|scaffold_107 (856029-855583)
               


               
               395-1027, gnl|bosTau2|chr12 (21771332-21770695)
               

               
               395-1027, gnl|Hg17|chr13 (72227191-72227812)
               

               
               395-1027, gnl|Mm7|chr14 (93473973-93474510)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-362, gnl|bosTau2|chr12 (21777234-21776876)
               

               
               4-362, gnl|canFam2|chr22 (29846225-29846698)
               

               
               4-362, gnl|dasNov1|scaffold_26099 (8750-8274)
               

               
               4-362, gnl|echTel1|scaffold_289546 (41445-40987)
               

               
               4-362, gnl|galGal2|chr1 (152932815-152932357)
               

               
               4-362, gnl|hg17|chr13 (72218788-72219261)
               

               
               4-362, gnl|Hg17|chr13 (72218892-72219250)
               

               
               4-362, gnl|mm7|chr14 (93468601-93469026)
               

               
               4-362, gnl|Mm7|chr14 (93468696-93469015)
               

               
               4-362, gnl|monDom2|scaffold_8 (9003708-9004190)
               

               
               4-362, gnl|panTro1|chr14 (54763615-54764088)
               

               
               4-362, gnl|rheMac2|chr17 (53193235-53193708)
               

               
               4-362, gnl|rn3|chr15 (82863488-82863955)
               

               
               4-362, gnl|xenTro1|scaffold_107 (856029-855583)
               


               
               395-1027, gnl|bosTau2|chr12 (21771332-21770695)
               

               
               395-1027, gnl|Hg17|chr13 (72227191-72227812)
               

               
               395-1027, gnl|Mm7|chr14 (93473973-93474510)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

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               mgp (0.461361)
               

               
               fco (0.314416)
               

               
               ret (0.257467)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.461361)
               

               
               fco (0.314416)
               

               
               ret (0.257467)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	4-362, gnl\|bosTau2\|chr12 (21777234-21776876)
	4-362, gnl\|canFam2\|chr22 (29846225-29846698)
	4-362, gnl\|dasNov1\|scaffold_26099 (8750-8274)
	4-362, gnl\|echTel1\|scaffold_289546 (41445-40987)
	4-362, gnl\|galGal2\|chr1 (152932815-152932357)
	4-362, gnl\|hg17\|chr13 (72218788-72219261)
	4-362, gnl\|Hg17\|chr13 (72218892-72219250)
	4-362, gnl\|mm7\|chr14 (93468601-93469026)
	4-362, gnl\|Mm7\|chr14 (93468696-93469015)
	4-362, gnl\|monDom2\|scaffold_8 (9003708-9004190)
	4-362, gnl\|panTro1\|chr14 (54763615-54764088)
	4-362, gnl\|rheMac2\|chr17 (53193235-53193708)
	4-362, gnl\|rn3\|chr15 (82863488-82863955)
	4-362, gnl\|xenTro1\|scaffold_107 (856029-855583)

	395-1027, gnl\|bosTau2\|chr12 (21771332-21770695)
	395-1027, gnl\|Hg17\|chr13 (72227191-72227812)
	395-1027, gnl\|Mm7\|chr14 (93473973-93474510)

	mgp (0.461361)
	fco (0.314416)
	ret (0.257467)
	fty (0.17584)
	sin (0.174948)
	rec (0.17307)
	lin (0.145603)
	lnt (0.142308)
	csk (0.140746)
	lyg (0.133103)
	thg (0.126791)
	tra (0.123092)
	nbm (0.0993246)
	eje (0.0988338)