Ss1.1-Pig4-TMW8064A16.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGGCCACCGCCGCCGCCGCCGCCATGCAGCCCCCCAGCCTGCTGCTGCTCGCCCTCGGC CTCCTGGCCGCGCCCGCCGCCGCGCTCATCAGAATCCCACTGCACAAGTTCACGTCCATC CGCCGGACCATGTCGGAAGTGGGCGGCCCCGTGGAGAACCTGATTGCCAAGGGCCCCATT TCAAAATACTCCCAGGGGGTGCCTGCTGTGACCCAAGGGCCCATCCCCGAGGTGCTCAAG AACTACATGGACGCGCAGTACTACGGGGAGATCGGCATCGGGACCCCCCCGCAGTGCTTC ACCGTCGTCTTCGACACCGGCTCCTCCAACCTGTGGGTGCCCTCCATCCACTGCAAGCTG CTGGACATCGCCTGCTGGATCCACCACAAGTACAACAGCGGCAAGTCCAGCACGTACGTG AAGAACGGCACCACCTTCGCCATCCACTACGGCTCCGGCAGCCTGTCCGGGTACCTGAGC CAGGACACCGTGTCGGTGCCCTGTAATTCTGCGTCGTCGGGCGTGGGCGGCATCAAGGTC GAGAGGCAGACCTTCGGGGAGGCCACCAAGCAGCCGGGCCTCACCTTCATCGCGGCCAAG TTCGATGGCATCCTGGGCATGGCCTACCCCCGCATCTCCGTGAACAACGTGGTACCCGTC TTCGATAACCTGATGCAGCAGAAGCTGGTGGACAAGAATATCTTCTCCTTCTACCTGAAC AGGGACCCAGGTGCGCAGCCGGGGGGCGAGCTGATGCTGGGCGGCATTGACTCCAAGTAC TACAAAGGCTCCCTGGACTATCACAACGTCACGCGCAAGGCCTACTGGCAGATCCACATG GACCAGGTGGCTGTGGGCAGCAGCCTGACCCTGTGCAAGGGGGGCTGTGAGGCCATCGTG GACACGGGCACGTCCCTCATCGTGGGCCCCGTGGAAGAGGTGCGTGAGCTGCAGAAGGCC ATCGGGGCCGTGCCGCTGATCCAGGGCGAGTACATGATCCCCTGTGAGAAGGTGCCCAGC CTGCCCGACGTCACCGTGACGCTGGGGGGGAAGAAGTACAAACTGTCCTCGGAGAACTAC ACGCTCAAGGTGTCGCAGGCCGGGCAGACCATCTGCCTGAGCGGCTTCATGGGCATGGAC ATCCCGCCGCCCGGCGGGCCGCTCTGGATCCTGGGAGACGTTTTCATCGGCCGCTACTAC ACCGTGTTCGACCGGGACCTGAACCGGGTGGGCTTGGCCGAGGCGGCCACACTCTAGCTG GCCCCCTGCCGGCTGGCAGAGCCTGCGGGAGAGTCCAGGCGGCCACACCCCCGCCCTCCA GCCACCACGCCACACACACTCACACACTCACACTCGCAGCCCCGCTCGCTGGAGGCCGCC GGCCTGATGAGCCTGCTGTTCTGTTCCGTGGTGTCCCTCCCTGGTTCCAGAAATGCTGCC TGCTTGTCTGTCTGATGGGAGGACGGGCCCGGAGCAGAGCCAGTGGGCAGCTCTGACGCG CAGAGTCCTTGCTGGGCGGCTGGCCGGCTGTGCACCCTAGGAACCCCCGCCCCAGGGCAG GTCCCTCCCCGGCCAGCACCTTGGGGGCCTGGCCACCTGGCATGGCCTCTGGGCTGAGCC CTCGCCCAGCGCCAGGCTACCCTCTTGGTCCGTCCATCCAGCTCTCAGCCCTGCTGCCCC CACCCGTCGGTTTGTCCTGGACCTGACGAGGAAGGGGCCAGCTGAGGCCTGGGGACGAGC TGGCAGGGGTGGCAGGGGACAGAAGCCAGTCTTGTGAGGCCTGTGGGTCACCCTGGGGCT TGACTCCATTCGGGAGGACATGCCAGGCGTCCACGGGCCTAGGGGTAGGGCAGGAGGGGG CCTGGTACCAGCCTTCTCTGCGGCTGCCCCCTTCTTGAGTTGCCGGGAGCCAAAGTAGGT GTGAAAATACAGTTGTTTGGCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGGCCACCGCCGCCGCCGCCGCCATGCAGCCCCCCAGCCTGCTGCTGCTCGCCCTCGGC CTCCTGGCCGCGCCCGCCGCCGCGCTCATCAGAATCCCACTGCACAAGTTCACGTCCATC CGCCGGACCATGTCGGAAGTGGGCGGCCCCGTGGAGAACCTGATTGCCAAGGGCCCCATT TCAAAATACTCCCAGGGGGTGCCTGCTGTGACCCAAGGGCCCATCCCCGAGGTGCTCAAG AACTACATGGACGCGCAGTACTACGGGGAGATCGGCATCGGGACCCCCCCGCAGTGCTTC ACCGTCGTCTTCGACACCGGCTCCTCCAACCTGTGGGTGCCCTCCATCCACTGCAAGCTG CTGGACATCGCCTGCTGGATCCACCACAAGTACAACAGCGGCAAGTCCAGCACGTACGTG AAGAACGGCACCACCTTCGCCATCCACTACGGCTCCGGCAGCCTGTCCGGGTACCTGAGC CAGGACACCGTGTCGGTGCCCTGTAATTCTGCGTCGTCGGGCGTGGGCGGCATCAAGGTC GAGAGGCAGACCTTCGGGGAGGCCACCAAGCAGCCGGGCCTCACCTTCATCGCGGCCAAG TTCGATGGCATCCTGGGCATGGCCTACCCCCGCATCTCCGTGAACAACGTGGTACCCGTC TTCGATAACCTGATGCAGCAGAAGCTGGTGGACAAGAATATCTTCTCCTTCTACCTGAAC AGGGACCCAGGTGCGCAGCCGGGGGGCGAGCTGATGCTGGGCGGCATTGACTCCAAGTAC TACAAAGGCTCCCTGGACTATCACAACGTCACGCGCAAGGCCTACTGGCAGATCCACATG GACCAGGTGGCTGTGGGCAGCAGCCTGACCCTGTGCAAGGGGGGCTGTGAGGCCATCGTG GACACGGGCACGTCCCTCATCGTGGGCCCCGTGGAAGAGGTGCGTGAGCTGCAGAAGGCC ATCGGGGCCGTGCCGCTGATCCAGGGCGAGTACATGATCCCCTGTGAGAAGGTGCCCAGC CTGCCCGACGTCACCGTGACGCTGGGGGGGAAGAAGTACAAACTGTCCTCGGAGAACTAC ACGCTCAAGGTGTCGCAGGCCGGGCAGACCATCTGCCTGAGCGGCTTCATGGGCATGGAC ATCCCGCCGCCCGGCGGGCCGCTCTGGATCCTGGGAGACGTTTTCATCGGCCGCTACTAC ACCGTGTTCGACCGGGACCTGAACCGGGTGGGCTTGGCCGAGGCGGCCACACTCTAGCTG GCCCCCTGCCGGCTGGCAGAGCCTGCGGGAGAGTCCAGGCGGCCACACCCCCGCCCTCCA GCCACCACGCCACACACACTCACACACTCACACTCGCAGCCCCGCTCGCTGGAGGCCGCC GGCCTGATGAGCCTGCTGTTCTGTTCCGTGGTGTCCCTCCCTGGTTCCAGAAATGCTGCC TGCTTGTCTGTCTGATGGGAGGACGGGCCCGGAGCAGAGCCAGTGGGCAGCTCTGACGCG CAGAGTCCTTGCTGGGCGGCTGGCCGGCTGTGCACCCTAGGAACCCCCGCCCCAGGGCAG GTCCCTCCCCGGCCAGCACCTTGGGGGCCTGGCCACCTGGCATGGCCTCTGGGCTGAGCC CTCGCCCAGCGCCAGGCTACCCTCTTGGTCCGTCCATCCAGCTCTCAGCCCTGCTGCCCC CACCCGTCGGTTTGTCCTGGACCTGACGAGGAAGGGGCCAGCTGAGGCCTGGGGACGAGC TGGCAGGGGTGGCAGGGGACAGAAGCCAGTCTTGTGAGGCCTGTGGGTCACCCTGGGGCT TGACTCCATTCGGGAGGACATGCCAGGCGTCCACGGGCCTAGGGGTAGGGCAGGAGGGGG CCTGGTACCAGCCTTCTCTGCGGCTGCCCCCTTCTTGAGTTGCCGGGAGCCAAAGTAGGT GTGAAAATACAGTTGTTTGGCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 76 entry(ies) | More info |
| Aligned organism(s): 76 entry(ies) | Help | Less info |
| 69-251, gnl|bosTau2|chr29 (43990393-43990211) | |
| 69-251, gnl|canFam2|chr18 (49044414-49044582) | |
| 69-251, gnl|danRer3|chr18 (16785666-16785501) | |
| 69-251, gnl|dasNov1|scaffold_171393 (412-580) | |
| 69-251, gnl|echTel1|scaffold_119788 (252-81) | |
| 69-251, gnl|fr1|chrUn (23927225-23927388) | |
| 69-251, gnl|hg17|chr11 (1739110-1739278) | |
| 69-251, gnl|Hg17|chr11 (1739311-1739116) | |
| 69-251, gnl|loxAfr1|scaffold_106386 (8655-8845) | |
| 69-251, gnl|mm7|chr7 (138812734-138812902) | |
| 69-251, gnl|Mm7|chr7 (138812922-138812740) | |
| 69-251, gnl|monDom2|scaffold_70 (7406895-7407083) | |
| 69-251, gnl|oryCun1|scaffold_206109 (13939-14098) | |
| 69-251, gnl|panTro1|chr9_random (10692369-10692537) | |
| 69-251, gnl|rheMac2|chr14 (1673372-1673540) | |
| 69-251, gnl|rn3|chr1 (202788795-202788963) | |
| 69-251, gnl|tetNig1|chrUn_random (97880669-97880833) | |
| 69-251, gnl|xenTro1|scaffold_389 (474967-475129) | |
| 253-377, gnl|bosTau2|chr29 (43988427-43988303) | |
| 253-377, gnl|Hg17|chr11 (1737445-1737321) | |
| 253-377, gnl|Mm7|chr7 (138810821-138810697) | |
| 256-374, gnl|bosTau2|chr23 (16395541-16395659) | |
| 256-374, gnl|canFam2|chr38 (3750539-3750692) | |
| 256-374, gnl|danRer3|chr8 (33606032-33605892) | |
| 256-374, gnl|dasNov1|scaffold_80246 (1036-1172) | |
| 256-374, gnl|echTel1|scaffold_298471 (27964-28109) | |
| 256-374, gnl|fr1|chrUn (81131869-81131727) | |
| 256-374, gnl|galGal2|chrUn (28431086-28430940) | |
| 256-374, gnl|hg17|chr1 (200862073-200862219) | |
| 256-374, gnl|Hg17|chr1 (200862197-200862079) | |
| 256-374, gnl|loxAfr1|scaffold_17879 (10580-10710) | |
| 256-374, gnl|mm7|chr1 (133255851-133255708) | |
| 256-374, gnl|Mm7|chr1_random (7565119-7565237) | |
| 256-374, gnl|monDom2|scaffold_13 (4721311-4721457) | |
| 256-374, gnl|oryCun1|scaffold_210069 (78539-78399) | |
| 256-374, gnl|panTro1|chr1 (183802370-183802516) | |
| 256-374, gnl|rheMac2|chr1 (166270670-166270524) | |
| 256-374, gnl|rn3|chr13 (46283598-46283453) | |
| 256-374, gnl|tetNig1|chr9 (6394411-6394556) | |
| 256-374, gnl|xenTro1|scaffold_704 (229916-229780) | |
| 495-723, gnl|bosTau2|chr29 (43987172-43986944) | |
| 495-723, gnl|Hg17|chr11 (1735363-1735129) | |
| 495-723, gnl|Mm7|chr7 (138808273-138808045) | |
| 844-990, gnl|bosTau2|chr29 (43984905-43984758) | |
| 844-990, gnl|canFam2|chr18 (49038280-49038450) | |
| 844-990, gnl|danRer3|chr18 (16792881-16792733) | |
| 844-990, gnl|dasNov1|scaffold_156441 (3993-3819) | |
| 844-990, gnl|echTel1|scaffold_298158 (1354-1522) | |
| 844-990, gnl|fr1|chrUn (23925168-23925320) | |
| 844-990, gnl|hg17|chr11 (1731796-1731968) | |
| 844-990, gnl|Hg17|chr11 (1731947-1731800) | |
| 844-990, gnl|loxAfr1|scaffold_11302 (46163-46323) | |
| 844-990, gnl|mm7|chr7 (138804302-138804459) | |
| 844-990, gnl|Mm7|chr7 (138804453-138804306) | |
| 844-990, gnl|monDom2|scaffold_308 (77291-77135) | |
| 844-990, gnl|oryCun1|scaffold_210069 (15379-15218) | |
| 844-990, gnl|panTro1|chr9 (1870438-1870610) | |
| 844-990, gnl|rheMac2|chr14 (1666288-1666460) | |
| 844-990, gnl|rn3|chr1 (202780483-202780652) | |
| 844-990, gnl|tetNig1|chrUn_random (97878331-97878483) | |
| 844-990, gnl|xenTro1|scaffold_389 (467983-468141) | |
| 1088-1509, gnl|bosTau2|chr29 (43984493-43984063) | |
| 1088-1509, gnl|Hg17|chr11 (1731478-1731034) | |
| 1088-1509, gnl|Mm7|chr7 (138804020-138803598) | |
| 1631-1944, gnl|bosTau2|chr29 (43983990-43983672) | |
| 1631-1944, gnl|canFam2|chr18 (49037046-49037400) | |
| 1631-1944, gnl|echTel1|scaffold_298158 (398-642) | |
| 1631-1944, gnl|hg17|chr11 (1730537-1730916) | |
| 1631-1944, gnl|Hg17|chr11 (1730940-1730573) | |
| 1631-1944, gnl|loxAfr1|scaffold_116920 (1011-1349) | |
| 1631-1944, gnl|mm7|chr7 (138803166-138803513) | |
| 1631-1944, gnl|Mm7|chr7 (138803512-138803199) | |
| 1631-1944, gnl|monDom2|scaffold_363 (15531-15209) | |
| 1631-1944, gnl|panTro1|chr9 (1869116-1869496) | |
| 1631-1944, gnl|rheMac2|chr14 (1664924-1665307) | |
| 1631-1944, gnl|rn3|chr1 (202779352-202779703) |
| Aligned organism(s): 76 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 69-251, gnl|bosTau2|chr29 (43990393-43990211) | |
| 69-251, gnl|canFam2|chr18 (49044414-49044582) | |
| 69-251, gnl|danRer3|chr18 (16785666-16785501) | |
| 69-251, gnl|dasNov1|scaffold_171393 (412-580) | |
| 69-251, gnl|echTel1|scaffold_119788 (252-81) | |
| 69-251, gnl|fr1|chrUn (23927225-23927388) | |
| 69-251, gnl|hg17|chr11 (1739110-1739278) | |
| 69-251, gnl|Hg17|chr11 (1739311-1739116) | |
| 69-251, gnl|loxAfr1|scaffold_106386 (8655-8845) | |
| 69-251, gnl|mm7|chr7 (138812734-138812902) | |
| 69-251, gnl|Mm7|chr7 (138812922-138812740) | |
| 69-251, gnl|monDom2|scaffold_70 (7406895-7407083) | |
| 69-251, gnl|oryCun1|scaffold_206109 (13939-14098) | |
| 69-251, gnl|panTro1|chr9_random (10692369-10692537) | |
| 69-251, gnl|rheMac2|chr14 (1673372-1673540) | |
| 69-251, gnl|rn3|chr1 (202788795-202788963) | |
| 69-251, gnl|tetNig1|chrUn_random (97880669-97880833) | |
| 69-251, gnl|xenTro1|scaffold_389 (474967-475129) | |
| 253-377, gnl|bosTau2|chr29 (43988427-43988303) | |
| 253-377, gnl|Hg17|chr11 (1737445-1737321) | |
| 253-377, gnl|Mm7|chr7 (138810821-138810697) | |
| 256-374, gnl|bosTau2|chr23 (16395541-16395659) | |
| 256-374, gnl|canFam2|chr38 (3750539-3750692) | |
| 256-374, gnl|danRer3|chr8 (33606032-33605892) | |
| 256-374, gnl|dasNov1|scaffold_80246 (1036-1172) | |
| 256-374, gnl|echTel1|scaffold_298471 (27964-28109) | |
| 256-374, gnl|fr1|chrUn (81131869-81131727) | |
| 256-374, gnl|galGal2|chrUn (28431086-28430940) | |
| 256-374, gnl|hg17|chr1 (200862073-200862219) | |
| 256-374, gnl|Hg17|chr1 (200862197-200862079) | |
| 256-374, gnl|loxAfr1|scaffold_17879 (10580-10710) | |
| 256-374, gnl|mm7|chr1 (133255851-133255708) | |
| 256-374, gnl|Mm7|chr1_random (7565119-7565237) | |
| 256-374, gnl|monDom2|scaffold_13 (4721311-4721457) | |
| 256-374, gnl|oryCun1|scaffold_210069 (78539-78399) | |
| 256-374, gnl|panTro1|chr1 (183802370-183802516) | |
| 256-374, gnl|rheMac2|chr1 (166270670-166270524) | |
| 256-374, gnl|rn3|chr13 (46283598-46283453) | |
| 256-374, gnl|tetNig1|chr9 (6394411-6394556) | |
| 256-374, gnl|xenTro1|scaffold_704 (229916-229780) | |
| 495-723, gnl|bosTau2|chr29 (43987172-43986944) | |
| 495-723, gnl|Hg17|chr11 (1735363-1735129) | |
| 495-723, gnl|Mm7|chr7 (138808273-138808045) | |
| 844-990, gnl|bosTau2|chr29 (43984905-43984758) | |
| 844-990, gnl|canFam2|chr18 (49038280-49038450) | |
| 844-990, gnl|danRer3|chr18 (16792881-16792733) | |
| 844-990, gnl|dasNov1|scaffold_156441 (3993-3819) | |
| 844-990, gnl|echTel1|scaffold_298158 (1354-1522) | |
| 844-990, gnl|fr1|chrUn (23925168-23925320) | |
| 844-990, gnl|hg17|chr11 (1731796-1731968) | |
| 844-990, gnl|Hg17|chr11 (1731947-1731800) | |
| 844-990, gnl|loxAfr1|scaffold_11302 (46163-46323) | |
| 844-990, gnl|mm7|chr7 (138804302-138804459) | |
| 844-990, gnl|Mm7|chr7 (138804453-138804306) | |
| 844-990, gnl|monDom2|scaffold_308 (77291-77135) | |
| 844-990, gnl|oryCun1|scaffold_210069 (15379-15218) | |
| 844-990, gnl|panTro1|chr9 (1870438-1870610) | |
| 844-990, gnl|rheMac2|chr14 (1666288-1666460) | |
| 844-990, gnl|rn3|chr1 (202780483-202780652) | |
| 844-990, gnl|tetNig1|chrUn_random (97878331-97878483) | |
| 844-990, gnl|xenTro1|scaffold_389 (467983-468141) | |
| 1088-1509, gnl|bosTau2|chr29 (43984493-43984063) | |
| 1088-1509, gnl|Hg17|chr11 (1731478-1731034) | |
| 1088-1509, gnl|Mm7|chr7 (138804020-138803598) | |
| 1631-1944, gnl|bosTau2|chr29 (43983990-43983672) | |
| 1631-1944, gnl|canFam2|chr18 (49037046-49037400) | |
| 1631-1944, gnl|echTel1|scaffold_298158 (398-642) | |
| 1631-1944, gnl|hg17|chr11 (1730537-1730916) | |
| 1631-1944, gnl|Hg17|chr11 (1730940-1730573) | |
| 1631-1944, gnl|loxAfr1|scaffold_116920 (1011-1349) | |
| 1631-1944, gnl|mm7|chr7 (138803166-138803513) | |
| 1631-1944, gnl|Mm7|chr7 (138803512-138803199) | |
| 1631-1944, gnl|monDom2|scaffold_363 (15531-15209) | |
| 1631-1944, gnl|panTro1|chr9 (1869116-1869496) | |
| 1631-1944, gnl|rheMac2|chr14 (1664924-1665307) | |
| 1631-1944, gnl|rn3|chr1 (202779352-202779703) |
| Expressed library(ies): 33 entry(ies) | More info |
| Expressed library(ies): 33 entry(ies) | Help | Less info |
| clu (1.91433) | |
| cov (1.85014) | |
| ute (1.32784) | |
| ill (1.05356) | |
| cly (0.965135) | |
| cty (0.832639) | |
| csp (0.805932) | |
| cag (0.755972) | |
| jca (0.683761) | |
| pla (0.66836) | |
| cga (0.558191) | |
| nje (0.49776) | |
| jej (0.494609) | |
| med (0.465008) | |
| ecc (0.46014) | |
| hyp (0.42851) | |
| lnt (0.426925) | |
| fli (0.405762) | |
| nmm (0.398406) | |
| fcc (0.39557) | |
| nep (0.36785) | |
| ebs (0.354904) | |
| ese (0.253004) | |
| ece (0.229305) | |
| mas (0.210305) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| cli (0.152812) | |
| pty (0.142714) | |
| eru (0.120048) | |
| eje (0.0988338) |
| Expressed library(ies): 33 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (1.91433) | |
| cov (1.85014) | |
| ute (1.32784) | |
| ill (1.05356) | |
| cly (0.965135) | |
| cty (0.832639) | |
| csp (0.805932) | |
| cag (0.755972) | |
| jca (0.683761) | |
| pla (0.66836) | |
| cga (0.558191) | |
| nje (0.49776) | |
| jej (0.494609) | |
| med (0.465008) | |
| ecc (0.46014) | |
| hyp (0.42851) | |
| lnt (0.426925) | |
| fli (0.405762) | |
| nmm (0.398406) | |
| fcc (0.39557) | |
| nep (0.36785) | |
| ebs (0.354904) | |
| ese (0.253004) | |
| ece (0.229305) | |
| mas (0.210305) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| cli (0.152812) | |
| pty (0.142714) | |
| eru (0.120048) | |
| eje (0.0988338) |