Non-Coding RNA Search

Ss1.1-Pig4-TMW8064A17.3

Sequence:


               
               TTTTTTTTTCTTTTTATGGCCATACTCGTGGCATATGGAAGCTCCTGGGTCAGGGATTGA
ATCCGAGCCATAGCTGTGACCTATGCCGCAGCTTTAACCCATTACACCAGGCCAGGGATT
GAACCCACACCTCTGCAGTGAACCAAACCACTGCAGTCAGATTCTTAACCCACTGTGCCA
CAGTGGGATCTCCTCAAGTGCATTTTAAAAAGAACTGTACTGTAAATGAAATGCTCGACT
TAGCAAAATTTGTGCTCTTTCATTTGCTATTAGAAAAAGAAAATTGGCAAGAACAGTTAA
AGAGTACAGTATACTATTCTTATTCTGTCTTTATAACTTTAATTACTGTAATATTTCTAA
TAATGTTGATTTACTATAATCTTATTCAAATTCTTATGTCTTAGAGCCTGACTGTCTTCA
TGTTTAAAACTCCTTATAGTAAAATCTTTAGTGTTTATTACCAACTCAACAAATGCTATT
CATAATAGCTCTTTTTCAAGTTGTAGCACATGCTTTTCTTTTTAATTATTATTATCTGAT
TATAAAACCTCTATAGAAATGAACTGTTTATATAAAATCTGTAACTCACACTTTTTATTA
TCACAGTTATTATAAGCTTTTAACAGTATGTCAATTATTAGGTTGTATAACACTTTCACC
TCAATGCTAAGGAATATTTTCAAGATGTCCCTTTGTAGGATCTTGGTTGGAAGAGACTGG
ATACTATCAATTCTACACCAAACTGTCTTCTTAGGTACGCACAGACTGGATAACTCTGAA
AAACACATCTGCCTAATTAAATAGGCACAGCATTGAACAGAACACACAGAAACTAAAAGC
TCTGTGTAAAAAGAGTTCTTATATATTTTTTGTTGTTGTTCAACATGAGTAAAGCTAGAA
AATAAGGAAAACATTAAAATATTGGTTTGAAATAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTCTTTTTATGGCCATACTCGTGGCATATGGAAGCTCCTGGGTCAGGGATTGA
ATCCGAGCCATAGCTGTGACCTATGCCGCAGCTTTAACCCATTACACCAGGCCAGGGATT
GAACCCACACCTCTGCAGTGAACCAAACCACTGCAGTCAGATTCTTAACCCACTGTGCCA
CAGTGGGATCTCCTCAAGTGCATTTTAAAAAGAACTGTACTGTAAATGAAATGCTCGACT
TAGCAAAATTTGTGCTCTTTCATTTGCTATTAGAAAAAGAAAATTGGCAAGAACAGTTAA
AGAGTACAGTATACTATTCTTATTCTGTCTTTATAACTTTAATTACTGTAATATTTCTAA
TAATGTTGATTTACTATAATCTTATTCAAATTCTTATGTCTTAGAGCCTGACTGTCTTCA
TGTTTAAAACTCCTTATAGTAAAATCTTTAGTGTTTATTACCAACTCAACAAATGCTATT
CATAATAGCTCTTTTTCAAGTTGTAGCACATGCTTTTCTTTTTAATTATTATTATCTGAT
TATAAAACCTCTATAGAAATGAACTGTTTATATAAAATCTGTAACTCACACTTTTTATTA
TCACAGTTATTATAAGCTTTTAACAGTATGTCAATTATTAGGTTGTATAACACTTTCACC
TCAATGCTAAGGAATATTTTCAAGATGTCCCTTTGTAGGATCTTGGTTGGAAGAGACTGG
ATACTATCAATTCTACACCAAACTGTCTTCTTAGGTACGCACAGACTGGATAACTCTGAA
AAACACATCTGCCTAATTAAATAGGCACAGCATTGAACAGAACACACAGAAACTAAAAGC
TCTGTGTAAAAAGAGTTCTTATATATTTTTTGTTGTTGTTCAACATGAGTAAAGCTAGAA
AATAAGGAAAACATTAAAATATTGGTTTGAAATAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               194-937, gnl|bosTau2|chr7 (51786074-51785313)
               

               
               194-937, gnl|Hg17|chr9 (92298810-92298042)
               

               
               194-937, gnl|Mm7|chr13 (49050779-49051441)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               194-937, gnl|bosTau2|chr7 (51786074-51785313)
               

               
               194-937, gnl|Hg17|chr9 (92298810-92298042)
               

               
               194-937, gnl|Mm7|chr13 (49050779-49051441)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

Help | Less info


               
               aor (0.585823)
               

               
               csk (0.422238)
               

               
               eye (0.341006)
               

               
               fat (0.294855)
               

               
               ret (0.257467)
               

               
               eru (0.240096)
               

               
               jca (0.22792)
               

               
               nms (0.213858)
               

               
               mgm (0.180343)
               

               
               fty (0.17584)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               kid (0.129735)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.585823)
               

               
               csk (0.422238)
               

               
               eye (0.341006)
               

               
               fat (0.294855)
               

               
               ret (0.257467)
               

               
               eru (0.240096)
               

               
               jca (0.22792)
               

               
               nms (0.213858)
               

               
               mgm (0.180343)
               

               
               fty (0.17584)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               kid (0.129735)

	194-937, gnl\|bosTau2\|chr7 (51786074-51785313)
	194-937, gnl\|Hg17\|chr9 (92298810-92298042)
	194-937, gnl\|Mm7\|chr13 (49050779-49051441)

	aor (0.585823)
	csk (0.422238)
	eye (0.341006)
	fat (0.294855)
	ret (0.257467)
	eru (0.240096)
	jca (0.22792)
	nms (0.213858)
	mgm (0.180343)
	fty (0.17584)
	mga (0.160205)
	isp (0.150376)
	ski (0.146735)
	nca (0.136874)
	ste (0.135208)
	kid (0.129735)