Ss1.1-Pig4-TMW8064A24.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGCCCCCGGGGCCGGCGGCGGCGCTGGAGCTGTGGCTCAATAAAGCCACAGACCCAAGC ATGTCGGAACAGGATTGGTCAGCTATCCAGAACTTCTGTGACCAAGTGAACACCGACCCT AATGGCCCAACCCACACGCCCTGGCTGCTGGCCCACAAGATCCAGTCTCCACAAGAGAAA GAAGCTCTTTATGCCTTAACGGTCCTGGAGATGTGTGTGAACCACTGTGGGGAGAAGTTC CACAGCGAGGTGGCCAAATTCCGCTTCCTGAATGAGCTCATCAAAGTGTTGTCCCCGAAG TACCTGGGCTCCTGGACCACAGAAAAAGTTAAAGGAAGAATCATTGAAATACTCTACAGT TGGACCGTCTGGTTTCCCGAAGACATCAAGATCCGGGATGCTTATCAGATGCTGAAGAAG CAAGGAATCATAAAGCAAGACCCTAAACTACCAGTGGATAAGATCTTGCCCCCACCTTCT CCCTGGCCCAAGAGTTCCATCTTTGATGCTGACGAAGAAAAGTCCAAGCTTCTGACAAGG CTTCTGAAAAGCAACCACCCTGAGGATCTTCAGGCTGCAAACCGGCTGATCAAGAATTTG GTCAAGGAGGAACAGGAGAAATCAGAAAAGGTGTCCAAGAGGGTGAGCGCCGTGGAGGAA GTACGGAGCCACGTGAAGGTGCTGCAGGAAATGCTGAGCAGGTACCGCAGGCCAGGCCAG GCCCCGCCCGACCAGGAGGCCTTGCAGGTCGTGTATGAGAGGTGTGAAAAGCTTCGGCCC ACCCTGTTCCGGCTGGCAAGTGACACCACCGACGATGACGACGCACTCGCGGAGATTCTC CAGGCAAATGACCTCCTCACCCAGGGAGTCCTGCTGTACAAACAGGTGGTAGAGGGCCGT GTCACCTTTGGGAGCACCGCGGTCAGCTCTGTGGAAGACACACCTGTCTCCAGAGGCTGC ACGAAGAACTGTCCCCTGATTGACCTGGAGGGGGACAGTGGGTCTGCCCAGGCTGGGGTC GCCACACCGTCTTTACTGCACCAGGACCTGGCAGCCTTAGGAATCAGTGATGCCCCAGTA ACCAACAAGGCTGCCGGGCAGCACTGCTGTCAGGAAGAGAAGACCCCCACCGCCAGCACA CCGCCAGGTGGTGCTGTTCGGAGCCCTTCTGCAGAAAGGAACCTGCTGGATCTACTCTCC CCACAGGCGTCTCCAGGCCCTCTGAATTATATTCCACAAAAAAGTATC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGCCCCCGGGGCCGGCGGCGGCGCTGGAGCTGTGGCTCAATAAAGCCACAGACCCAAGC ATGTCGGAACAGGATTGGTCAGCTATCCAGAACTTCTGTGACCAAGTGAACACCGACCCT AATGGCCCAACCCACACGCCCTGGCTGCTGGCCCACAAGATCCAGTCTCCACAAGAGAAA GAAGCTCTTTATGCCTTAACGGTCCTGGAGATGTGTGTGAACCACTGTGGGGAGAAGTTC CACAGCGAGGTGGCCAAATTCCGCTTCCTGAATGAGCTCATCAAAGTGTTGTCCCCGAAG TACCTGGGCTCCTGGACCACAGAAAAAGTTAAAGGAAGAATCATTGAAATACTCTACAGT TGGACCGTCTGGTTTCCCGAAGACATCAAGATCCGGGATGCTTATCAGATGCTGAAGAAG CAAGGAATCATAAAGCAAGACCCTAAACTACCAGTGGATAAGATCTTGCCCCCACCTTCT CCCTGGCCCAAGAGTTCCATCTTTGATGCTGACGAAGAAAAGTCCAAGCTTCTGACAAGG CTTCTGAAAAGCAACCACCCTGAGGATCTTCAGGCTGCAAACCGGCTGATCAAGAATTTG GTCAAGGAGGAACAGGAGAAATCAGAAAAGGTGTCCAAGAGGGTGAGCGCCGTGGAGGAA GTACGGAGCCACGTGAAGGTGCTGCAGGAAATGCTGAGCAGGTACCGCAGGCCAGGCCAG GCCCCGCCCGACCAGGAGGCCTTGCAGGTCGTGTATGAGAGGTGTGAAAAGCTTCGGCCC ACCCTGTTCCGGCTGGCAAGTGACACCACCGACGATGACGACGCACTCGCGGAGATTCTC CAGGCAAATGACCTCCTCACCCAGGGAGTCCTGCTGTACAAACAGGTGGTAGAGGGCCGT GTCACCTTTGGGAGCACCGCGGTCAGCTCTGTGGAAGACACACCTGTCTCCAGAGGCTGC ACGAAGAACTGTCCCCTGATTGACCTGGAGGGGGACAGTGGGTCTGCCCAGGCTGGGGTC GCCACACCGTCTTTACTGCACCAGGACCTGGCAGCCTTAGGAATCAGTGATGCCCCAGTA ACCAACAAGGCTGCCGGGCAGCACTGCTGTCAGGAAGAGAAGACCCCCACCGCCAGCACA CCGCCAGGTGGTGCTGTTCGGAGCCCTTCTGCAGAAAGGAACCTGCTGGATCTACTCTCC CCACAGGCGTCTCCAGGCCCTCTGAATTATATTCCACAAAAAAGTATC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 839-1207, + strand, RNAz p=0.727716 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 839-1207, + strand, RNAz p=0.727716 |
| Aligned organism(s): 49 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
| 299-425, gnl|bosTau2|chr25 (19452260-19452134) | |
| 299-425, gnl|canFam2|chr6 (25345061-25344913) | |
| 299-425, gnl|danRer3|chrUn (20992747-20992907) | |
| 299-425, gnl|dasNov1|scaffold_85184 (4788-4943) | |
| 299-425, gnl|echTel1|scaffold_199346 (2799-2647) | |
| 299-425, gnl|fr1|chrUn (137435887-137435750) | |
| 299-425, gnl|hg17|chr16 (23410486-23410643) | |
| 299-425, gnl|Hg17|chr16 (23410624-23410498) | |
| 299-425, gnl|loxAfr1|scaffold_61188 (2750-2597) | |
| 299-425, gnl|mm7|chr7 (117931516-117931661) | |
| 299-425, gnl|Mm7|chr7 (117931647-117931521) | |
| 299-425, gnl|monDom2|scaffold_17 (43585813-43585657) | |
| 299-425, gnl|oryCun1|scaffold_173701 (102901-102753) | |
| 299-425, gnl|rheMac2|chr20 (21990217-21990374) | |
| 299-425, gnl|rn3|chr1 (180975151-180975296) | |
| 299-425, gnl|tetNig1|chr18 (8986057-8985926) | |
| 608-749, gnl|bosTau2|chr25 (19448425-19448284) | |
| 608-749, gnl|canFam2|chr6 (25349623-25349481) | |
| 608-749, gnl|dasNov1|scaffold_85184 (1177-1319) | |
| 608-749, gnl|echTel1|scaffold_199346 (7661-7519) | |
| 608-749, gnl|fr1|chrUn (167953724-167953857) | |
| 608-749, gnl|galGal2|chr14 (8957817-8957675) | |
| 608-749, gnl|hg17|chr16 (23404835-23404977) | |
| 608-749, gnl|Hg17|chr16 (23404976-23404835) | |
| 608-749, gnl|loxAfr1|scaffold_61188 (7044-6902) | |
| 608-749, gnl|mm7|chr7 (117926338-117926480) | |
| 608-749, gnl|Mm7|chr7 (117926479-117926338) | |
| 608-749, gnl|monDom2|scaffold_17 (43588959-43588817) | |
| 608-749, gnl|oryCun1|scaffold_173701 (106460-106318) | |
| 608-749, gnl|panTro1|chr18 (24022001-24022143) | |
| 608-749, gnl|rheMac2|chr20 (21983847-21983989) | |
| 608-749, gnl|rn3|chr1 (180969811-180969953) | |
| 608-749, gnl|tetNig1|chrUn_random (100782307-100782161) | |
| 829-956, gnl|bosTau2|chr25 (19445433-19445306) | |
| 829-956, gnl|Hg17|chr16 (23399593-23399466) | |
| 829-956, gnl|Mm7|chr7 (117923249-117923122) | |
| 1088-1224, gnl|bosTau2|chr25 (19443908-19443772) | |
| 1088-1224, gnl|canFam2|chr6 (25357774-25357578) | |
| 1088-1224, gnl|echTel1|scaffold_291305 (23386-23559) | |
| 1088-1224, gnl|hg17|chr16 (23397140-23397338) | |
| 1088-1224, gnl|Hg17|chr16 (23397325-23397189) | |
| 1088-1224, gnl|loxAfr1|scaffold_6539 (325-129) | |
| 1088-1224, gnl|mm7|chr7 (117921521-117921701) | |
| 1088-1224, gnl|Mm7|chr7 (117921688-117921555) | |
| 1088-1224, gnl|monDom2|scaffold_17 (43596640-43596394) | |
| 1088-1224, gnl|oryCun1|scaffold_173701 (114606-114421) | |
| 1088-1224, gnl|panTro1|chr18 (24014274-24014477) | |
| 1088-1224, gnl|rheMac2|chr20 (21976271-21976469) | |
| 1088-1224, gnl|rn3|chr1 (180963825-180963983) |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 299-425, gnl|bosTau2|chr25 (19452260-19452134) | |
| 299-425, gnl|canFam2|chr6 (25345061-25344913) | |
| 299-425, gnl|danRer3|chrUn (20992747-20992907) | |
| 299-425, gnl|dasNov1|scaffold_85184 (4788-4943) | |
| 299-425, gnl|echTel1|scaffold_199346 (2799-2647) | |
| 299-425, gnl|fr1|chrUn (137435887-137435750) | |
| 299-425, gnl|hg17|chr16 (23410486-23410643) | |
| 299-425, gnl|Hg17|chr16 (23410624-23410498) | |
| 299-425, gnl|loxAfr1|scaffold_61188 (2750-2597) | |
| 299-425, gnl|mm7|chr7 (117931516-117931661) | |
| 299-425, gnl|Mm7|chr7 (117931647-117931521) | |
| 299-425, gnl|monDom2|scaffold_17 (43585813-43585657) | |
| 299-425, gnl|oryCun1|scaffold_173701 (102901-102753) | |
| 299-425, gnl|rheMac2|chr20 (21990217-21990374) | |
| 299-425, gnl|rn3|chr1 (180975151-180975296) | |
| 299-425, gnl|tetNig1|chr18 (8986057-8985926) | |
| 608-749, gnl|bosTau2|chr25 (19448425-19448284) | |
| 608-749, gnl|canFam2|chr6 (25349623-25349481) | |
| 608-749, gnl|dasNov1|scaffold_85184 (1177-1319) | |
| 608-749, gnl|echTel1|scaffold_199346 (7661-7519) | |
| 608-749, gnl|fr1|chrUn (167953724-167953857) | |
| 608-749, gnl|galGal2|chr14 (8957817-8957675) | |
| 608-749, gnl|hg17|chr16 (23404835-23404977) | |
| 608-749, gnl|Hg17|chr16 (23404976-23404835) | |
| 608-749, gnl|loxAfr1|scaffold_61188 (7044-6902) | |
| 608-749, gnl|mm7|chr7 (117926338-117926480) | |
| 608-749, gnl|Mm7|chr7 (117926479-117926338) | |
| 608-749, gnl|monDom2|scaffold_17 (43588959-43588817) | |
| 608-749, gnl|oryCun1|scaffold_173701 (106460-106318) | |
| 608-749, gnl|panTro1|chr18 (24022001-24022143) | |
| 608-749, gnl|rheMac2|chr20 (21983847-21983989) | |
| 608-749, gnl|rn3|chr1 (180969811-180969953) | |
| 608-749, gnl|tetNig1|chrUn_random (100782307-100782161) | |
| 829-956, gnl|bosTau2|chr25 (19445433-19445306) | |
| 829-956, gnl|Hg17|chr16 (23399593-23399466) | |
| 829-956, gnl|Mm7|chr7 (117923249-117923122) | |
| 1088-1224, gnl|bosTau2|chr25 (19443908-19443772) | |
| 1088-1224, gnl|canFam2|chr6 (25357774-25357578) | |
| 1088-1224, gnl|echTel1|scaffold_291305 (23386-23559) | |
| 1088-1224, gnl|hg17|chr16 (23397140-23397338) | |
| 1088-1224, gnl|Hg17|chr16 (23397325-23397189) | |
| 1088-1224, gnl|loxAfr1|scaffold_6539 (325-129) | |
| 1088-1224, gnl|mm7|chr7 (117921521-117921701) | |
| 1088-1224, gnl|Mm7|chr7 (117921688-117921555) | |
| 1088-1224, gnl|monDom2|scaffold_17 (43596640-43596394) | |
| 1088-1224, gnl|oryCun1|scaffold_173701 (114606-114421) | |
| 1088-1224, gnl|panTro1|chr18 (24014274-24014477) | |
| 1088-1224, gnl|rheMac2|chr20 (21976271-21976469) | |
| 1088-1224, gnl|rn3|chr1 (180963825-180963983) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cag (0.151194) | |
| eep (0.122564) | |
| jca (0.11396) |