Non-Coding RNA Search

Ss1.1-Pig4-TMW8064B05.3

Sequence:


               
               CCGTAAGAGCTAATTCAGGAGGAACTTGAGATGGGTCCTTTCTCACACCCAGCGTCACCA
CCTGCCCCGTTCTCCATGCCGAGCCCTTCCCCGAAGCCCTGTCTCTCTGAACGTGCTCAG
TGTCCTTGCACACACTAGCGTGGGTTTGAGGACATAAACATTTGTGTGATAACTTGGTCC
TGACAGGCTGTAGTCGACATGGGATGTAAAACAAAGTGACCGTGAGCTGTGTCAAAAAGG
GATCATGCTGTTATATGTGAAATTTGCTGGTAGTGAATGTCACTTATGTTCTCATAGATA
ATCAAGAGTTGGCTGTACAATGAGTGAGTGAAAGATGGGTAATTCTTTGAAATATGCATA
TACACACACATAGGTATTGGATGATGGTTAAGGAACAGTGGAAACCAGTGATAGAAAACA
GTATCTTTTAAAAGGGCAGCAAAAGCCCCCTTTTCCTTATTGCCTCTTCATAACCCTTTA
GAAGGAAAGTATAAAGTATTGCCTCCAACATGCTGAAAAAGAATATCTATGCATCAACAT
CAGAGAAGTCCCTCAAGCAATCAGTGGACATGTTCTATATTTAGATTTTGAAGTTCTCTT
AGCATCAGACAACTTGTTTCGTAAGGCCACTAATTTGCCACCAATAAAAAAGCACACTGG
TAGGGACCTCCTCTCTCTCTTATCTCTTTTTGACTAAGTGCTCAGCATCACAGCTGACTA
GATGACCTAGTGTGAAGACATTAATGTAGCAGACCATTCGCAGCAGTTATGGCCGCTCAG
ATTTTTGCAGCAGAGGAGTAAGCTAAAAGGGTCTGGTCCACATACATGTGTGAATGGCCC
GCTCCTGATTTTTCAATATGAAGCAAGTGTCTGGCACTAAGGGAAGGGGAGAGCAGGATG
ATAGAAAGTTTGAGCTGATGGAGAGGGACTTGTTTAAGGGAAACTTGTCTTTTTTTCCTT
TGAAAAAGGAAAATTAAAATCCCTTAAGAATTTGATATTCACATCTCAGAGAAATACAAC
ACAAAGTGCAGACTTATATTTGAGAATTAATGTTAACCCTTTGTGTCTAGTTTGAAGCTT
CTTGTATTTGTCTAAAACTACAAGCCAGAATTTTGTATCTCCTTTGATAAAAAGTGTGTA
TAATGTAAAGTAGTTTTGCATATTCTTGTGCTGCACATGGGCTGAATTTTTAAAAATTTT
TTAAAGACTTGAAGCAGAACCTTGTAATTTGTGTAAATGACAAGTGTAAAATCCTACCAT
AAAAATGCTAAAAATATGCATTGTTTCAAATAAAATCAAGAAATGCAGCATTAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGTAAGAGCTAATTCAGGAGGAACTTGAGATGGGTCCTTTCTCACACCCAGCGTCACCA
CCTGCCCCGTTCTCCATGCCGAGCCCTTCCCCGAAGCCCTGTCTCTCTGAACGTGCTCAG
TGTCCTTGCACACACTAGCGTGGGTTTGAGGACATAAACATTTGTGTGATAACTTGGTCC
TGACAGGCTGTAGTCGACATGGGATGTAAAACAAAGTGACCGTGAGCTGTGTCAAAAAGG
GATCATGCTGTTATATGTGAAATTTGCTGGTAGTGAATGTCACTTATGTTCTCATAGATA
ATCAAGAGTTGGCTGTACAATGAGTGAGTGAAAGATGGGTAATTCTTTGAAATATGCATA
TACACACACATAGGTATTGGATGATGGTTAAGGAACAGTGGAAACCAGTGATAGAAAACA
GTATCTTTTAAAAGGGCAGCAAAAGCCCCCTTTTCCTTATTGCCTCTTCATAACCCTTTA
GAAGGAAAGTATAAAGTATTGCCTCCAACATGCTGAAAAAGAATATCTATGCATCAACAT
CAGAGAAGTCCCTCAAGCAATCAGTGGACATGTTCTATATTTAGATTTTGAAGTTCTCTT
AGCATCAGACAACTTGTTTCGTAAGGCCACTAATTTGCCACCAATAAAAAAGCACACTGG
TAGGGACCTCCTCTCTCTCTTATCTCTTTTTGACTAAGTGCTCAGCATCACAGCTGACTA
GATGACCTAGTGTGAAGACATTAATGTAGCAGACCATTCGCAGCAGTTATGGCCGCTCAG
ATTTTTGCAGCAGAGGAGTAAGCTAAAAGGGTCTGGTCCACATACATGTGTGAATGGCCC
GCTCCTGATTTTTCAATATGAAGCAAGTGTCTGGCACTAAGGGAAGGGGAGAGCAGGATG
ATAGAAAGTTTGAGCTGATGGAGAGGGACTTGTTTAAGGGAAACTTGTCTTTTTTTCCTT
TGAAAAAGGAAAATTAAAATCCCTTAAGAATTTGATATTCACATCTCAGAGAAATACAAC
ACAAAGTGCAGACTTATATTTGAGAATTAATGTTAACCCTTTGTGTCTAGTTTGAAGCTT
CTTGTATTTGTCTAAAACTACAAGCCAGAATTTTGTATCTCCTTTGATAAAAAGTGTGTA
TAATGTAAAGTAGTTTTGCATATTCTTGTGCTGCACATGGGCTGAATTTTTAAAAATTTT
TTAAAGACTTGAAGCAGAACCTTGTAATTTGTGTAAATGACAAGTGTAAAATCCTACCAT
AAAAATGCTAAAAATATGCATTGTTTCAAATAAAATCAAGAAATGCAGCATTAAAAAAAA
AAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1313, gnl|bosTau2|chrX (41532612-41531342)
               

               
               1-1313, gnl|Hg17|chr4 (39648341-39647049)
               

               
               1-1313, gnl|Mm7|chr5 (64963702-64962588)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1313, gnl|bosTau2|chrX (41532612-41531342)
               

               
               1-1313, gnl|Hg17|chr4 (39648341-39647049)
               

               
               1-1313, gnl|Mm7|chr5 (64963702-64962588)

Expressed library(ies): 17 entry(ies)

More info

Expressed library(ies): 17 entry(ies)

Help | Less info


               
               lin (0.291206)
               

               
               clu (0.239292)
               

               
               spc (0.226732)
               

               
               cmu (0.186393)
               

               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.291206)
               

               
               clu (0.239292)
               

               
               spc (0.226732)
               

               
               cmu (0.186393)
               

               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	1-1313, gnl\|bosTau2\|chrX (41532612-41531342)
	1-1313, gnl\|Hg17\|chr4 (39648341-39647049)
	1-1313, gnl\|Mm7\|chr5 (64963702-64962588)

	lin (0.291206)
	clu (0.239292)
	spc (0.226732)
	cmu (0.186393)
	mga (0.160205)
	ski (0.146735)
	liv (0.146284)
	spl (0.143184)
	lyg (0.133103)
	nmm (0.132802)
	kid (0.129735)
	ret (0.128733)
	thg (0.126791)
	ecc (0.115035)
	jca (0.11396)
	cty (0.10408)
	eje (0.0988338)