Non-Coding RNA Search

Ss1.1-Pig4-TMW8064B13.3

Sequence:


               
               TGCTGACAGCTGCTTGGGACTCTGCCGCCAGGCCTTGGCCCAGACCCGCCGCCGCCACCT
CCCCTCTCCTCTCGGGAACTCCTGAGCACGGCCCCTCCATGGCCCAGAAGGAAGAGGCCG
CTGCGGCCGAGGCACCTGCCTCCCAGAATGGTGAGGAGCTGGACAACCTGGAGGACCCCG
AGAAGCTGAAGGAGCTGATCGAGCTGCCGCCCTTTGAGATCGTCACGGGGGAGCGGCTGC
CTGTCAACTTCTTTAAGTTTCAGTTCCGGAATGTGGAGTACAGCTCCGGGCGGAACAAGA
CCTTCCTCTGCTACGTGATCGAAGCGCAGAGCAAGGGAGGCCAAGTGCAGGCGACGCGGG
GGTACCTGGAGGATGAGCACGCGGCCGCCCACGCGGAGGAAGCCTTCTTCAACACGATCC
TGCCCGCCTTAGACCCGGCCGTGCGCTACGTGGTCACCTGGTACGTGTCCTCCAGCCCCT
GCGCGGCCTGCGCGGACCGCATCATCAAAACCCTCAACAAGGCCAAGAACCTGCGCCTGC
TCATCCTGGTGGGGCGGCTCTTCATGTGGGAGGAGCCCGAGATCCAGGCGGCTCTGAGGA
GGCTGAAGGAAGCCGGCTGCAGGCTGCGCATCATGAAGCCCCAGGACTTCGAGTACGTCT
GGCAGAATTTTGTGGAGCAAGAGGAGGGCGAATCCAAGGCCTTTGAGCCCTGGGAGGACA
TTCAGGAGAACTTCCTGTACTACGAGGAGAAGTTGGCGGACATCCTCAAGTAGGCGGACT
GGGCCCAGCCTCACGTCGGCCTGCTGCCAAGAGACAGCAATGACACATGTGGCCATCTGG
GACGTGCCTGACTTCCCAATAGCACTTGGAGCTGGACAACATTCAACACCAACCAATCCT
ACTGCACAAGGCCCTCAGAGGACTCCAAATACACTTATGCTGTAAATCATTGACGCTGCG
CCTCTCTCTCTAAGGCTGCTCTTGGGAGCTGCGAGGAGAGAAATGGCAACCACACGCGGG
CACCAGGCATCCGTGGGGCTGAAGGTCCTCCTTATTCCCCTGACTGGGCTGCTTACGGCA
AAAAGCCTCAAAGATGTGCAAAGTCTGCACATCTTTGAAATATGTCCAGAAATGCATCCG
ATGTTAAGTTGGGATTTTTTTTTTTTTAAAGAAAAACAGCAACATTAATAAAAAAAGGTG
GTGTGGTCTTTCTGTGACCAGCTTTTTTAAGGAACTTGGACATTTAGAAATTACTTTGGA
CAGTGAGCAAGTCTTGGGAATAGGGCTGTCCCAGGCTATGAACCAAGCTTAAACAACACA
TAAAGGGGGAGGAAGACTTAAACCAGGACTTGCCTGGATAACACAGGATGTGCCAACTCC
CCCATCCACACTTCACACCTTGGTCTTGACCTTCATAAAATATTTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTGACAGCTGCTTGGGACTCTGCCGCCAGGCCTTGGCCCAGACCCGCCGCCGCCACCT
CCCCTCTCCTCTCGGGAACTCCTGAGCACGGCCCCTCCATGGCCCAGAAGGAAGAGGCCG
CTGCGGCCGAGGCACCTGCCTCCCAGAATGGTGAGGAGCTGGACAACCTGGAGGACCCCG
AGAAGCTGAAGGAGCTGATCGAGCTGCCGCCCTTTGAGATCGTCACGGGGGAGCGGCTGC
CTGTCAACTTCTTTAAGTTTCAGTTCCGGAATGTGGAGTACAGCTCCGGGCGGAACAAGA
CCTTCCTCTGCTACGTGATCGAAGCGCAGAGCAAGGGAGGCCAAGTGCAGGCGACGCGGG
GGTACCTGGAGGATGAGCACGCGGCCGCCCACGCGGAGGAAGCCTTCTTCAACACGATCC
TGCCCGCCTTAGACCCGGCCGTGCGCTACGTGGTCACCTGGTACGTGTCCTCCAGCCCCT
GCGCGGCCTGCGCGGACCGCATCATCAAAACCCTCAACAAGGCCAAGAACCTGCGCCTGC
TCATCCTGGTGGGGCGGCTCTTCATGTGGGAGGAGCCCGAGATCCAGGCGGCTCTGAGGA
GGCTGAAGGAAGCCGGCTGCAGGCTGCGCATCATGAAGCCCCAGGACTTCGAGTACGTCT
GGCAGAATTTTGTGGAGCAAGAGGAGGGCGAATCCAAGGCCTTTGAGCCCTGGGAGGACA
TTCAGGAGAACTTCCTGTACTACGAGGAGAAGTTGGCGGACATCCTCAAGTAGGCGGACT
GGGCCCAGCCTCACGTCGGCCTGCTGCCAAGAGACAGCAATGACACATGTGGCCATCTGG
GACGTGCCTGACTTCCCAATAGCACTTGGAGCTGGACAACATTCAACACCAACCAATCCT
ACTGCACAAGGCCCTCAGAGGACTCCAAATACACTTATGCTGTAAATCATTGACGCTGCG
CCTCTCTCTCTAAGGCTGCTCTTGGGAGCTGCGAGGAGAGAAATGGCAACCACACGCGGG
CACCAGGCATCCGTGGGGCTGAAGGTCCTCCTTATTCCCCTGACTGGGCTGCTTACGGCA
AAAAGCCTCAAAGATGTGCAAAGTCTGCACATCTTTGAAATATGTCCAGAAATGCATCCG
ATGTTAAGTTGGGATTTTTTTTTTTTTAAAGAAAAACAGCAACATTAATAAAAAAAGGTG
GTGTGGTCTTTCTGTGACCAGCTTTTTTAAGGAACTTGGACATTTAGAAATTACTTTGGA
CAGTGAGCAAGTCTTGGGAATAGGGCTGTCCCAGGCTATGAACCAAGCTTAAACAACACA
TAAAGGGGGAGGAAGACTTAAACCAGGACTTGCCTGGATAACACAGGATGTGCCAACTCC
CCCATCCACACTTCACACCTTGGTCTTGACCTTCATAAAATATTTTCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61837139|ref|XP_586622.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61837139|ref|XP_586622.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               268-387, - strand, RNAz p=0.737109
               

               
               628-787, + strand, RNAz p=0.793495

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               268-387, - strand, RNAz p=0.737109
               

               
               628-787, + strand, RNAz p=0.793495

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_006789, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_006789, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               229-803, gnl|bosTau2|chr23 (14345494-14344921)
               

               
               229-803, gnl|Hg17|chr6 (41137044-41137642)
               

               
               229-803, gnl|Mm7|chr17 (46569233-46568633)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               229-803, gnl|bosTau2|chr23 (14345494-14344921)
               

               
               229-803, gnl|Hg17|chr6 (41137044-41137642)
               

               
               229-803, gnl|Mm7|chr17 (46569233-46568633)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               nms (1.71086)
               

               
               mas (0.84122)
               

               
               ldo (0.582016)
               

               
               ssp (0.542079)
               

               
               ese (0.506009)
               

               
               sme (0.305437)
               

               
               hlv (0.278513)
               

               
               eru (0.240096)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               eye (0.170503)
               

               
               nca (0.136874)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (1.71086)
               

               
               mas (0.84122)
               

               
               ldo (0.582016)
               

               
               ssp (0.542079)
               

               
               ese (0.506009)
               

               
               sme (0.305437)
               

               
               hlv (0.278513)
               

               
               eru (0.240096)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               eye (0.170503)
               

               
               nca (0.136874)

	268-387, - strand, RNAz p=0.737109
	628-787, + strand, RNAz p=0.793495

	229-803, gnl\|bosTau2\|chr23 (14345494-14344921)
	229-803, gnl\|Hg17\|chr6 (41137044-41137642)
	229-803, gnl\|Mm7\|chr17 (46569233-46568633)

	nms (1.71086)
	mas (0.84122)
	ldo (0.582016)
	ssp (0.542079)
	ese (0.506009)
	sme (0.305437)
	hlv (0.278513)
	eru (0.240096)
	col (0.195008)
	nep (0.183925)
	ton (0.1755)
	eye (0.170503)
	nca (0.136874)