Ss1.1-Pig4-TMW8064B15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTCTCTCCAGCATCCACCATCTGCAGCAATTAGTATTCAGCGTCCTGCCCAATCACGGGA TGTGACAACAAGAATCACTCTGCCCTCTCACCCTGCGGACACCAAAACAGCAGCTCCATA CCATGGCTCAGAAAACGATCTTCAGTACGGGCACACCAGTGGCTGCGGCAACAGTAGCAC CAATTTTGGCAACGAACACCATTCCTTCAGCCACCACAGCCGGATCTGTGTCACACACAC AGGCACCCACGAGTACAATTGTTACCATGACAATGCCCTCCCATTCATCCCATGCTACGG CCGTGACCACCTCAAACATCCCGGTTGCTAAGGTGGTGCCTCAGCAAATCACACACACTT CTCCTCGGATCCAACCTGAGTACCCTGCAGAGAGGAGTAGCCTGATTCCCATTTCAGGAC ACCGAGCCTCTCCAAATCCTGTGGCCATGGAAACCCGAAGTGACAATAGACCGTCTGTTC CTGTTCAGTTCCAGTACTTTCTGCCAACGTACCCACCTTCAGCATACCCGCTGGCTGCTC ACACCTACACCCCCATCACCAGCTCTGTGTCCACCATTCGACAATATCCAGTTTCAGCTC AGGCTCCCAACTCTGCCATCACAGCTCAGACTGGAGTTGGGGTGGCGTCCACAGTCCACC TGAACCCCATGCAGTTGATGACAGTGGATGCTTCTCATGCTCGACACATCCAAGGGATCC AGCCAGCCCCCATCAGTACACAGGGTATCCAACCAGCCCCCATCGGGACCCCAGGGATCC AGCCAGCCCCCATTGGCACACAGGGAATTCACCCCGCAACCCCAAGCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTCTCTCCAGCATCCACCATCTGCAGCAATTAGTATTCAGCGTCCTGCCCAATCACGGGA TGTGACAACAAGAATCACTCTGCCCTCTCACCCTGCGGACACCAAAACAGCAGCTCCATA CCATGGCTCAGAAAACGATCTTCAGTACGGGCACACCAGTGGCTGCGGCAACAGTAGCAC CAATTTTGGCAACGAACACCATTCCTTCAGCCACCACAGCCGGATCTGTGTCACACACAC AGGCACCCACGAGTACAATTGTTACCATGACAATGCCCTCCCATTCATCCCATGCTACGG CCGTGACCACCTCAAACATCCCGGTTGCTAAGGTGGTGCCTCAGCAAATCACACACACTT CTCCTCGGATCCAACCTGAGTACCCTGCAGAGAGGAGTAGCCTGATTCCCATTTCAGGAC ACCGAGCCTCTCCAAATCCTGTGGCCATGGAAACCCGAAGTGACAATAGACCGTCTGTTC CTGTTCAGTTCCAGTACTTTCTGCCAACGTACCCACCTTCAGCATACCCGCTGGCTGCTC ACACCTACACCCCCATCACCAGCTCTGTGTCCACCATTCGACAATATCCAGTTTCAGCTC AGGCTCCCAACTCTGCCATCACAGCTCAGACTGGAGTTGGGGTGGCGTCCACAGTCCACC TGAACCCCATGCAGTTGATGACAGTGGATGCTTCTCATGCTCGACACATCCAAGGGATCC AGCCAGCCCCCATCAGTACACAGGGTATCCAACCAGCCCCCATCGGGACCCCAGGGATCC AGCCAGCCCCCATTGGCACACAGGGAATTCACCCCGCAACCCCAAGCA |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 351-469, - strand, RNAz p=0.562939 | |
| 692-794, - strand, RNAz p=0.551539 | |
| 709-828, - strand, RNAz p=0.595844 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 351-469, - strand, RNAz p=0.562939 | |
| 692-794, - strand, RNAz p=0.551539 | |
| 709-828, - strand, RNAz p=0.595844 |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 1-131, gnl|bosTau2|chr2 (1716037-1715902) | |
| 1-131, gnl|canFam2|chr19 (25635084-25634914) | |
| 1-131, gnl|danRer3|chr2 (14762215-14762370) | |
| 1-131, gnl|echTel1|scaffold_309763 (51989-52158) | |
| 1-131, gnl|fr1|chrUn (43392058-43391895) | |
| 1-131, gnl|galGal2|chr9 (928697-928869) | |
| 1-131, gnl|hg17|chr2 (128474101-128474270) | |
| 1-131, gnl|Hg17|chr2 (128474246-128474111) | |
| 1-131, gnl|loxAfr1|scaffold_96246 (33722-33891) | |
| 1-131, gnl|mm7|chr18 (32058575-32058403) | |
| 1-131, gnl|Mm7|chr18 (32058431-32058566) | |
| 1-131, gnl|monDom2|scaffold_24 (42904531-42904360) | |
| 1-131, gnl|panTro1|chr13 (14600763-14600932) | |
| 1-131, gnl|rheMac2|chr13 (134471015-134471184) | |
| 1-131, gnl|rn3|chr18 (24109778-24109606) | |
| 1-131, gnl|tetNig1|chr1_random (712174-712005) | |
| 1-131, gnl|xenTro1|scaffold_209 (1294011-1294169) | |
| 324-469, gnl|bosTau2|chr2 (1710907-1710762) | |
| 324-469, gnl|canFam2|chr19 (25640182-25640003) | |
| 324-469, gnl|danRer3|chr2 (14760001-14760184) | |
| 324-469, gnl|dasNov1|scaffold_15547 (47235-47411) | |
| 324-469, gnl|echTel1|scaffold_309763 (48485-48659) | |
| 324-469, gnl|fr1|chrUn (43392674-43392514) | |
| 324-469, gnl|galGal2|chr9 (926766-926922) | |
| 324-469, gnl|hg17|chr2 (128470150-128470330) | |
| 324-469, gnl|Hg17|chr2 (128470299-128470154) | |
| 324-469, gnl|loxAfr1|scaffold_130618 (789-968) | |
| 324-469, gnl|mm7|chr18 (32066580-32066399) | |
| 324-469, gnl|Mm7|chr18 (32066425-32066574) | |
| 324-469, gnl|monDom2|scaffold_24 (42913101-42912925) | |
| 324-469, gnl|oryCun1|scaffold_173116 (4892-4712) | |
| 324-469, gnl|panTro1|chr13 (14596757-14596937) | |
| 324-469, gnl|rheMac2|chr13 (134464896-134465076) | |
| 324-469, gnl|rn3|chr18 (24119948-24119767) | |
| 324-469, gnl|tetNig1|chr1_random (712782-712624) | |
| 324-469, gnl|xenTro1|scaffold_11469 (7254-7085) | |
| 590-828, gnl|bosTau2|chr2 (1703630-1703392) | |
| 590-828, gnl|canFam2|chr19 (25649003-25648729) | |
| 590-828, gnl|danRer3|chr2 (14755692-14755936) | |
| 590-828, gnl|dasNov1|scaffold_15547 (43198-43472) | |
| 590-828, gnl|echTel1|scaffold_309763 (44677-44951) | |
| 590-828, gnl|fr1|chrUn (43394376-43394120) | |
| 590-828, gnl|galGal2|chr9 (923515-923789) | |
| 590-828, gnl|hg17|chr2 (128463399-128463673) | |
| 590-828, gnl|Hg17|chr2 (128463672-128463434) | |
| 590-828, gnl|loxAfr1|scaffold_39943 (13878-14152) | |
| 590-828, gnl|mm7|chr18 (32072720-32072446) | |
| 590-828, gnl|Mm7|chr18 (32072445-32072683) | |
| 590-828, gnl|monDom2|scaffold_24 (42915641-42915367) | |
| 590-828, gnl|oryCun1|scaffold_109477 (12107-12381) | |
| 590-828, gnl|panTro1|chr13 (14590004-14590278) | |
| 590-828, gnl|rheMac2|chr13 (134457926-134458200) | |
| 590-828, gnl|rn3|chr18 (24125957-24125683) | |
| 590-828, gnl|tetNig1|chr1_random (713638-713382) | |
| 590-828, gnl|xenTro1|scaffold_209 (1287641-1287936) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-131, gnl|bosTau2|chr2 (1716037-1715902) | |
| 1-131, gnl|canFam2|chr19 (25635084-25634914) | |
| 1-131, gnl|danRer3|chr2 (14762215-14762370) | |
| 1-131, gnl|echTel1|scaffold_309763 (51989-52158) | |
| 1-131, gnl|fr1|chrUn (43392058-43391895) | |
| 1-131, gnl|galGal2|chr9 (928697-928869) | |
| 1-131, gnl|hg17|chr2 (128474101-128474270) | |
| 1-131, gnl|Hg17|chr2 (128474246-128474111) | |
| 1-131, gnl|loxAfr1|scaffold_96246 (33722-33891) | |
| 1-131, gnl|mm7|chr18 (32058575-32058403) | |
| 1-131, gnl|Mm7|chr18 (32058431-32058566) | |
| 1-131, gnl|monDom2|scaffold_24 (42904531-42904360) | |
| 1-131, gnl|panTro1|chr13 (14600763-14600932) | |
| 1-131, gnl|rheMac2|chr13 (134471015-134471184) | |
| 1-131, gnl|rn3|chr18 (24109778-24109606) | |
| 1-131, gnl|tetNig1|chr1_random (712174-712005) | |
| 1-131, gnl|xenTro1|scaffold_209 (1294011-1294169) | |
| 324-469, gnl|bosTau2|chr2 (1710907-1710762) | |
| 324-469, gnl|canFam2|chr19 (25640182-25640003) | |
| 324-469, gnl|danRer3|chr2 (14760001-14760184) | |
| 324-469, gnl|dasNov1|scaffold_15547 (47235-47411) | |
| 324-469, gnl|echTel1|scaffold_309763 (48485-48659) | |
| 324-469, gnl|fr1|chrUn (43392674-43392514) | |
| 324-469, gnl|galGal2|chr9 (926766-926922) | |
| 324-469, gnl|hg17|chr2 (128470150-128470330) | |
| 324-469, gnl|Hg17|chr2 (128470299-128470154) | |
| 324-469, gnl|loxAfr1|scaffold_130618 (789-968) | |
| 324-469, gnl|mm7|chr18 (32066580-32066399) | |
| 324-469, gnl|Mm7|chr18 (32066425-32066574) | |
| 324-469, gnl|monDom2|scaffold_24 (42913101-42912925) | |
| 324-469, gnl|oryCun1|scaffold_173116 (4892-4712) | |
| 324-469, gnl|panTro1|chr13 (14596757-14596937) | |
| 324-469, gnl|rheMac2|chr13 (134464896-134465076) | |
| 324-469, gnl|rn3|chr18 (24119948-24119767) | |
| 324-469, gnl|tetNig1|chr1_random (712782-712624) | |
| 324-469, gnl|xenTro1|scaffold_11469 (7254-7085) | |
| 590-828, gnl|bosTau2|chr2 (1703630-1703392) | |
| 590-828, gnl|canFam2|chr19 (25649003-25648729) | |
| 590-828, gnl|danRer3|chr2 (14755692-14755936) | |
| 590-828, gnl|dasNov1|scaffold_15547 (43198-43472) | |
| 590-828, gnl|echTel1|scaffold_309763 (44677-44951) | |
| 590-828, gnl|fr1|chrUn (43394376-43394120) | |
| 590-828, gnl|galGal2|chr9 (923515-923789) | |
| 590-828, gnl|hg17|chr2 (128463399-128463673) | |
| 590-828, gnl|Hg17|chr2 (128463672-128463434) | |
| 590-828, gnl|loxAfr1|scaffold_39943 (13878-14152) | |
| 590-828, gnl|mm7|chr18 (32072720-32072446) | |
| 590-828, gnl|Mm7|chr18 (32072445-32072683) | |
| 590-828, gnl|monDom2|scaffold_24 (42915641-42915367) | |
| 590-828, gnl|oryCun1|scaffold_109477 (12107-12381) | |
| 590-828, gnl|panTro1|chr13 (14590004-14590278) | |
| 590-828, gnl|rheMac2|chr13 (134457926-134458200) | |
| 590-828, gnl|rn3|chr18 (24125957-24125683) | |
| 590-828, gnl|tetNig1|chr1_random (713638-713382) | |
| 590-828, gnl|xenTro1|scaffold_209 (1287641-1287936) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.10408) |