Non-Coding RNA Search

Ss1.1-Pig4-TMW8064C06.5

Sequence:


               
               TTTTTTTTTACTTAAATAATCTTTATTTCTCATGCACTAGGAAAGACAGGATTGTATGAA
ACACTGCATTTCACAGCAAAGGCCTCGGTCCAGAACTCAACACAGGGGACCAGGTGGGAT
CCAGATCTGGTCAAAACTCTGGGGACCACAGTGGGGAGACTACCCCCAGGGCTGGTGGCC
GATCCAGGACCCTCCAGCTACAGTGCCCCAGACACAGCACAGGGTGGCTGCCCCTCCCAC
AGAGGCACAAGAAGAGGACACCAGAGGAGCATGTGGACCAGAGGAAGGACGGAGAAAGCT
GCTGGGCAGTGACCTGGTGGAGGCGGTGGTCCCGCAACTCCAGGGCTCGAGTCCAGGCAG
CCGGAGCTGTGACTCAGCCAGCTCTACCCACCCCGGGGCTGCTGGAGCGCCACAGACCCC
TGCAGCCCGTGCCCACTACACACGCGTACTGGCCACACTCAGCTGCCCCTGAGTCACATA
AACAAGACAGGGGCCTACACTTGAGCTCCAGCCAGAGCTTGGATTTGCCTGAGCAGGACC
CCAAGGCCTAGAGGGACCAGCCCCCCCACAACCATCCTGAGCTCTTGTGGACACGGAGAT
GCCTACAGAACAGCCAGGCTTCAGAGCATCCTGGGACAGGGCCATTGGCAGGGCGGCCCT
CACACCCGGGCCGTCAGGTGCCACCTGAGCCAAGACAAGGGCAAAGTGGATTGTGGGTAC
CACTTTCCCTGTGGTGGTACAGGGACAGGGACAGGCAGACATGCAGGGCAGAACGAAGAT
GAATGGACACATGCAGAGACCACACAGGGTGGGAGGGGTCTGCGGACAGAACACGGTCAA
GGTGCTGAGATGCGGGGGCGCTGCGAGGGCTGGGCTCACTGCGGCCCCGGGCTCATGGTG
AGGCCCGCCTCCTCCGGGATGGTCTCCAGCATCTCGCTCTGCACGGCCTGCGTGATGAGC
GCCAGCTCCTGGCACAGGGTCTCATGACGGTAGCCCACGCGGATGTCGGGCACGTTGGTG
CGGCGGATGTCGTTGCCCTCGGGGCCCTCCTTGGTATAGTTGGGTCCCAGCCAGTGGCTC
TTCACCTTGTGGGAGAAGCCGCTCATGAGCACACTATTGCGTGCCAACTCGCACATGTCG
CAGGAGCTGAGCTTCCACACCTGGGTGGCGATGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTACTTAAATAATCTTTATTTCTCATGCACTAGGAAAGACAGGATTGTATGAA
ACACTGCATTTCACAGCAAAGGCCTCGGTCCAGAACTCAACACAGGGGACCAGGTGGGAT
CCAGATCTGGTCAAAACTCTGGGGACCACAGTGGGGAGACTACCCCCAGGGCTGGTGGCC
GATCCAGGACCCTCCAGCTACAGTGCCCCAGACACAGCACAGGGTGGCTGCCCCTCCCAC
AGAGGCACAAGAAGAGGACACCAGAGGAGCATGTGGACCAGAGGAAGGACGGAGAAAGCT
GCTGGGCAGTGACCTGGTGGAGGCGGTGGTCCCGCAACTCCAGGGCTCGAGTCCAGGCAG
CCGGAGCTGTGACTCAGCCAGCTCTACCCACCCCGGGGCTGCTGGAGCGCCACAGACCCC
TGCAGCCCGTGCCCACTACACACGCGTACTGGCCACACTCAGCTGCCCCTGAGTCACATA
AACAAGACAGGGGCCTACACTTGAGCTCCAGCCAGAGCTTGGATTTGCCTGAGCAGGACC
CCAAGGCCTAGAGGGACCAGCCCCCCCACAACCATCCTGAGCTCTTGTGGACACGGAGAT
GCCTACAGAACAGCCAGGCTTCAGAGCATCCTGGGACAGGGCCATTGGCAGGGCGGCCCT
CACACCCGGGCCGTCAGGTGCCACCTGAGCCAAGACAAGGGCAAAGTGGATTGTGGGTAC
CACTTTCCCTGTGGTGGTACAGGGACAGGGACAGGCAGACATGCAGGGCAGAACGAAGAT
GAATGGACACATGCAGAGACCACACAGGGTGGGAGGGGTCTGCGGACAGAACACGGTCAA
GGTGCTGAGATGCGGGGGCGCTGCGAGGGCTGGGCTCACTGCGGCCCCGGGCTCATGGTG
AGGCCCGCCTCCTCCGGGATGGTCTCCAGCATCTCGCTCTGCACGGCCTGCGTGATGAGC
GCCAGCTCCTGGCACAGGGTCTCATGACGGTAGCCCACGCGGATGTCGGGCACGTTGGTG
CGGCGGATGTCGTTGCCCTCGGGGCCCTCCTTGGTATAGTTGGGTCCCAGCCAGTGGCTC
TTCACCTTGTGGGAGAAGCCGCTCATGAGCACACTATTGCGTGCCAACTCGCACATGTCG
CAGGAGCTGAGCTTCCACACCTGGGTGGCGATGCTG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61828243|ref|XP_602742.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61828243|ref|XP_602742.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               449-567, - strand, RNAz p=0.866185
               

               
               646-759, - strand, RNAz p=0.959283

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               449-567, - strand, RNAz p=0.866185
               

               
               646-759, - strand, RNAz p=0.959283

Homologous human UTR: 2 entry(ies)

More info

Homologous human UTR: 2 entry(ies)

Help | Less info


               
               3' of NM_203404, -
               

               
               3' of NM_203404, -

Homologous human UTR: 2 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_203404, -
               

               
               3' of NM_203404, -

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               8-1093, gnl|bosTau2|chr3 (25832316-25833389)
               

               
               8-1093, gnl|Hg17|chr1 (109886715-109885598)
               

               
               8-1093, gnl|Mm7|chr3 (107892350-107893417)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-1093, gnl|bosTau2|chr3 (25832316-25833389)
               

               
               8-1093, gnl|Hg17|chr1 (109886715-109885598)
               

               
               8-1093, gnl|Mm7|chr3 (107892350-107893417)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               fce (0.271592)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               med (0.116252)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               med (0.116252)

	449-567, - strand, RNAz p=0.866185
	646-759, - strand, RNAz p=0.959283

	8-1093, gnl\|bosTau2\|chr3 (25832316-25833389)
	8-1093, gnl\|Hg17\|chr1 (109886715-109885598)
	8-1093, gnl\|Mm7\|chr3 (107892350-107893417)

	fce (0.271592)
	lnt (0.142308)
	pla (0.133672)
	nmm (0.132802)
	med (0.116252)