Ss1.1-Pig4-TMW8064C10.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCTGCTCCTGGCTGCTTATTACTCTTCCACTGTTTCCTGATGTCACAGGCCAGCCCAGA TGAGTGGGAAATAAGTGACTGTTGTCACATCCGGAGTGAATACCAGGATAAACCATGTTC TCCAATCCACCTTGTGTGAAGCCTGCTTCCTGCTGACAACCATGCAGAGAGGAATTCTTA ATTGAAAGCCTCCCTCCGTGTCTGGAATTCATAGCTGTTTCCCTGGCAGTACACCGGGGG TATTAAAGACCTTCGCTAGGCTGAGTGTACTGAGTATCTTGCCCACATCTCTGCGAAGTT GTAAATTTTTTTTCTGAAATAATTCCACATTCATCTTATTCTACAATGTGCACTTTATGC CTCCTGCCTTTTGATAACTTGTCCAGTAAAGGAGATGAGCCGCCAGAATGTTTAGAAAAA GTCTGTTCATGTCAGTACAGCTCTTGGGATGGCCTGTCCATTTACTTAAGGTTTCAAGAG GCACCACATGAAGCTCATGCTCCTTCTAGTCCATGTTGAAACAGCCCTGCTTTATTCAGA CCCAGTTCCTGTCTCCTTGCAGACCTAGAGCTGCTGCTTAGGTGCCATCTCCTTTCCTCC CCGATAGATGCACATTTTGTCAATGCCAGTACAATCTGTATGTTACTCCCAAGGACCTCT GGGAACTTGATGGGACCTGCAAGTGAGAAAATATTGAGAAGCCCATGATCTGTAAGCATT TGCTCTTGTTTCCAAATCACCACCGGGTTATTTCAGCTGTTTCCAAATGGCAGGTCATCA GCTAAACAAAAACACTTGTTTTCAATTTTGTCCTGCACTCCCAAGACTGAAGTAGATTTG GCTGAATTTCCATAGGAAATGACCAAGAAAAGACATCCAATTGGAGTCAGTTGAATTTCC TCAGCCTCAGTGGGGCCACTTCTGGTCTTTTCCACTTCTGCAGAATTTCCTGCAGCAAAT ACTTGTTTCTCCTTGTTTGCCTCCACTATGATGTTTGGATAAGAGATGGCCAGTGGAGAA TATTTATCTCTTAAAAAAAAAAAACTAAAAAGAACCTAGAATCTTCAACAGAGCAGTCAT TATGAAAATTGCTAATGGTGCCAAGGCCAAGGAAAAGGTTACAGAAAATGACTGTGGGAA GGAGTGATAACCCCCAGAATGCAAAATCAGGCGAGTATTATCTGGTGCTTGAACAAGGAG CTCCACTTTACAACTGGCTTTTTTTAGGACTTTTGAGGGACGCAGCAACAGAATATCCAT CCATAAAGGATGCAGTGCCCCAGCTTGTACTGCACCTGAATAGTTATGTGATAATTTACT AAGAAATCTAGTGTACTTTAAATTTTTTTCATAAAAGTTTACATTGTATTGTAGGTTAAC ATTAAATGTTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCTGCTCCTGGCTGCTTATTACTCTTCCACTGTTTCCTGATGTCACAGGCCAGCCCAGA TGAGTGGGAAATAAGTGACTGTTGTCACATCCGGAGTGAATACCAGGATAAACCATGTTC TCCAATCCACCTTGTGTGAAGCCTGCTTCCTGCTGACAACCATGCAGAGAGGAATTCTTA ATTGAAAGCCTCCCTCCGTGTCTGGAATTCATAGCTGTTTCCCTGGCAGTACACCGGGGG TATTAAAGACCTTCGCTAGGCTGAGTGTACTGAGTATCTTGCCCACATCTCTGCGAAGTT GTAAATTTTTTTTCTGAAATAATTCCACATTCATCTTATTCTACAATGTGCACTTTATGC CTCCTGCCTTTTGATAACTTGTCCAGTAAAGGAGATGAGCCGCCAGAATGTTTAGAAAAA GTCTGTTCATGTCAGTACAGCTCTTGGGATGGCCTGTCCATTTACTTAAGGTTTCAAGAG GCACCACATGAAGCTCATGCTCCTTCTAGTCCATGTTGAAACAGCCCTGCTTTATTCAGA CCCAGTTCCTGTCTCCTTGCAGACCTAGAGCTGCTGCTTAGGTGCCATCTCCTTTCCTCC CCGATAGATGCACATTTTGTCAATGCCAGTACAATCTGTATGTTACTCCCAAGGACCTCT GGGAACTTGATGGGACCTGCAAGTGAGAAAATATTGAGAAGCCCATGATCTGTAAGCATT TGCTCTTGTTTCCAAATCACCACCGGGTTATTTCAGCTGTTTCCAAATGGCAGGTCATCA GCTAAACAAAAACACTTGTTTTCAATTTTGTCCTGCACTCCCAAGACTGAAGTAGATTTG GCTGAATTTCCATAGGAAATGACCAAGAAAAGACATCCAATTGGAGTCAGTTGAATTTCC TCAGCCTCAGTGGGGCCACTTCTGGTCTTTTCCACTTCTGCAGAATTTCCTGCAGCAAAT ACTTGTTTCTCCTTGTTTGCCTCCACTATGATGTTTGGATAAGAGATGGCCAGTGGAGAA TATTTATCTCTTAAAAAAAAAAAACTAAAAAGAACCTAGAATCTTCAACAGAGCAGTCAT TATGAAAATTGCTAATGGTGCCAAGGCCAAGGAAAAGGTTACAGAAAATGACTGTGGGAA GGAGTGATAACCCCCAGAATGCAAAATCAGGCGAGTATTATCTGGTGCTTGAACAAGGAG CTCCACTTTACAACTGGCTTTTTTTAGGACTTTTGAGGGACGCAGCAACAGAATATCCAT CCATAAAGGATGCAGTGCCCCAGCTTGTACTGCACCTGAATAGTTATGTGATAATTTACT AAGAAATCTAGTGTACTTTAAATTTTTTTCATAAAAGTTTACATTGTATTGTAGGTTAAC ATTAAATGTTTT |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 5-111, + strand, RNAz p=0.999468 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 5-111, + strand, RNAz p=0.999468 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_014613, + |
| Aligned organism(s): 51 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
| 5-232, gnl|bosTau2|chr7 (26148959-26149193) | |
| 5-232, gnl|canFam2|chr4 (40012158-40011551) | |
| 5-232, gnl|dasNov1|scaffold_28989 (44105-44697) | |
| 5-232, gnl|echTel1|scaffold_304835 (29367-28769) | |
| 5-232, gnl|hg17|chr5 (175868128-175868734) | |
| 5-232, gnl|Hg17|chr5 (175868258-175868518) | |
| 5-232, gnl|loxAfr1|scaffold_30165 (10385-11002) | |
| 5-232, gnl|mm7|chr13 (53746851-53747315) | |
| 5-232, gnl|monDom2|scaffold_6 (18690054-18689410) | |
| 5-232, gnl|oryCun1|scaffold_142183 (14513-13984) | |
| 5-232, gnl|panTro1|chr4 (183321962-183322561) | |
| 5-232, gnl|rn3|chr17 (16010635-16010194) | |
| 248-467, gnl|bosTau2|chr7 (26149191-26149403) | |
| 248-467, gnl|canFam2|chr4 (40012158-40011551) | |
| 248-467, gnl|dasNov1|scaffold_28989 (44105-44697) | |
| 248-467, gnl|echTel1|scaffold_304835 (29367-28769) | |
| 248-467, gnl|hg17|chr5 (175868128-175868734) | |
| 248-467, gnl|Hg17|chr5 (175868516-175868732) | |
| 248-467, gnl|loxAfr1|scaffold_30165 (10385-11002) | |
| 248-467, gnl|mm7|chr13 (53746851-53747315) | |
| 248-467, gnl|Mm7|chr13 (53747096-53747321) | |
| 248-467, gnl|monDom2|scaffold_6 (18690054-18689410) | |
| 248-467, gnl|oryCun1|scaffold_142183 (14513-13984) | |
| 248-467, gnl|panTro1|chr4 (183321962-183322561) | |
| 248-467, gnl|rn3|chr17 (16010635-16010194) | |
| 523-1164, gnl|bosTau2|chr7 (26149438-26150069) | |
| 523-1164, gnl|canFam2|chr4 (40011501-40010672) | |
| 523-1164, gnl|dasNov1|scaffold_28989 (44748-45601) | |
| 523-1164, gnl|echTel1|scaffold_304835 (28718-28009) | |
| 523-1164, gnl|hg17|chr5 (175868784-175869637) | |
| 523-1164, gnl|Hg17|chr5 (175868793-175869434) | |
| 523-1164, gnl|loxAfr1|scaffold_30165 (11051-11845) | |
| 523-1164, gnl|mm7|chr13 (53747505-53748285) | |
| 523-1164, gnl|Mm7|chr13 (53747373-53748070) | |
| 523-1164, gnl|monDom2|scaffold_6 (18689361-18688532) | |
| 523-1164, gnl|oryCun1|scaffold_142183 (13959-13093) | |
| 523-1164, gnl|panTro1|chr4 (183322611-183323462) | |
| 523-1164, gnl|rn3|chr17 (16010007-16009219) | |
| 1219-1392, gnl|bosTau2|chr7 (26150162-26150337) | |
| 1219-1392, gnl|canFam2|chr4 (40011501-40010672) | |
| 1219-1392, gnl|dasNov1|scaffold_28989 (44748-45601) | |
| 1219-1392, gnl|echTel1|scaffold_304835 (28718-28009) | |
| 1219-1392, gnl|hg17|chr5 (175868784-175869637) | |
| 1219-1392, gnl|Hg17|chr5 (175869493-175869666) | |
| 1219-1392, gnl|loxAfr1|scaffold_30165 (11051-11845) | |
| 1219-1392, gnl|mm7|chr13 (53747505-53748285) | |
| 1219-1392, gnl|Mm7|chr13 (53748158-53748314) | |
| 1219-1392, gnl|monDom2|scaffold_6 (18689361-18688532) | |
| 1219-1392, gnl|oryCun1|scaffold_142183 (13959-13093) | |
| 1219-1392, gnl|panTro1|chr4 (183322611-183323462) | |
| 1219-1392, gnl|rn3|chr17 (16010007-16009219) |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-232, gnl|bosTau2|chr7 (26148959-26149193) | |
| 5-232, gnl|canFam2|chr4 (40012158-40011551) | |
| 5-232, gnl|dasNov1|scaffold_28989 (44105-44697) | |
| 5-232, gnl|echTel1|scaffold_304835 (29367-28769) | |
| 5-232, gnl|hg17|chr5 (175868128-175868734) | |
| 5-232, gnl|Hg17|chr5 (175868258-175868518) | |
| 5-232, gnl|loxAfr1|scaffold_30165 (10385-11002) | |
| 5-232, gnl|mm7|chr13 (53746851-53747315) | |
| 5-232, gnl|monDom2|scaffold_6 (18690054-18689410) | |
| 5-232, gnl|oryCun1|scaffold_142183 (14513-13984) | |
| 5-232, gnl|panTro1|chr4 (183321962-183322561) | |
| 5-232, gnl|rn3|chr17 (16010635-16010194) | |
| 248-467, gnl|bosTau2|chr7 (26149191-26149403) | |
| 248-467, gnl|canFam2|chr4 (40012158-40011551) | |
| 248-467, gnl|dasNov1|scaffold_28989 (44105-44697) | |
| 248-467, gnl|echTel1|scaffold_304835 (29367-28769) | |
| 248-467, gnl|hg17|chr5 (175868128-175868734) | |
| 248-467, gnl|Hg17|chr5 (175868516-175868732) | |
| 248-467, gnl|loxAfr1|scaffold_30165 (10385-11002) | |
| 248-467, gnl|mm7|chr13 (53746851-53747315) | |
| 248-467, gnl|Mm7|chr13 (53747096-53747321) | |
| 248-467, gnl|monDom2|scaffold_6 (18690054-18689410) | |
| 248-467, gnl|oryCun1|scaffold_142183 (14513-13984) | |
| 248-467, gnl|panTro1|chr4 (183321962-183322561) | |
| 248-467, gnl|rn3|chr17 (16010635-16010194) | |
| 523-1164, gnl|bosTau2|chr7 (26149438-26150069) | |
| 523-1164, gnl|canFam2|chr4 (40011501-40010672) | |
| 523-1164, gnl|dasNov1|scaffold_28989 (44748-45601) | |
| 523-1164, gnl|echTel1|scaffold_304835 (28718-28009) | |
| 523-1164, gnl|hg17|chr5 (175868784-175869637) | |
| 523-1164, gnl|Hg17|chr5 (175868793-175869434) | |
| 523-1164, gnl|loxAfr1|scaffold_30165 (11051-11845) | |
| 523-1164, gnl|mm7|chr13 (53747505-53748285) | |
| 523-1164, gnl|Mm7|chr13 (53747373-53748070) | |
| 523-1164, gnl|monDom2|scaffold_6 (18689361-18688532) | |
| 523-1164, gnl|oryCun1|scaffold_142183 (13959-13093) | |
| 523-1164, gnl|panTro1|chr4 (183322611-183323462) | |
| 523-1164, gnl|rn3|chr17 (16010007-16009219) | |
| 1219-1392, gnl|bosTau2|chr7 (26150162-26150337) | |
| 1219-1392, gnl|canFam2|chr4 (40011501-40010672) | |
| 1219-1392, gnl|dasNov1|scaffold_28989 (44748-45601) | |
| 1219-1392, gnl|echTel1|scaffold_304835 (28718-28009) | |
| 1219-1392, gnl|hg17|chr5 (175868784-175869637) | |
| 1219-1392, gnl|Hg17|chr5 (175869493-175869666) | |
| 1219-1392, gnl|loxAfr1|scaffold_30165 (11051-11845) | |
| 1219-1392, gnl|mm7|chr13 (53747505-53748285) | |
| 1219-1392, gnl|Mm7|chr13 (53748158-53748314) | |
| 1219-1392, gnl|monDom2|scaffold_6 (18689361-18688532) | |
| 1219-1392, gnl|oryCun1|scaffold_142183 (13959-13093) | |
| 1219-1392, gnl|panTro1|chr4 (183322611-183323462) | |
| 1219-1392, gnl|rn3|chr17 (16010007-16009219) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| kid (0.259471) | |
| fty (0.17584) | |
| nje (0.16592) | |
| cje (0.165235) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| ski (0.146735) | |
| med (0.116252) | |
| cbl (0.114797) | |
| spc (0.113366) | |
| cty (0.10408) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| kid (0.259471) | |
| fty (0.17584) | |
| nje (0.16592) | |
| cje (0.165235) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| ski (0.146735) | |
| med (0.116252) | |
| cbl (0.114797) | |
| spc (0.113366) | |
| cty (0.10408) |