Non-Coding RNA Search

Ss1.1-Pig4-TMW8064C19.5

Sequence:


               
               GTTAATTTCAAGGAGGAAAAATCCTTTGGTTTGGATGTATTTCGCTGAACATTTGAGTAG
TGACGGGGATCCCATCCAGTTGAGGAATACTTGCAATTCTCATTGGAGGGAATGTGCTTT
GGGGCTTTGGTCATCCTCCAGAAAGGAACAACAATGTGTATTTGGCCCAGTGTGATTGAT
TGGTTAATCTTTGGTAACTTTCACCTGAGTAGGATTTGCTGAATTAATGAATACTGAACT
TTAGTTATGAGTTGGCAAAAAAATAAAAGGTAGTGCTTATGCCTGTTTCTAAGCTAATAC
CAGGTTACTCAGTAACCAAGACCTGTTCTTCTATTTCCATTTCTTCTCAATAGCAACTAA
ATCAGTTTATTTTCTTGTGGCCAGAAATGCACTTATACCAAGTTTTGTCCCTGCTGTATT
AAAAGGTTCTTGGCTACGAATGCTGTAATAGTGCCCTATGTTATGGTTCTCTGGTGGAAC
TTTTTTTAGCAACTTACTACCAAAAAATTCTGCTGTGGTTGATGTTCAGTGATTCTTTAT
TTAGCAACTTTTTGATAAGTATTTGGGTTTCTGATTATTTTAATTAAAGTAGTTTTTTTT
TGGAGGGGGAGGTGATGAGGGCCCTTGATTACTGTCAAGTGAACTTGGATTTCCAGTTCA
TAAAGAAATATTTCCCAACCCCCAATTCTCCTGTTTTTAGCAATAACTCATTAACATGCC
ATTTGACTTTCAGAACATTACCCAGTTGATTTTGACTTGGCAGACTCTTTGGTGAAATTG
GAAAATAGGCTTATTTGAAATAAGGCACTTAGATATAAATTATATAAATGTATGACTTTT
ATAAATGACATAACATGAGTGTTCTCGCTACGTTCTGTGCTGGCCATGCTGCAGATTTTC
TGGAGGTATGACATGATGGTATTTTTCTTTTAATACTCAGATTAAAAATCAACTTTTCAC
CTCTCCCTTTTTTCAGAGTGACATTCCCCAGCTCCAGAACAATCTATAGCTATTTATATG
AGGTGCCCAAGACTCATTCATCAAAAGTGCTTCAGTCTTTGGTTTATTTCATGCGCTGTG
CCTTCAAAATGAAGTTTTTAAAAGGGACTTTAAACAAAGTTGAATAGTAGTTTTAAAAAG
TCAATCTGTGTAATTTATGTGAAATCTAACTGTAATGAGGTCCTTTCTGTTTTTTATATG
TAAACAGATCTACTAATCCTGTATAAAAGTTATTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTAATTTCAAGGAGGAAAAATCCTTTGGTTTGGATGTATTTCGCTGAACATTTGAGTAG
TGACGGGGATCCCATCCAGTTGAGGAATACTTGCAATTCTCATTGGAGGGAATGTGCTTT
GGGGCTTTGGTCATCCTCCAGAAAGGAACAACAATGTGTATTTGGCCCAGTGTGATTGAT
TGGTTAATCTTTGGTAACTTTCACCTGAGTAGGATTTGCTGAATTAATGAATACTGAACT
TTAGTTATGAGTTGGCAAAAAAATAAAAGGTAGTGCTTATGCCTGTTTCTAAGCTAATAC
CAGGTTACTCAGTAACCAAGACCTGTTCTTCTATTTCCATTTCTTCTCAATAGCAACTAA
ATCAGTTTATTTTCTTGTGGCCAGAAATGCACTTATACCAAGTTTTGTCCCTGCTGTATT
AAAAGGTTCTTGGCTACGAATGCTGTAATAGTGCCCTATGTTATGGTTCTCTGGTGGAAC
TTTTTTTAGCAACTTACTACCAAAAAATTCTGCTGTGGTTGATGTTCAGTGATTCTTTAT
TTAGCAACTTTTTGATAAGTATTTGGGTTTCTGATTATTTTAATTAAAGTAGTTTTTTTT
TGGAGGGGGAGGTGATGAGGGCCCTTGATTACTGTCAAGTGAACTTGGATTTCCAGTTCA
TAAAGAAATATTTCCCAACCCCCAATTCTCCTGTTTTTAGCAATAACTCATTAACATGCC
ATTTGACTTTCAGAACATTACCCAGTTGATTTTGACTTGGCAGACTCTTTGGTGAAATTG
GAAAATAGGCTTATTTGAAATAAGGCACTTAGATATAAATTATATAAATGTATGACTTTT
ATAAATGACATAACATGAGTGTTCTCGCTACGTTCTGTGCTGGCCATGCTGCAGATTTTC
TGGAGGTATGACATGATGGTATTTTTCTTTTAATACTCAGATTAAAAATCAACTTTTCAC
CTCTCCCTTTTTTCAGAGTGACATTCCCCAGCTCCAGAACAATCTATAGCTATTTATATG
AGGTGCCCAAGACTCATTCATCAAAAGTGCTTCAGTCTTTGGTTTATTTCATGCGCTGTG
CCTTCAAAATGAAGTTTTTAAAAGGGACTTTAAACAAAGTTGAATAGTAGTTTTAAAAAG
TCAATCTGTGTAATTTATGTGAAATCTAACTGTAATGAGGTCCTTTCTGTTTTTTATATG
TAAACAGATCTACTAATCCTGTATAAAAGTTATTTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               926-1045, - strand, RNAz p=0.701125

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               926-1045, - strand, RNAz p=0.701125

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1236, gnl|bosTau2|chr19 (15977815-15979062)
               

               
               1-1236, gnl|Hg17|chr17 (25818556-25819819)
               

               
               1-1236, gnl|Mm7|chr11 (76861194-76860007)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1236, gnl|bosTau2|chr19 (15977815-15979062)
               

               
               1-1236, gnl|Hg17|chr17 (25818556-25819819)
               

               
               1-1236, gnl|Mm7|chr11 (76861194-76860007)

Expressed library(ies): 27 entry(ies)

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Expressed library(ies): 27 entry(ies)

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               lyg (1.19792)
               

               
               pro (0.512033)
               

               
               spc (0.453463)
               

               
               amn (0.417711)
               

               
               sag (0.36543)
               

               
               eye (0.341006)
               

               
               mga (0.32041)
               

               
               ski (0.29347)
               

               
               lin (0.291206)
               

               
               cbl (0.229595)
               

               
               nms (0.213858)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               eli (0.151814)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               ldo (0.0970026)

Expressed library(ies): 27 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (1.19792)
               

               
               pro (0.512033)
               

               
               spc (0.453463)
               

               
               amn (0.417711)
               

               
               sag (0.36543)
               

               
               eye (0.341006)
               

               
               mga (0.32041)
               

               
               ski (0.29347)
               

               
               lin (0.291206)
               

               
               cbl (0.229595)
               

               
               nms (0.213858)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               eli (0.151814)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               ldo (0.0970026)

	1-1236, gnl\|bosTau2\|chr19 (15977815-15979062)
	1-1236, gnl\|Hg17\|chr17 (25818556-25819819)
	1-1236, gnl\|Mm7\|chr11 (76861194-76860007)

	lyg (1.19792)
	pro (0.512033)
	spc (0.453463)
	amn (0.417711)
	sag (0.36543)
	eye (0.341006)
	mga (0.32041)
	ski (0.29347)
	lin (0.291206)
	cbl (0.229595)
	nms (0.213858)
	aor (0.195274)
	col (0.195008)
	fbs (0.175346)
	rec (0.17307)
	fco (0.157208)
	tbr (0.154178)
	eli (0.151814)
	fat (0.147427)
	liv (0.146284)
	pty (0.142714)
	ova (0.129132)
	ret (0.128733)
	thg (0.126791)
	bla (0.124347)
	tra (0.123092)
	ldo (0.0970026)