Ss1.1-Pig4-TMW8064D16.3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGCCATGAAGTACTCGATTCACTACATCCAACAGAAGGTTGATCATTTTGGATTTAATA CTGATAAAACTTTTAAACAGCGGTATTTAATAGCTGATACACACTGGCGGAAAGATGGTG GATCAATACTTTTCTACACTGGTAATGAAGGGGACATTATCTGGTTTTGCAATAATACGG GGTTCATGTGGGATGTAGCTGAGGAACTGAAAGCTATGTTGGTGTTTGCTGAACATCGAT ACTATGGCGAGTCCCTCCCCTTTGGTGCCCACTCATTCAAAGATTCCAGACACTTGAATT TTCTGACATCAGAACAAGCTCTGGCTGATTTTGCAGAGTTAATCAGACACTTGAAAAGAA AAATCCCAGGAACTGAAAATCAACCTGTTATTGCTCTTGGGGGCTCTTACGGTGGCATGC TTGCAGCCTGGTTCAGGATGAAGTACCCTCATATGGTGGTTGGAGCTCTTGCATCCTCTG CCCCCATTTGGCACTTTGAGAATTTGGTACCTTGTGGTATATTTATGAAGACTGTAACTA AAGATTTTAGGGAAAGTGGCCCAAATTGTTCAGAGACCATCCGCAGGTCCTGGGATGCCA TTAATCGACTTGCAAGAAAGGGCACTGGTTTGCATTGGCTTTCTGAAGCCCTTCACTTAT GCACTCCGTTAACAAATTCTCAGGATGTTCAGCGTTTGAAAGACTGGATTTCTGAAACTT GGGTCAATCTGGCAATGGTGGACTACCCTTATGAGTCTGACTTTCTGCAGCCTTTGCCTG CTTGGCCTATCAAGGTAGTATGCCAGTATTTGAAAAATCCCAATGTATCTGATTCACTGC TAGTGCAGAATATTTTCCAAGCTCTGAATGTATATTATAATTATTCAGGCCAAGCTAGAT GCCTGAATATATCGGAGACAGCAACCAGCAGTCTGGGAGCCCTGGGTTGGAGCTATCAAG CCTGCACAGAAATGGTTATGCCCTTCTGTTCTAATGGTATTGATGACATGTTTGAACCTA ACTCATGGGACTTGAAGGAATTTTCTGATGACTGTTTTAGACAGTGGGGTGTGAGACCAA GGCCCTACTGGATCACTACTGTATATGGAGGCAAAAACATCAGTTCACACACGAACATCA TTTTCAGCAATGGTGAACTAGACCCCTGGTCAGGAGGTGGTGTAACCAAGAATGTTACAG ACACCTTAGTTGCGATTGTCATCCCAAAGGGAGCCCATCATCTAGATCTCCGAGCCAACA CTGCCTTTGATCCCACCACTGTGCTCTTAGCCCGCTCCTTGGAAGTCAGATATATGAAGC AGTGGATCAAAGATTTCTATGCCAGTCTGAGAAGGAAGCACTGAATTTGGTGTGGCGAAG GTTGGGATAGAAGAGAACATCATGGTGGTGGTAGCAGCCATCCCCTAACCTGAGTCCTTG CCGTCTTTGTGCCACCCCCAGGAAGAATTTCTCCATGACAGCTTTCCCACACCATCAGTG GCCTTCATAACTGGAGCAGAGCATTGACTGCCTTTCACAAGAGGGAGAGTCACTTCCTTT GTTTCTCTGAAAGCAGGGATTTCTCTTGGTTTTGAAGTTGAAGTCTCTTTGGCTCATTTG TCCCTCCCCCTCCTGTATCCTCCAAAAGGAAAAGCAGAAGATGGATAAAAATGAAGTAAT TGCAGCTGGTAGGAAGGATTTCGATGCCAAGCCAGGAAATGGGGGCCGTTTCTTTTGTGC TTCATTTAATGACTTTGAACTGTGCTGTAAATAAAGAATAAGGCTGGACCGTAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGCCATGAAGTACTCGATTCACTACATCCAACAGAAGGTTGATCATTTTGGATTTAATA CTGATAAAACTTTTAAACAGCGGTATTTAATAGCTGATACACACTGGCGGAAAGATGGTG GATCAATACTTTTCTACACTGGTAATGAAGGGGACATTATCTGGTTTTGCAATAATACGG GGTTCATGTGGGATGTAGCTGAGGAACTGAAAGCTATGTTGGTGTTTGCTGAACATCGAT ACTATGGCGAGTCCCTCCCCTTTGGTGCCCACTCATTCAAAGATTCCAGACACTTGAATT TTCTGACATCAGAACAAGCTCTGGCTGATTTTGCAGAGTTAATCAGACACTTGAAAAGAA AAATCCCAGGAACTGAAAATCAACCTGTTATTGCTCTTGGGGGCTCTTACGGTGGCATGC TTGCAGCCTGGTTCAGGATGAAGTACCCTCATATGGTGGTTGGAGCTCTTGCATCCTCTG CCCCCATTTGGCACTTTGAGAATTTGGTACCTTGTGGTATATTTATGAAGACTGTAACTA AAGATTTTAGGGAAAGTGGCCCAAATTGTTCAGAGACCATCCGCAGGTCCTGGGATGCCA TTAATCGACTTGCAAGAAAGGGCACTGGTTTGCATTGGCTTTCTGAAGCCCTTCACTTAT GCACTCCGTTAACAAATTCTCAGGATGTTCAGCGTTTGAAAGACTGGATTTCTGAAACTT GGGTCAATCTGGCAATGGTGGACTACCCTTATGAGTCTGACTTTCTGCAGCCTTTGCCTG CTTGGCCTATCAAGGTAGTATGCCAGTATTTGAAAAATCCCAATGTATCTGATTCACTGC TAGTGCAGAATATTTTCCAAGCTCTGAATGTATATTATAATTATTCAGGCCAAGCTAGAT GCCTGAATATATCGGAGACAGCAACCAGCAGTCTGGGAGCCCTGGGTTGGAGCTATCAAG CCTGCACAGAAATGGTTATGCCCTTCTGTTCTAATGGTATTGATGACATGTTTGAACCTA ACTCATGGGACTTGAAGGAATTTTCTGATGACTGTTTTAGACAGTGGGGTGTGAGACCAA GGCCCTACTGGATCACTACTGTATATGGAGGCAAAAACATCAGTTCACACACGAACATCA TTTTCAGCAATGGTGAACTAGACCCCTGGTCAGGAGGTGGTGTAACCAAGAATGTTACAG ACACCTTAGTTGCGATTGTCATCCCAAAGGGAGCCCATCATCTAGATCTCCGAGCCAACA CTGCCTTTGATCCCACCACTGTGCTCTTAGCCCGCTCCTTGGAAGTCAGATATATGAAGC AGTGGATCAAAGATTTCTATGCCAGTCTGAGAAGGAAGCACTGAATTTGGTGTGGCGAAG GTTGGGATAGAAGAGAACATCATGGTGGTGGTAGCAGCCATCCCCTAACCTGAGTCCTTG CCGTCTTTGTGCCACCCCCAGGAAGAATTTCTCCATGACAGCTTTCCCACACCATCAGTG GCCTTCATAACTGGAGCAGAGCATTGACTGCCTTTCACAAGAGGGAGAGTCACTTCCTTT GTTTCTCTGAAAGCAGGGATTTCTCTTGGTTTTGAAGTTGAAGTCTCTTTGGCTCATTTG TCCCTCCCCCTCCTGTATCCTCCAAAAGGAAAAGCAGAAGATGGATAAAAATGAAGTAAT TGCAGCTGGTAGGAAGGATTTCGATGCCAAGCCAGGAAATGGGGGCCGTTTCTTTTGTGC TTCATTTAATGACTTTGAACTGTGCTGTAAATAAAGAATAAGGCTGGACCGTAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1469-1587, + strand, RNAz p=0.572893 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1469-1587, + strand, RNAz p=0.572893 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_005040, + |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 945-1147, gnl|bosTau2|chr29 (9623249-9623451) | |
| 945-1147, gnl|canFam2|chr21 (19278583-19278335) | |
| 945-1147, gnl|danRer3|chr3 (34756465-34756248) | |
| 945-1147, gnl|echTel1|scaffold_274007 (4484-4730) | |
| 945-1147, gnl|fr1|chrUn (54769492-54769284) | |
| 945-1147, gnl|galGal2|chr1 (180723890-180724120) | |
| 945-1147, gnl|hg17|chr11 (82227062-82227309) | |
| 945-1147, gnl|Hg17|chr11 (82227278-82227077) | |
| 945-1147, gnl|loxAfr1|scaffold_145253 (4625-4378) | |
| 945-1147, gnl|mm7|chr7 (89031039-89030805) | |
| 945-1147, gnl|Mm7|chr7 (89030823-89031022) | |
| 945-1147, gnl|monDom2|scaffold_46 (5716785-5716556) | |
| 945-1147, gnl|panTro1|chr9 (83608000-83608247) | |
| 945-1147, gnl|rheMac2|chr14 (81101168-81101415) | |
| 945-1147, gnl|rn3|chr1 (149836685-149836447) | |
| 945-1147, gnl|tetNig1|chrUn_random (86901297-86901098) | |
| 945-1147, gnl|xenTro1|scaffold_517 (706961-707169) | |
| 1359-1793, gnl|bosTau2|chr29 (9631228-9631664) | |
| 1359-1793, gnl|canFam2|chr21 (19288956-19288428) | |
| 1359-1793, gnl|canFam2|chr21 (19289134-19288480) | |
| 1359-1793, gnl|dasNov1|scaffold_23895 (13607-14140) | |
| 1359-1793, gnl|dasNov1|scaffold_23895 (13435-14086) | |
| 1359-1793, gnl|echTel1|scaffold_242397 (2937-3483) | |
| 1359-1793, gnl|echTel1|scaffold_242397 (2765-3430) | |
| 1359-1793, gnl|hg17|chr11 (82212900-82213578) | |
| 1359-1793, gnl|Hg17|chr11 (82213498-82213057) | |
| 1359-1793, gnl|hg17|chr2 (101595286-101595836) | |
| 1359-1793, gnl|loxAfr1|scaffold_35828 (10468-11003) | |
| 1359-1793, gnl|loxAfr1|scaffold_35828 (10289-10949) | |
| 1359-1793, gnl|mm7|chr7 (88941162-88940653) | |
| 1359-1793, gnl|mm7|chr7 (89040111-89039485) | |
| 1359-1793, gnl|Mm7|chr7 (89039569-89039964) | |
| 1359-1793, gnl|monDom2|scaffold_46 (5734770-5734074) | |
| 1359-1793, gnl|oryCun1|scaffold_196811 (16739-17248) | |
| 1359-1793, gnl|oryCun1|scaffold_196811 (16565-17195) | |
| 1359-1793, gnl|panTro1|chr12 (104493326-104493876) | |
| 1359-1793, gnl|panTro1|chr9 (83593842-83594520) | |
| 1359-1793, gnl|rheMac2|chr13 (101475281-101475844) | |
| 1359-1793, gnl|rheMac2|chr14 (81086988-81087666) | |
| 1359-1793, gnl|rn3|chr1 (149841935-149841423) | |
| 1359-1793, gnl|rn3|chr1 (149948460-149947857) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 945-1147, gnl|bosTau2|chr29 (9623249-9623451) | |
| 945-1147, gnl|canFam2|chr21 (19278583-19278335) | |
| 945-1147, gnl|danRer3|chr3 (34756465-34756248) | |
| 945-1147, gnl|echTel1|scaffold_274007 (4484-4730) | |
| 945-1147, gnl|fr1|chrUn (54769492-54769284) | |
| 945-1147, gnl|galGal2|chr1 (180723890-180724120) | |
| 945-1147, gnl|hg17|chr11 (82227062-82227309) | |
| 945-1147, gnl|Hg17|chr11 (82227278-82227077) | |
| 945-1147, gnl|loxAfr1|scaffold_145253 (4625-4378) | |
| 945-1147, gnl|mm7|chr7 (89031039-89030805) | |
| 945-1147, gnl|Mm7|chr7 (89030823-89031022) | |
| 945-1147, gnl|monDom2|scaffold_46 (5716785-5716556) | |
| 945-1147, gnl|panTro1|chr9 (83608000-83608247) | |
| 945-1147, gnl|rheMac2|chr14 (81101168-81101415) | |
| 945-1147, gnl|rn3|chr1 (149836685-149836447) | |
| 945-1147, gnl|tetNig1|chrUn_random (86901297-86901098) | |
| 945-1147, gnl|xenTro1|scaffold_517 (706961-707169) | |
| 1359-1793, gnl|bosTau2|chr29 (9631228-9631664) | |
| 1359-1793, gnl|canFam2|chr21 (19288956-19288428) | |
| 1359-1793, gnl|canFam2|chr21 (19289134-19288480) | |
| 1359-1793, gnl|dasNov1|scaffold_23895 (13607-14140) | |
| 1359-1793, gnl|dasNov1|scaffold_23895 (13435-14086) | |
| 1359-1793, gnl|echTel1|scaffold_242397 (2937-3483) | |
| 1359-1793, gnl|echTel1|scaffold_242397 (2765-3430) | |
| 1359-1793, gnl|hg17|chr11 (82212900-82213578) | |
| 1359-1793, gnl|Hg17|chr11 (82213498-82213057) | |
| 1359-1793, gnl|hg17|chr2 (101595286-101595836) | |
| 1359-1793, gnl|loxAfr1|scaffold_35828 (10468-11003) | |
| 1359-1793, gnl|loxAfr1|scaffold_35828 (10289-10949) | |
| 1359-1793, gnl|mm7|chr7 (88941162-88940653) | |
| 1359-1793, gnl|mm7|chr7 (89040111-89039485) | |
| 1359-1793, gnl|Mm7|chr7 (89039569-89039964) | |
| 1359-1793, gnl|monDom2|scaffold_46 (5734770-5734074) | |
| 1359-1793, gnl|oryCun1|scaffold_196811 (16739-17248) | |
| 1359-1793, gnl|oryCun1|scaffold_196811 (16565-17195) | |
| 1359-1793, gnl|panTro1|chr12 (104493326-104493876) | |
| 1359-1793, gnl|panTro1|chr9 (83593842-83594520) | |
| 1359-1793, gnl|rheMac2|chr13 (101475281-101475844) | |
| 1359-1793, gnl|rheMac2|chr14 (81086988-81087666) | |
| 1359-1793, gnl|rn3|chr1 (149841935-149841423) | |
| 1359-1793, gnl|rn3|chr1 (149948460-149947857) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| cga (0.558191) | |
| spl (0.429553) | |
| fce (0.271592) | |
| ova (0.258264) | |
| ece (0.229305) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| eye (0.170503) | |
| csp (0.161186) | |
| lnt (0.142308) | |
| che (0.136314) | |
| ste (0.135208) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| eep (0.122564) | |
| ecc (0.115035) | |
| cbl (0.114797) | |
| spc (0.113366) | |
| eje (0.0988338) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cga (0.558191) | |
| spl (0.429553) | |
| fce (0.271592) | |
| ova (0.258264) | |
| ece (0.229305) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| eye (0.170503) | |
| csp (0.161186) | |
| lnt (0.142308) | |
| che (0.136314) | |
| ste (0.135208) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| eep (0.122564) | |
| ecc (0.115035) | |
| cbl (0.114797) | |
| spc (0.113366) | |
| eje (0.0988338) |