Ss1.1-Pig4-TMW8064E02.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGAGGAAGGCGTGACCATTGGAGTCTGGCACACCGTACCAGCTGTCTGGTGGAAGAATG CCCAAGGGAAGGACCAGATCTGGTATGAGGATGCCTTGGCTTCCAGCCGCCCTATTATCC TGTACCTGCACGGGAACGCGGGCACCAGAGGAGGCGACCACCGGGTGGAGCTCTACAAGG TGCTGAGTTCCCTTGGCTACCATGTGGTCACCTTTGACTACAGAGGTTGGGGTGACTCCG TGGGAACGCCATCGGAGCGGGGCATGACGTATGATGCACTCCATGTCTTTGACTGGATCA AAGCGCGAAGTGGCGACAACCCTGTATATATTTGGGGCCATTCCCTTGGCACTGGAGTGG CCACCAACCTGGTGCGGCGCCTGTGTGAGCGAGAGACACCTCCAGATGCCCTCATATTGG AGTCTCCATTCACGAACATCCGTGAAGAAGCTAAGAGCCATCCATTCTCAGTGATCTATC GCTACTTTCCTGGGTTTGACTGGTTCTTCCTCGATCCCATCACCAGCAGTGGAATTCAGT TTGCAAATGATGAAAATGTGAAGCACATCTCCTGCTCTCTGCTTATCCTACATGCCGAGG ACGACCCGGTCGTGCCCTTCCAGCTTGGCAGAAAGCTCTACAGTATTGCTGCGCCATCCC GAAGCTTCCGAGACTTCAAGGTTCAGTTCATCCCCTTCCACTCGGACCTCGGCTACAGGC ACAAGTACATCTACAAGAGTCCCGAGCTCCCACGGATCCTGAGGGAATTCCTGGGGAAGT CGGAACCCGCTGCCTGAAGGAGCATGAAGATCTCTGCCCTCACCCCCGGTCCTCCAGCCA GCCCGGCACCCCGGAGATGCACCTGAGAGAGGACTTGGATGCCAGGGGACAGCAGAGGTG CCTGCCCCAGGTGGCTGGGAGCATGGATCTCTGTGGACAACACGGGTGGCGGGCACGTGG CCCTCTCTCCCTCTTGCTGCCACCTGACTTGAGGTCTTGTTGGGAAGACCGTCACAGAAC AGTCTGGCCATCAGTTAGTTGATCCCATACCTCCTGAGCCAGGCCTGGGGAGCCTGTGGC CGGAGGCGTGGGGTCTCGGGACCACACTGAGCTTTCTGGCACCACTCTCAAGAATGTGGG GAAACTTGGTTCTTTTTGTCCCTTCCCAGCACACATGGAATGGACTCTAGTGGTTCCACC AGCCTCTCCCGCCTTGTGCACCCTGCTTGCCTTCCTTGGGGTCCCTGTCTCCCTGGGTGG CCCCACTGCTCCCAGCGGGGGAGGTGCCCTGACCAGCCTTCCTCCCATTTCCACCCACCT CTGCCTAACCTGGCCTTAGACTGAGCGTTTATTTAAGAATAAAATCGTGGTGGTGGTCAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGAGGAAGGCGTGACCATTGGAGTCTGGCACACCGTACCAGCTGTCTGGTGGAAGAATG CCCAAGGGAAGGACCAGATCTGGTATGAGGATGCCTTGGCTTCCAGCCGCCCTATTATCC TGTACCTGCACGGGAACGCGGGCACCAGAGGAGGCGACCACCGGGTGGAGCTCTACAAGG TGCTGAGTTCCCTTGGCTACCATGTGGTCACCTTTGACTACAGAGGTTGGGGTGACTCCG TGGGAACGCCATCGGAGCGGGGCATGACGTATGATGCACTCCATGTCTTTGACTGGATCA AAGCGCGAAGTGGCGACAACCCTGTATATATTTGGGGCCATTCCCTTGGCACTGGAGTGG CCACCAACCTGGTGCGGCGCCTGTGTGAGCGAGAGACACCTCCAGATGCCCTCATATTGG AGTCTCCATTCACGAACATCCGTGAAGAAGCTAAGAGCCATCCATTCTCAGTGATCTATC GCTACTTTCCTGGGTTTGACTGGTTCTTCCTCGATCCCATCACCAGCAGTGGAATTCAGT TTGCAAATGATGAAAATGTGAAGCACATCTCCTGCTCTCTGCTTATCCTACATGCCGAGG ACGACCCGGTCGTGCCCTTCCAGCTTGGCAGAAAGCTCTACAGTATTGCTGCGCCATCCC GAAGCTTCCGAGACTTCAAGGTTCAGTTCATCCCCTTCCACTCGGACCTCGGCTACAGGC ACAAGTACATCTACAAGAGTCCCGAGCTCCCACGGATCCTGAGGGAATTCCTGGGGAAGT CGGAACCCGCTGCCTGAAGGAGCATGAAGATCTCTGCCCTCACCCCCGGTCCTCCAGCCA GCCCGGCACCCCGGAGATGCACCTGAGAGAGGACTTGGATGCCAGGGGACAGCAGAGGTG CCTGCCCCAGGTGGCTGGGAGCATGGATCTCTGTGGACAACACGGGTGGCGGGCACGTGG CCCTCTCTCCCTCTTGCTGCCACCTGACTTGAGGTCTTGTTGGGAAGACCGTCACAGAAC AGTCTGGCCATCAGTTAGTTGATCCCATACCTCCTGAGCCAGGCCTGGGGAGCCTGTGGC CGGAGGCGTGGGGTCTCGGGACCACACTGAGCTTTCTGGCACCACTCTCAAGAATGTGGG GAAACTTGGTTCTTTTTGTCCCTTCCCAGCACACATGGAATGGACTCTAGTGGTTCCACC AGCCTCTCCCGCCTTGTGCACCCTGCTTGCCTTCCTTGGGGTCCCTGTCTCCCTGGGTGG CCCCACTGCTCCCAGCGGGGGAGGTGCCCTGACCAGCCTTCCTCCCATTTCCACCCACCT CTGCCTAACCTGGCCTTAGACTGAGCGTTTATTTAAGAATAAAATCGTGGTGGTGGTCAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 64 entry(ies) | More info |
| Aligned organism(s): 64 entry(ies) | Help | Less info |
| 28-153, gnl|bosTau2|chr13 (27947515-27947640) | |
| 28-153, gnl|canFam2|chr23 (4510225-4510362) | |
| 28-153, gnl|danRer3|chr17 (18224089-18224220) | |
| 28-153, gnl|dasNov1|scaffold_8762 (6395-6260) | |
| 28-153, gnl|echTel1|scaffold_279507 (42364-42471) | |
| 28-153, gnl|hg17|chr20 (25248829-25248966) | |
| 28-153, gnl|Hg17|chr20 (25248955-25248830) | |
| 28-153, gnl|loxAfr1|scaffold_19129 (7709-7844) | |
| 28-153, gnl|mm7|chr2 (150587097-150587232) | |
| 28-153, gnl|Mm7|chr2 (150587221-150587097) | |
| 28-153, gnl|oryCun1|scaffold_206084 (62509-62646) | |
| 28-153, gnl|panTro1|chr21 (25640748-25640885) | |
| 28-153, gnl|rheMac2|chr10 (58522115-58522252) | |
| 28-153, gnl|rn3|chr3 (141388686-141388821) | |
| 28-153, gnl|tetNig1|chr17 (7734570-7734441) | |
| 224-355, gnl|bosTau2|chr13 (27953553-27953684) | |
| 224-355, gnl|canFam2|chr23 (4503729-4503893) | |
| 224-355, gnl|danRer3|chr17 (18223022-18223158) | |
| 224-355, gnl|dasNov1|scaffold_5177 (2262-2422) | |
| 224-355, gnl|echTel1|scaffold_317761 (513-354) | |
| 224-355, gnl|fr1|chrUn (139312241-139312095) | |
| 224-355, gnl|hg17|chr20 (25238073-25238238) | |
| 224-355, gnl|Hg17|chr20 (25238213-25238082) | |
| 224-355, gnl|loxAfr1|scaffold_32701 (9544-9696) | |
| 224-355, gnl|mm7|chr2 (150580568-150580722) | |
| 224-355, gnl|Mm7|chr2 (150580708-150580577) | |
| 224-355, gnl|oryCun1|scaffold_206084 (56165-56329) | |
| 224-355, gnl|panTro1|chr21 (25629978-25630143) | |
| 224-355, gnl|rheMac2|chr10 (58512790-58512955) | |
| 224-355, gnl|rn3|chr3 (141381835-141381989) | |
| 224-355, gnl|tetNig1|chr10 (11260172-11260317) | |
| 224-355, gnl|xenTro1|scaffold_911 (393735-393881) | |
| 634-764, gnl|bosTau2|chr13 (27958576-27958706) | |
| 634-764, gnl|canFam2|chr23 (4497933-4498097) | |
| 634-764, gnl|danRer3|chr17 (18216696-18216845) | |
| 634-764, gnl|dasNov1|scaffold_23671 (45359-45546) | |
| 634-764, gnl|echTel1|scaffold_157703 (1103-934) | |
| 634-764, gnl|fr1|chrUn (139313637-139313468) | |
| 634-764, gnl|galGal2|chr3 (4075041-4075198) | |
| 634-764, gnl|hg17|chr20 (25230844-25231021) | |
| 634-764, gnl|Hg17|chr20 (25230984-25230854) | |
| 634-764, gnl|loxAfr1|scaffold_31912 (14539-14708) | |
| 634-764, gnl|mm7|chr2 (150575125-150575297) | |
| 634-764, gnl|Mm7|chr2 (150575265-150575135) | |
| 634-764, gnl|monDom2|scaffold_1 (62563196-62563367) | |
| 634-764, gnl|panTro1|chr21 (25622755-25622924) | |
| 634-764, gnl|rheMac2|chr10 (58505167-58505346) | |
| 634-764, gnl|rn3|chr3 (141376231-141376403) | |
| 634-764, gnl|tetNig1|chr17 (7736504-7736363) | |
| 634-764, gnl|xenTro1|scaffold_911 (389117-389265) | |
| 799-1378, gnl|bosTau2|chr13 (27959700-27960282) | |
| 799-1378, gnl|canFam2|chr23 (4496498-4496917) | |
| 799-1378, gnl|dasNov1|scaffold_23671 (43083-43557) | |
| 799-1378, gnl|echTel1|scaffold_157703 (2744-2227) | |
| 799-1378, gnl|hg17|chr20 (25228851-25229346) | |
| 799-1378, gnl|Hg17|chr20 (25229464-25228850) | |
| 799-1378, gnl|loxAfr1|scaffold_31912 (12556-13076) | |
| 799-1378, gnl|mm7|chr2 (150573373-150573828) | |
| 799-1378, gnl|Mm7|chr2 (150573943-150573372) | |
| 799-1378, gnl|monDom2|scaffold_1 (62561768-62562344) | |
| 799-1378, gnl|oryCun1|scaffold_206084 (48182-48573) | |
| 799-1378, gnl|panTro1|chr21 (25620773-25621268) | |
| 799-1378, gnl|rheMac2|chr10 (58503155-58503652) | |
| 799-1378, gnl|rn3|chr3 (141374464-141374924) |
| Aligned organism(s): 64 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 28-153, gnl|bosTau2|chr13 (27947515-27947640) | |
| 28-153, gnl|canFam2|chr23 (4510225-4510362) | |
| 28-153, gnl|danRer3|chr17 (18224089-18224220) | |
| 28-153, gnl|dasNov1|scaffold_8762 (6395-6260) | |
| 28-153, gnl|echTel1|scaffold_279507 (42364-42471) | |
| 28-153, gnl|hg17|chr20 (25248829-25248966) | |
| 28-153, gnl|Hg17|chr20 (25248955-25248830) | |
| 28-153, gnl|loxAfr1|scaffold_19129 (7709-7844) | |
| 28-153, gnl|mm7|chr2 (150587097-150587232) | |
| 28-153, gnl|Mm7|chr2 (150587221-150587097) | |
| 28-153, gnl|oryCun1|scaffold_206084 (62509-62646) | |
| 28-153, gnl|panTro1|chr21 (25640748-25640885) | |
| 28-153, gnl|rheMac2|chr10 (58522115-58522252) | |
| 28-153, gnl|rn3|chr3 (141388686-141388821) | |
| 28-153, gnl|tetNig1|chr17 (7734570-7734441) | |
| 224-355, gnl|bosTau2|chr13 (27953553-27953684) | |
| 224-355, gnl|canFam2|chr23 (4503729-4503893) | |
| 224-355, gnl|danRer3|chr17 (18223022-18223158) | |
| 224-355, gnl|dasNov1|scaffold_5177 (2262-2422) | |
| 224-355, gnl|echTel1|scaffold_317761 (513-354) | |
| 224-355, gnl|fr1|chrUn (139312241-139312095) | |
| 224-355, gnl|hg17|chr20 (25238073-25238238) | |
| 224-355, gnl|Hg17|chr20 (25238213-25238082) | |
| 224-355, gnl|loxAfr1|scaffold_32701 (9544-9696) | |
| 224-355, gnl|mm7|chr2 (150580568-150580722) | |
| 224-355, gnl|Mm7|chr2 (150580708-150580577) | |
| 224-355, gnl|oryCun1|scaffold_206084 (56165-56329) | |
| 224-355, gnl|panTro1|chr21 (25629978-25630143) | |
| 224-355, gnl|rheMac2|chr10 (58512790-58512955) | |
| 224-355, gnl|rn3|chr3 (141381835-141381989) | |
| 224-355, gnl|tetNig1|chr10 (11260172-11260317) | |
| 224-355, gnl|xenTro1|scaffold_911 (393735-393881) | |
| 634-764, gnl|bosTau2|chr13 (27958576-27958706) | |
| 634-764, gnl|canFam2|chr23 (4497933-4498097) | |
| 634-764, gnl|danRer3|chr17 (18216696-18216845) | |
| 634-764, gnl|dasNov1|scaffold_23671 (45359-45546) | |
| 634-764, gnl|echTel1|scaffold_157703 (1103-934) | |
| 634-764, gnl|fr1|chrUn (139313637-139313468) | |
| 634-764, gnl|galGal2|chr3 (4075041-4075198) | |
| 634-764, gnl|hg17|chr20 (25230844-25231021) | |
| 634-764, gnl|Hg17|chr20 (25230984-25230854) | |
| 634-764, gnl|loxAfr1|scaffold_31912 (14539-14708) | |
| 634-764, gnl|mm7|chr2 (150575125-150575297) | |
| 634-764, gnl|Mm7|chr2 (150575265-150575135) | |
| 634-764, gnl|monDom2|scaffold_1 (62563196-62563367) | |
| 634-764, gnl|panTro1|chr21 (25622755-25622924) | |
| 634-764, gnl|rheMac2|chr10 (58505167-58505346) | |
| 634-764, gnl|rn3|chr3 (141376231-141376403) | |
| 634-764, gnl|tetNig1|chr17 (7736504-7736363) | |
| 634-764, gnl|xenTro1|scaffold_911 (389117-389265) | |
| 799-1378, gnl|bosTau2|chr13 (27959700-27960282) | |
| 799-1378, gnl|canFam2|chr23 (4496498-4496917) | |
| 799-1378, gnl|dasNov1|scaffold_23671 (43083-43557) | |
| 799-1378, gnl|echTel1|scaffold_157703 (2744-2227) | |
| 799-1378, gnl|hg17|chr20 (25228851-25229346) | |
| 799-1378, gnl|Hg17|chr20 (25229464-25228850) | |
| 799-1378, gnl|loxAfr1|scaffold_31912 (12556-13076) | |
| 799-1378, gnl|mm7|chr2 (150573373-150573828) | |
| 799-1378, gnl|Mm7|chr2 (150573943-150573372) | |
| 799-1378, gnl|monDom2|scaffold_1 (62561768-62562344) | |
| 799-1378, gnl|oryCun1|scaffold_206084 (48182-48573) | |
| 799-1378, gnl|panTro1|chr21 (25620773-25621268) | |
| 799-1378, gnl|rheMac2|chr10 (58503155-58503652) | |
| 799-1378, gnl|rn3|chr3 (141374464-141374924) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| hyp (0.42851) | |
| cbr (0.383926) | |
| ebs (0.354904) | |
| fhi (0.339155) | |
| nco (0.323468) | |
| csp (0.322373) | |
| mas (0.210305) | |
| fcc (0.197785) | |
| cje (0.165235) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| pla (0.133672) | |
| ute (0.132784) | |
| cov (0.132153) | |
| eep (0.122564) | |
| eru (0.120048) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hyp (0.42851) | |
| cbr (0.383926) | |
| ebs (0.354904) | |
| fhi (0.339155) | |
| nco (0.323468) | |
| csp (0.322373) | |
| mas (0.210305) | |
| fcc (0.197785) | |
| cje (0.165235) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| pla (0.133672) | |
| ute (0.132784) | |
| cov (0.132153) | |
| eep (0.122564) | |
| eru (0.120048) |