Ss1.1-Pig4-TMW8064E06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCCAAACCTGGAGAAGGTCATCTAGATGCACTCCTGAGGGGTTTGGTTCTGGGCAAACT AGGAAAAGCAGGGCATAAGGCAACATTAGAAGAAGCCCGTCGTCGGTTTAAGGACCACGT GGAAGGGAAACAGATTCTCTCGGCTGATCTGAGGAGTCCGGTCTATCTCACTGTTTTGAA GCACGGTGATGGCACTACCTTAGATATTATGCTGAAGCTTCACAAACAAGCAGACATGCA GGAAGAGAAAAACCGAATTGAAAGAGTCCTTGGGGCTACTCTTTCACCTGAGTTGATTCA AAAAGTCCTCACGTTTGCACTTTCGGAAGAGGTACGTCCGCAGGATACTGTCTCGGTAAT TGGTGGAGTGGCTGGAGGCAGCAAGCATGGAAGGAAGGCTGCTTGGAAGTTCATAAAGGA CAACTGGGAAGAACTTTATAATCGATACCAGGGTGGATTCTTAATATCCAGACTAATAAA GCTATCAGTTGAGGGATTTGCAGTTGATAAGATGGCTGGAGAAGTTAAGGCTTTCTTCGA GAGTCACCCAGCTCCTTCAGCTGAGCGCACCATCCAGCAGTGTTGTGAAAATATCCTGCT GAATGCTGCTTGGCTAAAGCGTGATGCTGAGAGCATCCACCAGTACCTCCTTCAGCGAAA GGCCTCGCCACCCACAGCATGAACCTGGAGCGTGCCACCACTATGGTTCTGCTGCTTCAT GCAGGGATAAGGTGGAGCGACCGAACAGCTGATTTACATGCCAAGAATTTGGAGTCTTCT GTCAAGCCAGTGGGGGTTGGACAATGAATGTAGTTAACTGATTCCTGCTCACACTCCAGA ATAAAATTCTATTAAAAAAAGGAAAATCAGCAATTCAGCAAAAAAAATAAAAAATGAAAA TGTAAATATGATAGTAATAAAATAGAGCATAACGAAACTGTGAAACTTCCTGAAGCCTTG TCAGTGGTTAAAAGTATTTAACACTCTCCTGTTAATGACAGATGTTCTGTTTTTATAACC TACCAAAAGGAAACTAGAGGCTTCTGGGTGAAGAGGATTTTTGTGAAGTGGGTTCTGCAA GCAGCCTACAAGCCAAGGGTCCATCGCTGGGAATGGTTATACATGAAAGACTGATAGCTG GTATAACGTAGTCTGTGCATAATCCCAGGAGGGGTTTTGTGTGCGTGTGCGTGTGCGTGT GTGTGTTTTGGCATGGGGATTGATCAGGAAGATATATTTTCCTGTATAACTTCAGTCTGA ACCACGGATTGTAGTTTTCCTCCTTGCCTTCCCTTCTGTGTGACCCCTTGGCAAAAAAGA AAAGTTAAAAAAAACACAAAAACTTATCCTGGTCTGGGTTTTTTCCTCCCTTTAGTTCCA TCCCCAATCCCCCCACCCTGGTGTCCTTCTTAAAGATAAAGAATAATAAGGAAACATCTT TTATAGCCACATTAAATAAGAGAAACTGATATACATTTTTTTTCTTTTTTTTTTTAAGAT GACTTTTAAGAACCCTGAAATGCATATAGGTGAGACAATAGAAATGAAAGGCTTTCAGCC AGGCCTTTCTGACTTAACTCTGCTGAAAATTGTTTTAGTTGTCTGACAGGCCAACTGTTG AACCCTTCTATGACAGTATCAACATTGGCTTCTGGTTCATTCTGGGCATGTAAGAAGTCA GGGCTTATACATTAATGGTAACTGGCTAAAAAAACAACAAAGACTATACGCCTGTGTGTG CCACTCTGCTTCCACAGTGTATCCTATTAACAAGCCTCACCTACCTAATCCAGTGAGTTT TAACTCTAAATCTCATTCCTTTCCCTCTCTCTCAAACTTTTTTTTCCCATTTCTTTTTCT TTAAAAAAAAGTATTTTTGTGTGTTATTAACAGGAATTCATATTTGGTGTGGCTTAACTG TATTTCAGAAGGTCATCAGATTGTGAGACTGCTTCCATGAAACATTTTTGTGCTATTGTT TTAAGAAAATAATAATTAAAAAACAGTTGGCGTTAATAAAAATGTCAATGTAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCCAAACCTGGAGAAGGTCATCTAGATGCACTCCTGAGGGGTTTGGTTCTGGGCAAACT AGGAAAAGCAGGGCATAAGGCAACATTAGAAGAAGCCCGTCGTCGGTTTAAGGACCACGT GGAAGGGAAACAGATTCTCTCGGCTGATCTGAGGAGTCCGGTCTATCTCACTGTTTTGAA GCACGGTGATGGCACTACCTTAGATATTATGCTGAAGCTTCACAAACAAGCAGACATGCA GGAAGAGAAAAACCGAATTGAAAGAGTCCTTGGGGCTACTCTTTCACCTGAGTTGATTCA AAAAGTCCTCACGTTTGCACTTTCGGAAGAGGTACGTCCGCAGGATACTGTCTCGGTAAT TGGTGGAGTGGCTGGAGGCAGCAAGCATGGAAGGAAGGCTGCTTGGAAGTTCATAAAGGA CAACTGGGAAGAACTTTATAATCGATACCAGGGTGGATTCTTAATATCCAGACTAATAAA GCTATCAGTTGAGGGATTTGCAGTTGATAAGATGGCTGGAGAAGTTAAGGCTTTCTTCGA GAGTCACCCAGCTCCTTCAGCTGAGCGCACCATCCAGCAGTGTTGTGAAAATATCCTGCT GAATGCTGCTTGGCTAAAGCGTGATGCTGAGAGCATCCACCAGTACCTCCTTCAGCGAAA GGCCTCGCCACCCACAGCATGAACCTGGAGCGTGCCACCACTATGGTTCTGCTGCTTCAT GCAGGGATAAGGTGGAGCGACCGAACAGCTGATTTACATGCCAAGAATTTGGAGTCTTCT GTCAAGCCAGTGGGGGTTGGACAATGAATGTAGTTAACTGATTCCTGCTCACACTCCAGA ATAAAATTCTATTAAAAAAAGGAAAATCAGCAATTCAGCAAAAAAAATAAAAAATGAAAA TGTAAATATGATAGTAATAAAATAGAGCATAACGAAACTGTGAAACTTCCTGAAGCCTTG TCAGTGGTTAAAAGTATTTAACACTCTCCTGTTAATGACAGATGTTCTGTTTTTATAACC TACCAAAAGGAAACTAGAGGCTTCTGGGTGAAGAGGATTTTTGTGAAGTGGGTTCTGCAA GCAGCCTACAAGCCAAGGGTCCATCGCTGGGAATGGTTATACATGAAAGACTGATAGCTG GTATAACGTAGTCTGTGCATAATCCCAGGAGGGGTTTTGTGTGCGTGTGCGTGTGCGTGT GTGTGTTTTGGCATGGGGATTGATCAGGAAGATATATTTTCCTGTATAACTTCAGTCTGA ACCACGGATTGTAGTTTTCCTCCTTGCCTTCCCTTCTGTGTGACCCCTTGGCAAAAAAGA AAAGTTAAAAAAAACACAAAAACTTATCCTGGTCTGGGTTTTTTCCTCCCTTTAGTTCCA TCCCCAATCCCCCCACCCTGGTGTCCTTCTTAAAGATAAAGAATAATAAGGAAACATCTT TTATAGCCACATTAAATAAGAGAAACTGATATACATTTTTTTTCTTTTTTTTTTTAAGAT GACTTTTAAGAACCCTGAAATGCATATAGGTGAGACAATAGAAATGAAAGGCTTTCAGCC AGGCCTTTCTGACTTAACTCTGCTGAAAATTGTTTTAGTTGTCTGACAGGCCAACTGTTG AACCCTTCTATGACAGTATCAACATTGGCTTCTGGTTCATTCTGGGCATGTAAGAAGTCA GGGCTTATACATTAATGGTAACTGGCTAAAAAAACAACAAAGACTATACGCCTGTGTGTG CCACTCTGCTTCCACAGTGTATCCTATTAACAAGCCTCACCTACCTAATCCAGTGAGTTT TAACTCTAAATCTCATTCCTTTCCCTCTCTCTCAAACTTTTTTTTCCCATTTCTTTTTCT TTAAAAAAAAGTATTTTTGTGTGTTATTAACAGGAATTCATATTTGGTGTGGCTTAACTG TATTTCAGAAGGTCATCAGATTGTGAGACTGCTTCCATGAAACATTTTTGTGCTATTGTT TTAAGAAAATAATAATTAAAAAACAGTTGGCGTTAATAAAAATGTCAATGTAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 528-686, - strand, RNAz p=0.898208 | |
| 946-1060, - strand, RNAz p=0.866638 | |
| 1169-1319, - strand, RNAz p=0.998867 | |
| 1552-1727, + strand, RNAz p=0.80327 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 528-686, - strand, RNAz p=0.898208 | |
| 946-1060, - strand, RNAz p=0.866638 | |
| 1169-1319, - strand, RNAz p=0.998867 | |
| 1552-1727, + strand, RNAz p=0.80327 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_006310, + |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 16-162, gnl|bosTau2|chr19 (32640203-32640057) | |
| 16-162, gnl|canFam2|chr9 (27288684-27288778) | |
| 16-162, gnl|danRer3|chr11 (13494584-13494678) | |
| 16-162, gnl|dasNov1|scaffold_226346 (1316-1410) | |
| 16-162, gnl|echTel1|scaffold_324326 (88392-88486) | |
| 16-162, gnl|fr1|chrUn (150301416-150301322) | |
| 16-162, gnl|galGal2|chrUn (137113574-137113480) | |
| 16-162, gnl|hg17|chr17 (43044824-43044918) | |
| 16-162, gnl|Hg17|chr17 (43044823-43044969) | |
| 16-162, gnl|mm7|chr11 (97327692-97327598) | |
| 16-162, gnl|Mm7|chr11 (97327691-97327545) | |
| 16-162, gnl|monDom2|scaffold_18 (47024833-47024739) | |
| 16-162, gnl|oryCun1|scaffold_113666 (561-655) | |
| 16-162, gnl|panTro1|chr19_random (41916962-41917056) | |
| 16-162, gnl|rheMac2|chr16 (31818311-31818405) | |
| 16-162, gnl|rn3|chr10 (85955245-85955151) | |
| 16-162, gnl|tetNig1|chr18 (10040696-10040602) | |
| 16-162, gnl|xenTro1|scaffold_334 (733851-733757) | |
| 321-484, gnl|bosTau2|chr19 (32635765-32635602) | |
| 321-484, gnl|Hg17|chr17 (43051369-43051532) | |
| 321-484, gnl|Mm7|chr11 (97322236-97322068) | |
| 528-1995, gnl|bosTau2|chr19 (32632437-32631004) | |
| 528-1995, gnl|Hg17|chr17 (43054131-43055598) | |
| 528-1995, gnl|Mm7|chr11 (97316309-97314920) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 16-162, gnl|bosTau2|chr19 (32640203-32640057) | |
| 16-162, gnl|canFam2|chr9 (27288684-27288778) | |
| 16-162, gnl|danRer3|chr11 (13494584-13494678) | |
| 16-162, gnl|dasNov1|scaffold_226346 (1316-1410) | |
| 16-162, gnl|echTel1|scaffold_324326 (88392-88486) | |
| 16-162, gnl|fr1|chrUn (150301416-150301322) | |
| 16-162, gnl|galGal2|chrUn (137113574-137113480) | |
| 16-162, gnl|hg17|chr17 (43044824-43044918) | |
| 16-162, gnl|Hg17|chr17 (43044823-43044969) | |
| 16-162, gnl|mm7|chr11 (97327692-97327598) | |
| 16-162, gnl|Mm7|chr11 (97327691-97327545) | |
| 16-162, gnl|monDom2|scaffold_18 (47024833-47024739) | |
| 16-162, gnl|oryCun1|scaffold_113666 (561-655) | |
| 16-162, gnl|panTro1|chr19_random (41916962-41917056) | |
| 16-162, gnl|rheMac2|chr16 (31818311-31818405) | |
| 16-162, gnl|rn3|chr10 (85955245-85955151) | |
| 16-162, gnl|tetNig1|chr18 (10040696-10040602) | |
| 16-162, gnl|xenTro1|scaffold_334 (733851-733757) | |
| 321-484, gnl|bosTau2|chr19 (32635765-32635602) | |
| 321-484, gnl|Hg17|chr17 (43051369-43051532) | |
| 321-484, gnl|Mm7|chr11 (97322236-97322068) | |
| 528-1995, gnl|bosTau2|chr19 (32632437-32631004) | |
| 528-1995, gnl|Hg17|chr17 (43054131-43055598) | |
| 528-1995, gnl|Mm7|chr11 (97316309-97314920) |
| Expressed library(ies): 31 entry(ies) | More info |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
| clu (0.837521) | |
| fce (0.543183) | |
| ova (0.516529) | |
| amn (0.417711) | |
| duo (0.345602) | |
| ecc (0.345105) | |
| spl (0.286369) | |
| ste (0.270416) | |
| sug (0.254582) | |
| pgl (0.236967) | |
| spc (0.226732) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| col (0.195008) | |
| ldo (0.194005) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| eye (0.170503) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| nmm (0.132802) | |
| ret (0.128733) | |
| bla (0.124347) | |
| tra (0.123092) | |
| eep (0.122564) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| eje (0.0988338) |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.837521) | |
| fce (0.543183) | |
| ova (0.516529) | |
| amn (0.417711) | |
| duo (0.345602) | |
| ecc (0.345105) | |
| spl (0.286369) | |
| ste (0.270416) | |
| sug (0.254582) | |
| pgl (0.236967) | |
| spc (0.226732) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| col (0.195008) | |
| ldo (0.194005) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| eye (0.170503) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| nmm (0.132802) | |
| ret (0.128733) | |
| bla (0.124347) | |
| tra (0.123092) | |
| eep (0.122564) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| eje (0.0988338) |