Non-Coding RNA Search

Ss1.1-Pig4-TMW8064E11.3

Sequence:


               
               AAAAGGCTGAAAAGTGGATAAAAAGCCTGTGTGGATCATGGTATGTTATTTCACTTCTAG
GACAGAAAAGCAAACTATTGTAGAAGTTTTGAGTAGATATGAGAATTTCCTAGTTAGAAA
ATAAAGAGTTTGAGGATTGTTGGAACTCTAAAAGTTATTGTTTTATGATGGACAATAAAG
TTAACATGTGAGGGTTTAGTATGTGTGTGCCTGGTAGGGTGACCAACCATCTCTGTTTGG
GATTGTAAGGTTTCCTGAGACATGAAATTTCAGTGCTAAAACTGGAACAATCCCAGGCAC
ACTGGGATGGTGGATCACCACAGTGCCAGATTCTGTGCCATATGTTTCACATGTTCTTAT
TGAATACTCGCAACAATCCATGATAGATAAAATATTCTAGGTCATATAGCTGATAGGTGA
TAGAGCTGAGACATGAACCCAGATCTGTCTGCAGAGCCAGAGCAATTAGCTCGACTCTTG
TACTGACTCCTGAAAAGGGTGGTGGAGCTAAACCCTTTCCATGTGTTGGGAGTTGAAGCC
ACAGCATCAGATGTTGAGCTGAAGAAGGCCTATAGGCAGCTGGCAGTGATGGTTCATCCT
GACAAAAATCGTCATCCCCGGGCTGAGGAGGCCTTCAAGGTTTTGAGGGCAGCTTGGGAC
ATTGTCAGCAACCCTGAAAGACGGAAGGAATATGAGATGAAACGAATGGCAGAGAATGAG
CTGAGCCGGTCAGTGAATGAGTTTCTGTCCAAGCTGCAGGATGACCTTAAAGAGGCAATG
AATACTATGATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAA
CCTAAGAATGCCAGATACTGTGCTGAGTGTAAGAGGCTGCATCCCGCTGAGGAAGGAGAC
TTTTGGGCAGAGTCAAGCATGTTTGGCCTCAAGATCACCTACTTTGCACTGATGGATGGA
AAGGTGTATGACATCACAGAGTGGGCTGGATGCCAGCGTGTGGGGATATCCCCAGATACT
CACAGAGTCCCCTATCACATCTCATTTGGTTCGAGGATGCCAGGCACCAGTGGGCGTCAG
AGAGCTACCCCTGATGCCCCTCCTGCTGACCTTCAAGATTTCCTGAGCCGGATCTTTCAA
GTACCCCCAGGCCAGATGTCCAATGGGAACTTCTTTGCAGGGCCTCAGCCAGGCTCTGGG
GCCACTGCAGCCTCCAAGCCCAACAGCACAGTACCCAAGGGAGAAGCTAAACCGAAGCGG
CGGAAGAAAGTGAGGAGGCCCTTCCAACGTTGACACCCTTCTCTTTCCTCAAATCAATGT
CAGGGAGTCAAAAGGGCTGTGTACAGCACCGGATGGAGTTTTGATTTGTTTATTTTTAAA
TATTTAAAAAAGGGAAAATTTTAAGCTCAAATTGTTCACTCAGTAATGGTAGGAAGCCCT
GGAACCACTCTCCCTCCTCCACCAGCACCCAGGAACTGAATCTTGTCTTCTGACAATACC
AAAGAAATAGGGGGCGGCTAGAGCAGAGAGCCTAGGGCCCGGACCTGGGCGGGACAGTAT
CTCCCATAGTAGTGTGGGAACTGGGTATTTCCCTGGAGTCTGTATGCCTTTGTCTTGTCT
CTGGCTTCTACAGCAGACGACACTTTCCCCTCTTTTTTTTTAAGCTATGGAGTCTATCTT
ATTTCTGGATCCATTTCAGGAGGGAGCCCACTCTTTGCCCCAGTATACTAGTAAAAAGAA
CAAGAAAGCATGTAACCCTGATTAGAGGAGATAGAGTTCAGAGAGTGGGGATGGTCACTG
TGTGGGAAATCACCCAACTTTGTGCTTGTTGTTGCAGGAATGGCCAAAACTAATAATTTT
TAAAAAGCAGATTCATGCCCTCTTCCCTTGGGTGAGGGGAAAGGATAAAGGGGCTCCCAG
CAGCCCCCATATGATCCAAGGGTTTGTATTTTTTTAAGTTTGTTCATATTTGTATGTACA
TATCTATTTAAAGCCAGGGGATTATCTTTCTATAAATACATAACTGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAGGCTGAAAAGTGGATAAAAAGCCTGTGTGGATCATGGTATGTTATTTCACTTCTAG
GACAGAAAAGCAAACTATTGTAGAAGTTTTGAGTAGATATGAGAATTTCCTAGTTAGAAA
ATAAAGAGTTTGAGGATTGTTGGAACTCTAAAAGTTATTGTTTTATGATGGACAATAAAG
TTAACATGTGAGGGTTTAGTATGTGTGTGCCTGGTAGGGTGACCAACCATCTCTGTTTGG
GATTGTAAGGTTTCCTGAGACATGAAATTTCAGTGCTAAAACTGGAACAATCCCAGGCAC
ACTGGGATGGTGGATCACCACAGTGCCAGATTCTGTGCCATATGTTTCACATGTTCTTAT
TGAATACTCGCAACAATCCATGATAGATAAAATATTCTAGGTCATATAGCTGATAGGTGA
TAGAGCTGAGACATGAACCCAGATCTGTCTGCAGAGCCAGAGCAATTAGCTCGACTCTTG
TACTGACTCCTGAAAAGGGTGGTGGAGCTAAACCCTTTCCATGTGTTGGGAGTTGAAGCC
ACAGCATCAGATGTTGAGCTGAAGAAGGCCTATAGGCAGCTGGCAGTGATGGTTCATCCT
GACAAAAATCGTCATCCCCGGGCTGAGGAGGCCTTCAAGGTTTTGAGGGCAGCTTGGGAC
ATTGTCAGCAACCCTGAAAGACGGAAGGAATATGAGATGAAACGAATGGCAGAGAATGAG
CTGAGCCGGTCAGTGAATGAGTTTCTGTCCAAGCTGCAGGATGACCTTAAAGAGGCAATG
AATACTATGATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAA
CCTAAGAATGCCAGATACTGTGCTGAGTGTAAGAGGCTGCATCCCGCTGAGGAAGGAGAC
TTTTGGGCAGAGTCAAGCATGTTTGGCCTCAAGATCACCTACTTTGCACTGATGGATGGA
AAGGTGTATGACATCACAGAGTGGGCTGGATGCCAGCGTGTGGGGATATCCCCAGATACT
CACAGAGTCCCCTATCACATCTCATTTGGTTCGAGGATGCCAGGCACCAGTGGGCGTCAG
AGAGCTACCCCTGATGCCCCTCCTGCTGACCTTCAAGATTTCCTGAGCCGGATCTTTCAA
GTACCCCCAGGCCAGATGTCCAATGGGAACTTCTTTGCAGGGCCTCAGCCAGGCTCTGGG
GCCACTGCAGCCTCCAAGCCCAACAGCACAGTACCCAAGGGAGAAGCTAAACCGAAGCGG
CGGAAGAAAGTGAGGAGGCCCTTCCAACGTTGACACCCTTCTCTTTCCTCAAATCAATGT
CAGGGAGTCAAAAGGGCTGTGTACAGCACCGGATGGAGTTTTGATTTGTTTATTTTTAAA
TATTTAAAAAAGGGAAAATTTTAAGCTCAAATTGTTCACTCAGTAATGGTAGGAAGCCCT
GGAACCACTCTCCCTCCTCCACCAGCACCCAGGAACTGAATCTTGTCTTCTGACAATACC
AAAGAAATAGGGGGCGGCTAGAGCAGAGAGCCTAGGGCCCGGACCTGGGCGGGACAGTAT
CTCCCATAGTAGTGTGGGAACTGGGTATTTCCCTGGAGTCTGTATGCCTTTGTCTTGTCT
CTGGCTTCTACAGCAGACGACACTTTCCCCTCTTTTTTTTTAAGCTATGGAGTCTATCTT
ATTTCTGGATCCATTTCAGGAGGGAGCCCACTCTTTGCCCCAGTATACTAGTAAAAAGAA
CAAGAAAGCATGTAACCCTGATTAGAGGAGATAGAGTTCAGAGAGTGGGGATGGTCACTG
TGTGGGAAATCACCCAACTTTGTGCTTGTTGTTGCAGGAATGGCCAAAACTAATAATTTT
TAAAAAGCAGATTCATGCCCTCTTCCCTTGGGTGAGGGGAAAGGATAAAGGGGCTCCCAG
CAGCCCCCATATGATCCAAGGGTTTGTATTTTTTTAAGTTTGTTCATATTTGTATGTACA
TATCTATTTAAAGCCAGGGGATTATCTTTCTATAAATACATAACTGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|14194057|gb|AAK56241.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|14194057|gb|AAK56241.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               260-2028, - strand, RNAz p=0.97946
               

               
               438-551, - strand, RNAz p=0.887225
               

               
               1530-1725, - strand, RNAz p=0.999986

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               260-2028, - strand, RNAz p=0.97946
               

               
               438-551, - strand, RNAz p=0.887225
               

               
               1530-1725, - strand, RNAz p=0.999986

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               1-108, gnl|bosTau2|chr5 (35049511-35049617)
               

               
               1-108, gnl|Hg17|chr12 (54504448-54504347)
               

               
               1-108, gnl|Mm7|chr10 (128314555-128314658)
               


               
               164-702, gnl|bosTau2|chr5 (35049635-35050182)
               

               
               164-702, gnl|Hg17|chr12 (54504303-54503449)
               


               
               817-979, gnl|bosTau2|chr5 (35050851-35051013)
               

               
               817-979, gnl|Hg17|chr12 (54502785-54502623)
               

               
               817-979, gnl|Mm7|chr10 (128318478-128318640)
               


               
               1081-2028, gnl|bosTau2|chr5 (35051407-35052352)
               

               
               1081-2028, gnl|Hg17|chr12 (54502240-54501038)
               

               
               1081-2028, gnl|Mm7|chr10 (128318967-128319915)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-108, gnl|bosTau2|chr5 (35049511-35049617)
               

               
               1-108, gnl|Hg17|chr12 (54504448-54504347)
               

               
               1-108, gnl|Mm7|chr10 (128314555-128314658)
               


               
               164-702, gnl|bosTau2|chr5 (35049635-35050182)
               

               
               164-702, gnl|Hg17|chr12 (54504303-54503449)
               


               
               817-979, gnl|bosTau2|chr5 (35050851-35051013)
               

               
               817-979, gnl|Hg17|chr12 (54502785-54502623)
               

               
               817-979, gnl|Mm7|chr10 (128318478-128318640)
               


               
               1081-2028, gnl|bosTau2|chr5 (35051407-35052352)
               

               
               1081-2028, gnl|Hg17|chr12 (54502240-54501038)
               

               
               1081-2028, gnl|Mm7|chr10 (128318967-128319915)

Expressed library(ies): 18 entry(ies)

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Expressed library(ies): 18 entry(ies)

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               amn (0.417711)
               

               
               fcc (0.39557)
               

               
               elu (0.385356)
               

               
               eru (0.240096)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               eje (0.0988338)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               fcc (0.39557)
               

               
               elu (0.385356)
               

               
               eru (0.240096)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               eje (0.0988338)

	260-2028, - strand, RNAz p=0.97946
	438-551, - strand, RNAz p=0.887225
	1530-1725, - strand, RNAz p=0.999986

	1-108, gnl\|bosTau2\|chr5 (35049511-35049617)
	1-108, gnl\|Hg17\|chr12 (54504448-54504347)
	1-108, gnl\|Mm7\|chr10 (128314555-128314658)

	164-702, gnl\|bosTau2\|chr5 (35049635-35050182)
	164-702, gnl\|Hg17\|chr12 (54504303-54503449)

	817-979, gnl\|bosTau2\|chr5 (35050851-35051013)
	817-979, gnl\|Hg17\|chr12 (54502785-54502623)
	817-979, gnl\|Mm7\|chr10 (128318478-128318640)

	1081-2028, gnl\|bosTau2\|chr5 (35051407-35052352)
	1081-2028, gnl\|Hg17\|chr12 (54502240-54501038)
	1081-2028, gnl\|Mm7\|chr10 (128318967-128319915)

	amn (0.417711)
	fcc (0.39557)
	elu (0.385356)
	eru (0.240096)
	col (0.195008)
	nlu (0.191681)
	eye (0.170503)
	fhi (0.169578)
	cje (0.165235)
	nco (0.161734)
	csp (0.161186)
	spl (0.143184)
	lnt (0.142308)
	pla (0.133672)
	ute (0.132784)
	cly (0.120642)
	clu (0.119646)
	eje (0.0988338)