Ss1.1-Pig4-TMW8064E12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCTCTAAAGAAACAGATCTTGTAAATTTTGATGACATAGCTTCATCAGAAAACTTGCTA CATCTCACTGCAAATAGACCGAAGATGCCTGGAAGAAGATTGCCTGGCCGCTTCAATGGT GGACATTCTCCAACTCAAAGCCCAGAAAAGACTTTGAAGTTACCAAAAGAAGATGATAGT GCCAAAGTAAAGCCATCTGAATTTAAAAAGGATTCATGCTTCTCTCCAAAGCCATCTGCG TACCTTTCAACACCTTCAAGTGCTTCCAAATCAAATACGGCCGCTTTACTAACTCCATTA GAAATCACAACCAAAGTAGAAACAGATGATGGGAAAAAGAATTCCCTGGATGAACTTAGA GCTCAGATTGTTGAATTGTTGTGTGCTGTGGAAACACTGAAAAAGGATCATGGGAAAGAA CTGGAAAAACTACGAAAAGATTTAGAAGAAGAGAAGGCAATGAGAAGTAATCTAGAGGTG GAAGTAGAGAAGCTGAAAAAAGCAGTCCTGTCTTGAAGTGTTCTCAGTGCTCCAGGGATT CAGAAGCAACACTATGAACTTCAACTGACTTGTTACCTAAAAATAACGAATACTGATGTC ATGATAAAGAAATATGAGTATATGAATTATTATAGCTGTAGAAAAATGTAGGGGAGGGTA AATTTTTTATATATATTTTGTTTTGCCAATATGAAAAAAAGAGGCCTTATTTCTTATGTG CTGGGATTGCAAACTTTTTGTTTAGTTTGCTTGAAAATACTACTGAATCTGTATAAAGGA AAAAAGTTCACAATAGTTGTTTTTTTTTTATTGAACTTGTAGTATTATTTTTAAAGAGAT CTATACTATAAATATGGTGATATCTTTACAAATAATCTGTAAAATATACTATTTGAGAGG GACAGGTTAGCTTTATGGTAGCGGTAGTCACTACTTTTCCCCTAATACATAAGGGATATA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCTCTAAAGAAACAGATCTTGTAAATTTTGATGACATAGCTTCATCAGAAAACTTGCTA CATCTCACTGCAAATAGACCGAAGATGCCTGGAAGAAGATTGCCTGGCCGCTTCAATGGT GGACATTCTCCAACTCAAAGCCCAGAAAAGACTTTGAAGTTACCAAAAGAAGATGATAGT GCCAAAGTAAAGCCATCTGAATTTAAAAAGGATTCATGCTTCTCTCCAAAGCCATCTGCG TACCTTTCAACACCTTCAAGTGCTTCCAAATCAAATACGGCCGCTTTACTAACTCCATTA GAAATCACAACCAAAGTAGAAACAGATGATGGGAAAAAGAATTCCCTGGATGAACTTAGA GCTCAGATTGTTGAATTGTTGTGTGCTGTGGAAACACTGAAAAAGGATCATGGGAAAGAA CTGGAAAAACTACGAAAAGATTTAGAAGAAGAGAAGGCAATGAGAAGTAATCTAGAGGTG GAAGTAGAGAAGCTGAAAAAAGCAGTCCTGTCTTGAAGTGTTCTCAGTGCTCCAGGGATT CAGAAGCAACACTATGAACTTCAACTGACTTGTTACCTAAAAATAACGAATACTGATGTC ATGATAAAGAAATATGAGTATATGAATTATTATAGCTGTAGAAAAATGTAGGGGAGGGTA AATTTTTTATATATATTTTGTTTTGCCAATATGAAAAAAAGAGGCCTTATTTCTTATGTG CTGGGATTGCAAACTTTTTGTTTAGTTTGCTTGAAAATACTACTGAATCTGTATAAAGGA AAAAAGTTCACAATAGTTGTTTTTTTTTTATTGAACTTGTAGTATTATTTTTAAAGAGAT CTATACTATAAATATGGTGATATCTTTACAAATAATCTGTAAAATATACTATTTGAGAGG GACAGGTTAGCTTTATGGTAGCGGTAGTCACTACTTTTCCCCTAATACATAAGGGATATA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 298-418, + strand, RNAz p=0.920125 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 298-418, + strand, RNAz p=0.920125 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 14-129, gnl|bosTau2|chr23 (40593168-40593283) | |
| 14-129, gnl|canFam2|chr12 (18673384-18673535) | |
| 14-129, gnl|danRer3|chr20 (30932109-30931961) | |
| 14-129, gnl|dasNov1|scaffold_21164 (39786-39636) | |
| 14-129, gnl|echTel1|scaffold_308931 (50953-50812) | |
| 14-129, gnl|galGal2|chr3 (107890994-107891139) | |
| 14-129, gnl|hg17|chr6 (47681841-47681991) | |
| 14-129, gnl|Hg17|chr6 (47681857-47681972) | |
| 14-129, gnl|loxAfr1|scaffold_1366 (60222-60372) | |
| 14-129, gnl|mm7|chr17 (40927688-40927539) | |
| 14-129, gnl|Mm7|chr17 (40927671-40927556) | |
| 14-129, gnl|monDom2|scaffold_0 (191852155-191852006) | |
| 14-129, gnl|oryCun1|scaffold_92199 (4699-4841) | |
| 14-129, gnl|panTro1|chr5_random (28988735-28988885) | |
| 14-129, gnl|rheMac2|chr4 (47417813-47417963) | |
| 14-129, gnl|rn3|chr9 (13873066-13873216) | |
| 14-129, gnl|tetNig1|chr14 (760616-760481) | |
| 14-129, gnl|xenTro1|scaffold_698 (414103-414242) | |
| 230-418, gnl|bosTau2|chr23 (40595121-40595297) | |
| 230-418, gnl|canFam2|chr12 (18675615-18675754) | |
| 230-418, gnl|danRer3|chr20 (30922634-30922498) | |
| 230-418, gnl|dasNov1|scaffold_21164 (37840-37698) | |
| 230-418, gnl|echTel1|scaffold_308931 (49055-48917) | |
| 230-418, gnl|galGal2|chr3 (107892565-107892701) | |
| 230-418, gnl|hg17|chr6 (47684817-47684956) | |
| 230-418, gnl|Hg17|chr6 (47684816-47685004) | |
| 230-418, gnl|loxAfr1|scaffold_1366 (62315-62457) | |
| 230-418, gnl|mm7|chr17 (40924163-40924030) | |
| 230-418, gnl|Mm7|chr17 (40924162-40923980) | |
| 230-418, gnl|monDom2|scaffold_0 (191844531-191844401) | |
| 230-418, gnl|oryCun1|scaffold_214661 (116492-116359) | |
| 230-418, gnl|panTro1|chr5_random (28991715-28991854) | |
| 230-418, gnl|rheMac2|chr4 (47420768-47420907) | |
| 230-418, gnl|rn3|chr9 (13876426-13876559) | |
| 230-418, gnl|xenTro1|scaffold_698 (415383-415525) | |
| 517-960, gnl|bosTau2|chr23 (40601778-40602236) | |
| 517-960, gnl|Hg17|chr6 (47699936-47700369) | |
| 517-960, gnl|Mm7|chr17 (40915138-40914733) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 14-129, gnl|bosTau2|chr23 (40593168-40593283) | |
| 14-129, gnl|canFam2|chr12 (18673384-18673535) | |
| 14-129, gnl|danRer3|chr20 (30932109-30931961) | |
| 14-129, gnl|dasNov1|scaffold_21164 (39786-39636) | |
| 14-129, gnl|echTel1|scaffold_308931 (50953-50812) | |
| 14-129, gnl|galGal2|chr3 (107890994-107891139) | |
| 14-129, gnl|hg17|chr6 (47681841-47681991) | |
| 14-129, gnl|Hg17|chr6 (47681857-47681972) | |
| 14-129, gnl|loxAfr1|scaffold_1366 (60222-60372) | |
| 14-129, gnl|mm7|chr17 (40927688-40927539) | |
| 14-129, gnl|Mm7|chr17 (40927671-40927556) | |
| 14-129, gnl|monDom2|scaffold_0 (191852155-191852006) | |
| 14-129, gnl|oryCun1|scaffold_92199 (4699-4841) | |
| 14-129, gnl|panTro1|chr5_random (28988735-28988885) | |
| 14-129, gnl|rheMac2|chr4 (47417813-47417963) | |
| 14-129, gnl|rn3|chr9 (13873066-13873216) | |
| 14-129, gnl|tetNig1|chr14 (760616-760481) | |
| 14-129, gnl|xenTro1|scaffold_698 (414103-414242) | |
| 230-418, gnl|bosTau2|chr23 (40595121-40595297) | |
| 230-418, gnl|canFam2|chr12 (18675615-18675754) | |
| 230-418, gnl|danRer3|chr20 (30922634-30922498) | |
| 230-418, gnl|dasNov1|scaffold_21164 (37840-37698) | |
| 230-418, gnl|echTel1|scaffold_308931 (49055-48917) | |
| 230-418, gnl|galGal2|chr3 (107892565-107892701) | |
| 230-418, gnl|hg17|chr6 (47684817-47684956) | |
| 230-418, gnl|Hg17|chr6 (47684816-47685004) | |
| 230-418, gnl|loxAfr1|scaffold_1366 (62315-62457) | |
| 230-418, gnl|mm7|chr17 (40924163-40924030) | |
| 230-418, gnl|Mm7|chr17 (40924162-40923980) | |
| 230-418, gnl|monDom2|scaffold_0 (191844531-191844401) | |
| 230-418, gnl|oryCun1|scaffold_214661 (116492-116359) | |
| 230-418, gnl|panTro1|chr5_random (28991715-28991854) | |
| 230-418, gnl|rheMac2|chr4 (47420768-47420907) | |
| 230-418, gnl|rn3|chr9 (13876426-13876559) | |
| 230-418, gnl|xenTro1|scaffold_698 (415383-415525) | |
| 517-960, gnl|bosTau2|chr23 (40601778-40602236) | |
| 517-960, gnl|Hg17|chr6 (47699936-47700369) | |
| 517-960, gnl|Mm7|chr17 (40915138-40914733) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mcp (0.170648) | |
| kid (0.129735) |