Non-Coding RNA Search

Ss1.1-Pig4-TMW8064E16.3

Sequence:


               
               GCATTGCTCCCTAACCAGCCCCACACTCACTGTCCTGAAATGGATGCTGATGCACAGCCT
CGAGCTCCTGGGATTGATGATATAAAGACTTTGGAGGAAAAGCTGCGGTCTCTCTTCAGC
GAACACAGCTCATCCGGAACACAGCATGCTTCTGTCTCACTGGAGACATCACTAGTGGTG
GAGACCACTGTCACACCAGGCATCCCAACCACTGCTGTTGCACCAGGCAAACTCATGACT
TCCACTACAAGTACTTGCTTACCACCAACCAGTTTGCCATTAGGAACAACTGGTTTGTCA
ATTCTACCCGTGGTCACACCTGGGCAAGTTTCCACGCCGGTGAGCACTATACCAGCAGTG
AAACCTGGAACTGCTCCATCAAAGCCACCTTCAACTAAGCCTCCAGTAAGGTTCTTGTCT
TGCAATAATTTGAAAAATATGACCACCCCCCCCATAAGAATATTGTTATCAACTCAGCCT
TGCAAATTAGAAATGTAGTTACAAAGATGCCTGGCTTGGAGTTCCCATTGTGACTCAGTG
GAAATGAATCTGACTAGCATCCGTGAGAATGCAGGTGTGTCCGTCGTGGCTCCAACAGCA
GCTGTAGAAGCTGGAGCACAGCTTCAAAAGGATGTTTCTCAAGTCACAGAAGGTCCTATC
CCAGCACCTACTTCAGGAACTGGTGTTTTTCAGATGGGCCGATTTCAGGTTTCAGTTGCA
ATGGACGATACCCAGAAAGAGGGTAAAAATAAGTCAGAAGATGTAAAGTCTGTCCATTTT
GAATCCAGTACTTCAGAGTCCTCAGTGCTATCAAGTAGTAGTCCAGAGAGTACCCTGGTA
AAGCCAGAGCCCAATGGGACAGCCATCCATGGCATCTCTTCAGATATGCCTGATAGCGCC
CACAAGACTTCGGCCTCAGAAGCAAAGTCAGAAGCTGGGCAGCCTACCAAGGTTGGGCGT
TTCCAGGTGACAACTACAGCAGACAAAGTAGGTCGTTTCTCTGTTTCAAGAACTGAAGAT
GCGATTGCTGAGGCAAAAAAAGAGGGACCAGTGGCATCTCCTCCTTTTATGGATTTGGAA
CATTCTATTCTTCCTGCTGTGATACCAAAGAAAGAAAAGCCTGAACTGTCAGAGCCTTCA
CATCTGAATGGGCCATCTTCTGACCTGGAGGCCGCCTTCTTAAGTAGGGATGGCGATGAT
GGTTCAGGTAGTCCACACTCCCCACCTCAGCTGTGCTCAAAGAGCCTTCCTATCCAGAGC
CTGAGTCAAAGCCTTAGTAATTCATTCAACTCCTCTTACATGAGCAGTGACAATGAGTCA
GATATTGAAGATGAAGACTTAAAATTAGAGCTGCGACGACTGCGAGAAAAACATCTTAAA
GAGATCCAAGACCTACAGAGTCGCCAGAAGCATGAAATTGAATCTTTGTACACCAGGCTG
GGCAAAGCTCCCCCTGCTGTTATCATCCCCGCAGCCGCCCCTCTTGCAGGGAGAAGAAGG
CGACCCACCAAAAGCAAAGGCAGCAAGTCTAGTCGCAGCAGTTCCTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCATTGCTCCCTAACCAGCCCCACACTCACTGTCCTGAAATGGATGCTGATGCACAGCCT
CGAGCTCCTGGGATTGATGATATAAAGACTTTGGAGGAAAAGCTGCGGTCTCTCTTCAGC
GAACACAGCTCATCCGGAACACAGCATGCTTCTGTCTCACTGGAGACATCACTAGTGGTG
GAGACCACTGTCACACCAGGCATCCCAACCACTGCTGTTGCACCAGGCAAACTCATGACT
TCCACTACAAGTACTTGCTTACCACCAACCAGTTTGCCATTAGGAACAACTGGTTTGTCA
ATTCTACCCGTGGTCACACCTGGGCAAGTTTCCACGCCGGTGAGCACTATACCAGCAGTG
AAACCTGGAACTGCTCCATCAAAGCCACCTTCAACTAAGCCTCCAGTAAGGTTCTTGTCT
TGCAATAATTTGAAAAATATGACCACCCCCCCCATAAGAATATTGTTATCAACTCAGCCT
TGCAAATTAGAAATGTAGTTACAAAGATGCCTGGCTTGGAGTTCCCATTGTGACTCAGTG
GAAATGAATCTGACTAGCATCCGTGAGAATGCAGGTGTGTCCGTCGTGGCTCCAACAGCA
GCTGTAGAAGCTGGAGCACAGCTTCAAAAGGATGTTTCTCAAGTCACAGAAGGTCCTATC
CCAGCACCTACTTCAGGAACTGGTGTTTTTCAGATGGGCCGATTTCAGGTTTCAGTTGCA
ATGGACGATACCCAGAAAGAGGGTAAAAATAAGTCAGAAGATGTAAAGTCTGTCCATTTT
GAATCCAGTACTTCAGAGTCCTCAGTGCTATCAAGTAGTAGTCCAGAGAGTACCCTGGTA
AAGCCAGAGCCCAATGGGACAGCCATCCATGGCATCTCTTCAGATATGCCTGATAGCGCC
CACAAGACTTCGGCCTCAGAAGCAAAGTCAGAAGCTGGGCAGCCTACCAAGGTTGGGCGT
TTCCAGGTGACAACTACAGCAGACAAAGTAGGTCGTTTCTCTGTTTCAAGAACTGAAGAT
GCGATTGCTGAGGCAAAAAAAGAGGGACCAGTGGCATCTCCTCCTTTTATGGATTTGGAA
CATTCTATTCTTCCTGCTGTGATACCAAAGAAAGAAAAGCCTGAACTGTCAGAGCCTTCA
CATCTGAATGGGCCATCTTCTGACCTGGAGGCCGCCTTCTTAAGTAGGGATGGCGATGAT
GGTTCAGGTAGTCCACACTCCCCACCTCAGCTGTGCTCAAAGAGCCTTCCTATCCAGAGC
CTGAGTCAAAGCCTTAGTAATTCATTCAACTCCTCTTACATGAGCAGTGACAATGAGTCA
GATATTGAAGATGAAGACTTAAAATTAGAGCTGCGACGACTGCGAGAAAAACATCTTAAA
GAGATCCAAGACCTACAGAGTCGCCAGAAGCATGAAATTGAATCTTTGTACACCAGGCTG
GGCAAAGCTCCCCCTGCTGTTATCATCCCCGCAGCCGCCCCTCTTGCAGGGAGAAGAAGG
CGACCCACCAAAAGCAAAGGCAGCAAGTCTAGTCGCAGCAGTTCCTTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               86-349, - strand, RNAz p=0.751276

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               86-349, - strand, RNAz p=0.751276

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               7-440, gnl|bosTau2|chr5 (65105119-65105552)
               

               
               7-440, gnl|Hg17|chr12 (865110-865546)
               

               
               7-440, gnl|Mm7|chr6 (119973689-119973243)
               


               
               705-1370, gnl|bosTau2|chr5 (65112604-65113254)
               

               
               705-1370, gnl|Hg17|chr12 (875494-876159)
               

               
               705-1370, gnl|Mm7|chr6 (119963323-119962658)
               


               
               1371-1548, gnl|bosTau2|chr5 (65113986-65114163)
               

               
               1371-1548, gnl|Hg17|chr12 (876906-877083)
               

               
               1371-1548, gnl|Mm7|chr6 (119961872-119961695)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-440, gnl|bosTau2|chr5 (65105119-65105552)
               

               
               7-440, gnl|Hg17|chr12 (865110-865546)
               

               
               7-440, gnl|Mm7|chr6 (119973689-119973243)
               


               
               705-1370, gnl|bosTau2|chr5 (65112604-65113254)
               

               
               705-1370, gnl|Hg17|chr12 (875494-876159)
               

               
               705-1370, gnl|Mm7|chr6 (119963323-119962658)
               


               
               1371-1548, gnl|bosTau2|chr5 (65113986-65114163)
               

               
               1371-1548, gnl|Hg17|chr12 (876906-877083)
               

               
               1371-1548, gnl|Mm7|chr6 (119961872-119961695)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	7-440, gnl\|bosTau2\|chr5 (65105119-65105552)
	7-440, gnl\|Hg17\|chr12 (865110-865546)
	7-440, gnl\|Mm7\|chr6 (119973689-119973243)

	705-1370, gnl\|bosTau2\|chr5 (65112604-65113254)
	705-1370, gnl\|Hg17\|chr12 (875494-876159)
	705-1370, gnl\|Mm7\|chr6 (119963323-119962658)

	1371-1548, gnl\|bosTau2\|chr5 (65113986-65114163)
	1371-1548, gnl\|Hg17\|chr12 (876906-877083)
	1371-1548, gnl\|Mm7\|chr6 (119961872-119961695)