Ss1.1-Pig4-TMW8064F01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCCGGCGCGCTGCGGCCCCGCCCCGGCCCCGGCGCCTCCCGAGGGAGCGGCGCCGCCGG CCGAGCGCAGGCCCGGCCATGACCGACTTCAAATTGGGTATCGTGCGGCTCGGCCGGGTG GCCGGGAAGACCAAGTACACACTGATAGACGAGCAGGACATCCCGCTGGTGGAGGGCTAC TCCTTTGAGGCCCGGATGGAAGTGGACGCAGACGGAAATGGTGCTAAGATATTCGCATAC GCCTTTGACAAAAACCGAGGCAGGGGCTCGGGGAGGCTCCTTCATGAGCTGCTGTGGGAG CGGCACAGGGGGGGCATTGCTCCCGGGTTCCAGGTGGTGCATCTCAACGCTGTCACTGTG GACAATCGCCTGGACAACCTGCAGCTGGTGCCATGGGGCTGGCGGCCCAAAGCTGAAGAG ACCTCCAGCAAGCAAAGGGAGCAAAGCTTATACTGGCTCGCGATTCAGCAGCTTCCCACG GACCCCATAGAGGAGCAGTTCCCTGTCCTGAACGTGACCCGGTACTACAATGCCAACGGG GACGTGGTGGAAGAGGAGGAGACGTCCTGTACCTACTACGAGTGCCATTACCCTCCCTGC ACGATGATTGAGAAGCAGCTCCGGGAGTTCAACATCTGTGGGCGCTGCCAGGTGGCGCGC TACTGTGGCTCCCAGTGCCAGCAGAAGGACTGGCCCGCGCACAAGAAGCACTGTCGGGAG AAGAAGCGCCCCTTCCAGCACGAGCTCGAGCCGGAGCGATGACCGATGACCGGGCAGCAG AGCCGCCTCAGGCCCGAGATGCCGCGGTGTCTGGATCTCCGCGGGGAGGTGTGGACCAGG CTGATGGCTGGACCAGAGCTACTGGAGGAGCCGCCCAGCCCCGCCCCCGCGCCACTGGCC CCGCCCCCGCCCCGCCCCCGCGCTCGCCTGGAGCTGGAGCAGAGACCGCTGGGAGGCTCC GCAGGGACAGTTCTCATTATTTATATGTTAATATGTTTGTAAACTCATGTACAGTTTTTC TGGGGGGAGGCCGTGGCAGGGTTAGAAATTACAAATAGTGTCATTTGCTGTAACACTCAA ATTCTCCGGGTAGCCGGGTCGAGGAGGGCGGCCTGCCTGGGACCTGGCACAAGGCAAAGT AAAGGGTGGGAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCCGGCGCGCTGCGGCCCCGCCCCGGCCCCGGCGCCTCCCGAGGGAGCGGCGCCGCCGG CCGAGCGCAGGCCCGGCCATGACCGACTTCAAATTGGGTATCGTGCGGCTCGGCCGGGTG GCCGGGAAGACCAAGTACACACTGATAGACGAGCAGGACATCCCGCTGGTGGAGGGCTAC TCCTTTGAGGCCCGGATGGAAGTGGACGCAGACGGAAATGGTGCTAAGATATTCGCATAC GCCTTTGACAAAAACCGAGGCAGGGGCTCGGGGAGGCTCCTTCATGAGCTGCTGTGGGAG CGGCACAGGGGGGGCATTGCTCCCGGGTTCCAGGTGGTGCATCTCAACGCTGTCACTGTG GACAATCGCCTGGACAACCTGCAGCTGGTGCCATGGGGCTGGCGGCCCAAAGCTGAAGAG ACCTCCAGCAAGCAAAGGGAGCAAAGCTTATACTGGCTCGCGATTCAGCAGCTTCCCACG GACCCCATAGAGGAGCAGTTCCCTGTCCTGAACGTGACCCGGTACTACAATGCCAACGGG GACGTGGTGGAAGAGGAGGAGACGTCCTGTACCTACTACGAGTGCCATTACCCTCCCTGC ACGATGATTGAGAAGCAGCTCCGGGAGTTCAACATCTGTGGGCGCTGCCAGGTGGCGCGC TACTGTGGCTCCCAGTGCCAGCAGAAGGACTGGCCCGCGCACAAGAAGCACTGTCGGGAG AAGAAGCGCCCCTTCCAGCACGAGCTCGAGCCGGAGCGATGACCGATGACCGGGCAGCAG AGCCGCCTCAGGCCCGAGATGCCGCGGTGTCTGGATCTCCGCGGGGAGGTGTGGACCAGG CTGATGGCTGGACCAGAGCTACTGGAGGAGCCGCCCAGCCCCGCCCCCGCGCCACTGGCC CCGCCCCCGCCCCGCCCCCGCGCTCGCCTGGAGCTGGAGCAGAGACCGCTGGGAGGCTCC GCAGGGACAGTTCTCATTATTTATATGTTAATATGTTTGTAAACTCATGTACAGTTTTTC TGGGGGGAGGCCGTGGCAGGGTTAGAAATTACAAATAGTGTCATTTGCTGTAACACTCAA ATTCTCCGGGTAGCCGGGTCGAGGAGGGCGGCCTGCCTGGGACCTGGCACAAGGCAAAGT AAAGGGTGGGAC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
| 181-297, gnl|bosTau2|chr20 (38208782-38208666) | |
| 181-297, gnl|canFam2|chr9 (51523379-51523460) | |
| 181-297, gnl|canFam2|chr9 (51523501-51523356) | |
| 181-297, gnl|danRer3|chr5 (55599885-55599965) | |
| 181-297, gnl|danRer3|chr5 (55600005-55599885) | |
| 181-297, gnl|dasNov1|scaffold_212720 (2309-2227) | |
| 181-297, gnl|dasNov1|scaffold_38326 (9503-9655) | |
| 181-297, gnl|echTel1|scaffold_206317 (4551-4620) | |
| 181-297, gnl|echTel1|scaffold_268251 (2692-2844) | |
| 181-297, gnl|fr1|chrUn (146750520-146750444) | |
| 181-297, gnl|fr1|chrUn (146750407-146750555) | |
| 181-297, gnl|galGal2|chr17 (9316116-9316035) | |
| 181-297, gnl|galGal2|chr17 (9315994-9316153) | |
| 181-297, gnl|hg17|chr14 (77232911-77232992) | |
| 181-297, gnl|hg17|chr9 (137757998-137758150) | |
| 181-297, gnl|Hg17|chr9 (137758121-137758005) | |
| 181-297, gnl|mm7|chr12 (57580957-57580876) | |
| 181-297, gnl|mm7|chr2 (24960013-24959856) | |
| 181-297, gnl|Mm7|chr2 (24959888-24960004) | |
| 181-297, gnl|monDom2|scaffold_0 (96435391-96435310) | |
| 181-297, gnl|monDom2|scaffold_1 (186878533-186878684) | |
| 181-297, gnl|oryCun1|scaffold_126951 (4700-4551) | |
| 181-297, gnl|oryCun1|scaffold_172666 (30708-30789) | |
| 181-297, gnl|panTro1|chr11 (122433029-122433181) | |
| 181-297, gnl|panTro1|chr15 (77294333-77294414) | |
| 181-297, gnl|rheMac2|chr15 (654270-654118) | |
| 181-297, gnl|rheMac2|chr7 (140851403-140851484) | |
| 181-297, gnl|rn3|chr3 (5099526-5099610) | |
| 181-297, gnl|rn3|chr3 (5099651-5099495) | |
| 181-297, gnl|tetNig1|chr4 (2593080-2592999) | |
| 181-297, gnl|tetNig1|chr4 (2592958-2593093) | |
| 181-297, gnl|xenTro1|scaffold_302 (1199243-1199379) | |
| 435-623, gnl|bosTau2|chr20 (38201770-38201582) | |
| 435-623, gnl|canFam2|chr9 (51529146-51529322) | |
| 435-623, gnl|danRer3|chr5 (55602242-55602417) | |
| 435-623, gnl|dasNov1|scaffold_212720 (2054-1876) | |
| 435-623, gnl|echTel1|scaffold_206317 (4792-4969) | |
| 435-623, gnl|fr1|chrUn (146749745-146749571) | |
| 435-623, gnl|hg17|chr14 (77233156-77233332) | |
| 435-623, gnl|Hg17|chr9 (137753455-137753267) | |
| 435-623, gnl|mm7|chr12 (57580704-57580527) | |
| 435-623, gnl|Mm7|chr2 (24965344-24965529) | |
| 435-623, gnl|monDom2|scaffold_0 (96435138-96434958) | |
| 435-623, gnl|oryCun1|scaffold_172666 (30966-31139) | |
| 435-623, gnl|panTro1|chr11_random (11057509-11057685) | |
| 435-623, gnl|rheMac2|chr7 (140851649-140851824) | |
| 435-623, gnl|rn3|chr3 (5105287-5105467) | |
| 435-623, gnl|tetNig1|chr4 (2592393-2592218) | |
| 934-1111, gnl|bosTau2|chr20 (38201216-38201048) | |
| 934-1111, gnl|Hg17|chr9 (137752654-137752486) | |
| 934-1111, gnl|Mm7|chr2 (24966554-24966699) |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 181-297, gnl|bosTau2|chr20 (38208782-38208666) | |
| 181-297, gnl|canFam2|chr9 (51523379-51523460) | |
| 181-297, gnl|canFam2|chr9 (51523501-51523356) | |
| 181-297, gnl|danRer3|chr5 (55599885-55599965) | |
| 181-297, gnl|danRer3|chr5 (55600005-55599885) | |
| 181-297, gnl|dasNov1|scaffold_212720 (2309-2227) | |
| 181-297, gnl|dasNov1|scaffold_38326 (9503-9655) | |
| 181-297, gnl|echTel1|scaffold_206317 (4551-4620) | |
| 181-297, gnl|echTel1|scaffold_268251 (2692-2844) | |
| 181-297, gnl|fr1|chrUn (146750520-146750444) | |
| 181-297, gnl|fr1|chrUn (146750407-146750555) | |
| 181-297, gnl|galGal2|chr17 (9316116-9316035) | |
| 181-297, gnl|galGal2|chr17 (9315994-9316153) | |
| 181-297, gnl|hg17|chr14 (77232911-77232992) | |
| 181-297, gnl|hg17|chr9 (137757998-137758150) | |
| 181-297, gnl|Hg17|chr9 (137758121-137758005) | |
| 181-297, gnl|mm7|chr12 (57580957-57580876) | |
| 181-297, gnl|mm7|chr2 (24960013-24959856) | |
| 181-297, gnl|Mm7|chr2 (24959888-24960004) | |
| 181-297, gnl|monDom2|scaffold_0 (96435391-96435310) | |
| 181-297, gnl|monDom2|scaffold_1 (186878533-186878684) | |
| 181-297, gnl|oryCun1|scaffold_126951 (4700-4551) | |
| 181-297, gnl|oryCun1|scaffold_172666 (30708-30789) | |
| 181-297, gnl|panTro1|chr11 (122433029-122433181) | |
| 181-297, gnl|panTro1|chr15 (77294333-77294414) | |
| 181-297, gnl|rheMac2|chr15 (654270-654118) | |
| 181-297, gnl|rheMac2|chr7 (140851403-140851484) | |
| 181-297, gnl|rn3|chr3 (5099526-5099610) | |
| 181-297, gnl|rn3|chr3 (5099651-5099495) | |
| 181-297, gnl|tetNig1|chr4 (2593080-2592999) | |
| 181-297, gnl|tetNig1|chr4 (2592958-2593093) | |
| 181-297, gnl|xenTro1|scaffold_302 (1199243-1199379) | |
| 435-623, gnl|bosTau2|chr20 (38201770-38201582) | |
| 435-623, gnl|canFam2|chr9 (51529146-51529322) | |
| 435-623, gnl|danRer3|chr5 (55602242-55602417) | |
| 435-623, gnl|dasNov1|scaffold_212720 (2054-1876) | |
| 435-623, gnl|echTel1|scaffold_206317 (4792-4969) | |
| 435-623, gnl|fr1|chrUn (146749745-146749571) | |
| 435-623, gnl|hg17|chr14 (77233156-77233332) | |
| 435-623, gnl|Hg17|chr9 (137753455-137753267) | |
| 435-623, gnl|mm7|chr12 (57580704-57580527) | |
| 435-623, gnl|Mm7|chr2 (24965344-24965529) | |
| 435-623, gnl|monDom2|scaffold_0 (96435138-96434958) | |
| 435-623, gnl|oryCun1|scaffold_172666 (30966-31139) | |
| 435-623, gnl|panTro1|chr11_random (11057509-11057685) | |
| 435-623, gnl|rheMac2|chr7 (140851649-140851824) | |
| 435-623, gnl|rn3|chr3 (5105287-5105467) | |
| 435-623, gnl|tetNig1|chr4 (2592393-2592218) | |
| 934-1111, gnl|bosTau2|chr20 (38201216-38201048) | |
| 934-1111, gnl|Hg17|chr9 (137752654-137752486) | |
| 934-1111, gnl|Mm7|chr2 (24966554-24966699) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| ecc (0.23007) | |
| ece (0.229305) | |
| nca (0.136874) | |
| med (0.116252) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ecc (0.23007) | |
| ece (0.229305) | |
| nca (0.136874) | |
| med (0.116252) |