Non-Coding RNA Search

Ss1.1-Pig4-TMW8064F02.3

Sequence:


               
               GGCCAGGCGGCCGGACCAGAGACCGGAGCACCGCGGCCCGGGGCGCGCGCCCGGAAGCGG
CCGGTGTGGACCGGGAGTCATGGCGGCCGCCGCGCTGGGGGCGGCCTCACGCACTCTGCG
CCCGGCGAGCCGGCTTGTGGGAGCGTGGCCGACGCAGACCAGAGACGCGCACGAGCGAGG
CTCGCTATTCTCCTTTTGGGGTCTCGTGCCCATGAGAGCAGAACCTCTTCGAAAGAAGAA
GAAAGTAGATCCTAAGAAAGACCAAGCAGCAAAGGACCGCTTGAAAAAGAGGATCAGACG
ACTGGAGAAGGCAAGCCAGGAGCTCATTCCCATTGAGGATTTTATCACGCCAGTCAAGTT
CTTGAATAAAGAGAGACAGCGGCCTCCTGTGGAGCTGCCCTTTGAGGAGAGCGAGCGGAG
AGCCCTGCTTCTGAAGCGGTGGTCATTGTACAAGCAGCGAGAGCATGAGATGGAGAGGAG
TGCCATCAGGTCCCTGCTTGAGGCCCAGGAGGAAGCTCTGCAGGAGCTGAGGCTCTCATC
CCCAGAACTCCATGCGGAGGCCACCAAGAGGGACCCCAGCCTGTTCCCCTTTGAAAGGCA
AGGGCCAGATTACACACCACCGATCTCTGACTACCAGCCCCCGGAAGGCAGGTACCAGGA
CATCACCAAGGTGTACACACAGGTGGAGTTCAAGAAATAGACTGTCCTTGAGAGCCCATG
CCATTGGGGCCTGAGCCTGCTTGCGACAGGGTTACGTGGGCTATGAATAAATATGTTCAA
CCTGCAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCAGGCGGCCGGACCAGAGACCGGAGCACCGCGGCCCGGGGCGCGCGCCCGGAAGCGG
CCGGTGTGGACCGGGAGTCATGGCGGCCGCCGCGCTGGGGGCGGCCTCACGCACTCTGCG
CCCGGCGAGCCGGCTTGTGGGAGCGTGGCCGACGCAGACCAGAGACGCGCACGAGCGAGG
CTCGCTATTCTCCTTTTGGGGTCTCGTGCCCATGAGAGCAGAACCTCTTCGAAAGAAGAA
GAAAGTAGATCCTAAGAAAGACCAAGCAGCAAAGGACCGCTTGAAAAAGAGGATCAGACG
ACTGGAGAAGGCAAGCCAGGAGCTCATTCCCATTGAGGATTTTATCACGCCAGTCAAGTT
CTTGAATAAAGAGAGACAGCGGCCTCCTGTGGAGCTGCCCTTTGAGGAGAGCGAGCGGAG
AGCCCTGCTTCTGAAGCGGTGGTCATTGTACAAGCAGCGAGAGCATGAGATGGAGAGGAG
TGCCATCAGGTCCCTGCTTGAGGCCCAGGAGGAAGCTCTGCAGGAGCTGAGGCTCTCATC
CCCAGAACTCCATGCGGAGGCCACCAAGAGGGACCCCAGCCTGTTCCCCTTTGAAAGGCA
AGGGCCAGATTACACACCACCGATCTCTGACTACCAGCCCCCGGAAGGCAGGTACCAGGA
CATCACCAAGGTGTACACACAGGTGGAGTTCAAGAAATAGACTGTCCTTGAGAGCCCATG
CCATTGGGGCCTGAGCCTGCTTGCGACAGGGTTACGTGGGCTATGAATAAATATGTTCAA
CCTGCAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               RM40_RAT

Coded protein: 1 entry(ies)

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Protein identifier


               
               RM40_RAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               453-612, - strand, RNAz p=0.995503

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               453-612, - strand, RNAz p=0.995503

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               374-702, gnl|bosTau2|chr17 (43861195-43861523)
               

               
               374-702, gnl|Hg17|chr22 (17797713-17798041)
               

               
               374-702, gnl|Mm7|chr16_random (3167566-3167897)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               374-702, gnl|bosTau2|chr17 (43861195-43861523)
               

               
               374-702, gnl|Hg17|chr22 (17797713-17798041)
               

               
               374-702, gnl|Mm7|chr16_random (3167566-3167897)

Expressed library(ies): 28 entry(ies)

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Expressed library(ies): 28 entry(ies)

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               pgl (0.473934)
               

               
               nms (0.427716)
               

               
               elu (0.385356)
               

               
               eep (0.367692)
               

               
               eli (0.303628)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               nbm (0.198649)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               ldo (0.0970026)

Expressed library(ies): 28 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.473934)
               

               
               nms (0.427716)
               

               
               elu (0.385356)
               

               
               eep (0.367692)
               

               
               eli (0.303628)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               nbm (0.198649)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               ldo (0.0970026)

	374-702, gnl\|bosTau2\|chr17 (43861195-43861523)
	374-702, gnl\|Hg17\|chr22 (17797713-17798041)
	374-702, gnl\|Mm7\|chr16_random (3167566-3167897)

	pgl (0.473934)
	nms (0.427716)
	elu (0.385356)
	eep (0.367692)
	eli (0.303628)
	hyp (0.285673)
	fce (0.271592)
	pla (0.267344)
	ebs (0.236602)
	ecc (0.23007)
	ece (0.229305)
	mas (0.210305)
	nbm (0.198649)
	fcc (0.197785)
	eje (0.197668)
	mcp (0.170648)
	eye (0.170503)
	fhi (0.169578)
	cag (0.151194)
	lun (0.150489)
	spl (0.143184)
	hlv (0.139256)
	che (0.136314)
	ssp (0.13552)
	bla (0.124347)
	cly (0.120642)
	med (0.116252)
	ldo (0.0970026)