Ss1.1-Pig4-TMW8064F06.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATCCGCGTCGCCGCCGCTGCCGCCTCCGCCGCGGAGGAAGACAGGACCTCCCGCTCTCCT TTAGCGACCCTTCGCAGAGTCCCACCGCCACAGGCCTCGGGCCAGCGGCGAGGAGCTGCC TCCCCCAGCCCCCGTCCCGCGGCCCCCAGCCGCCCCCAACCCCGCCCCACGGGCCCGGCG CCATGAGTGAGCTGGAGCAACTGAGACAGGAGGCCGAGCAGCTCCGGAACCAGATCCGGG ATGCCCGAAAAGCATGTGGAGATTCAACACTGACCCAGATCACAGCTGGGCTGGACCCAG TGGGGAGAATCCAGATGAGGACACGGAGGACTCTCCGTGGGCACCTGGCAAAAATCTATG CCATGCACTGGGGGACAGACTCAAGGCTGCTGGTCAGCGCCTCCCAGGATGGGAAGCTCA TCATTTGGGACAGCTACACCACCAACAAGGTCCACGCTATCCCACTGCGCTCCTCTTGGG TCATGACCTGTGCCTACGCGCCCTCAGGGAACTTTGTGGCCTGTGGGGGATTGGACAACA TCTGCTCCATCTACAGCCTCAAGACCCGTGAGGGCAATGTCAGGGTCAGCCGGGAGCTGC CTGGCCACACTGGCTACCTGTCATGCTGCCGCTTCCTGGATGACAACCAAATCATCACCA GCTCGGGGGACACCACCTGTGCCCTGTGGGACATTGAGACTGGCCAGCAGACAGTGGGTT TTGCTGGACACAGTGGGGATGTAATGTCCCTGTCGCTGGCCCCCGATGGCCGCACCTTTG TGTCAGGAGCCTGTGACGCCTCCATCAAGCTGTGGGACGTGCGAGATTCGATGTGCCGAC AGACCTTCATCGGCCACGAATCCGACATCAATGCCGTGGCATTCTTCCCCAACGGCTACG CCTTCACCACGGGCTCCGATGATGCTACGTGCCGCCTCTTTGATCTGCGGGCCGACCAGG AGCTCCTCATGTATTCCCACGACAACATCATCTGCGGCATCACCTCTGTTGCCTTCTCGC GCAGCGGCAGGCTGCTGCTCGCTGGCTATGATGACTTCAACTGCAACATCTGGGATGCCA TGAAGGGCGACCGTGCAGGTGTCCTCGCAGGCCATGACAACCGTGTGAGCTGCCTTGGTG TCACTGATGATGGCATGGCTGTGGCCACAGGCTCCTGGGACTCCTTCCTCAAGATCTGGA ACTAACAGCCCCGACCCCAACTGGGCCCAGGCTAGGAGGGGCCCTGCCCATGCCCACACT ACAGGCCGGGAGCTCTGGGGCTGGGTGCACACCGAGCCTCCCCCGCCAGGCCACGGGGCC TTGGGTCCCTGCTCCCCTACCCTGGTTTGGTTCCTCCTGGGGGCCCCACTGTGGTGATTA AGATGGGGATAGAATGGGGAAGAGGGGCAGAAAGCCCTCACCCTTTTGCTGCCCTGGGGT TGGGGCCTCATCCCTCTGGAGGGCCAGAGGCAGGAGGTGGAAACTTCAGGGGCTGGCTTT TTTAAAACTTGGTTTATTTTAATTTTTATTATATTTTCAGTTTTTCCATAAAGGAACCAA TTCCAACTCTGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATCCGCGTCGCCGCCGCTGCCGCCTCCGCCGCGGAGGAAGACAGGACCTCCCGCTCTCCT TTAGCGACCCTTCGCAGAGTCCCACCGCCACAGGCCTCGGGCCAGCGGCGAGGAGCTGCC TCCCCCAGCCCCCGTCCCGCGGCCCCCAGCCGCCCCCAACCCCGCCCCACGGGCCCGGCG CCATGAGTGAGCTGGAGCAACTGAGACAGGAGGCCGAGCAGCTCCGGAACCAGATCCGGG ATGCCCGAAAAGCATGTGGAGATTCAACACTGACCCAGATCACAGCTGGGCTGGACCCAG TGGGGAGAATCCAGATGAGGACACGGAGGACTCTCCGTGGGCACCTGGCAAAAATCTATG CCATGCACTGGGGGACAGACTCAAGGCTGCTGGTCAGCGCCTCCCAGGATGGGAAGCTCA TCATTTGGGACAGCTACACCACCAACAAGGTCCACGCTATCCCACTGCGCTCCTCTTGGG TCATGACCTGTGCCTACGCGCCCTCAGGGAACTTTGTGGCCTGTGGGGGATTGGACAACA TCTGCTCCATCTACAGCCTCAAGACCCGTGAGGGCAATGTCAGGGTCAGCCGGGAGCTGC CTGGCCACACTGGCTACCTGTCATGCTGCCGCTTCCTGGATGACAACCAAATCATCACCA GCTCGGGGGACACCACCTGTGCCCTGTGGGACATTGAGACTGGCCAGCAGACAGTGGGTT TTGCTGGACACAGTGGGGATGTAATGTCCCTGTCGCTGGCCCCCGATGGCCGCACCTTTG TGTCAGGAGCCTGTGACGCCTCCATCAAGCTGTGGGACGTGCGAGATTCGATGTGCCGAC AGACCTTCATCGGCCACGAATCCGACATCAATGCCGTGGCATTCTTCCCCAACGGCTACG CCTTCACCACGGGCTCCGATGATGCTACGTGCCGCCTCTTTGATCTGCGGGCCGACCAGG AGCTCCTCATGTATTCCCACGACAACATCATCTGCGGCATCACCTCTGTTGCCTTCTCGC GCAGCGGCAGGCTGCTGCTCGCTGGCTATGATGACTTCAACTGCAACATCTGGGATGCCA TGAAGGGCGACCGTGCAGGTGTCCTCGCAGGCCATGACAACCGTGTGAGCTGCCTTGGTG TCACTGATGATGGCATGGCTGTGGCCACAGGCTCCTGGGACTCCTTCCTCAAGATCTGGA ACTAACAGCCCCGACCCCAACTGGGCCCAGGCTAGGAGGGGCCCTGCCCATGCCCACACT ACAGGCCGGGAGCTCTGGGGCTGGGTGCACACCGAGCCTCCCCCGCCAGGCCACGGGGCC TTGGGTCCCTGCTCCCCTACCCTGGTTTGGTTCCTCCTGGGGGCCCCACTGTGGTGATTA AGATGGGGATAGAATGGGGAAGAGGGGCAGAAAGCCCTCACCCTTTTGCTGCCCTGGGGT TGGGGCCTCATCCCTCTGGAGGGCCAGAGGCAGGAGGTGGAAACTTCAGGGGCTGGCTTT TTTAAAACTTGGTTTATTTTAATTTTTATTATATTTTCAGTTTTTCCATAAAGGAACCAA TTCCAACTCTGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 275-392, + strand, RNAz p=0.914951 | |
| 296-392, + strand, RNAz p=0.742883 | |
| 676-794, + strand, RNAz p=0.849142 | |
| 882-1000, - strand, RNAz p=0.678964 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 275-392, + strand, RNAz p=0.914951 | |
| 296-392, + strand, RNAz p=0.742883 | |
| 676-794, + strand, RNAz p=0.849142 | |
| 882-1000, - strand, RNAz p=0.678964 |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 92-240, gnl|bosTau2|chr25 (32321799-32321651) | |
| 92-240, gnl|Hg17|chr7 (99918449-99918597) | |
| 92-240, gnl|Mm7|chr5 (136449110-136448962) | |
| 275-392, gnl|bosTau2|chr25 (32321290-32321173) | |
| 275-392, gnl|canFam2|chr6 (12041385-12041255) | |
| 275-392, gnl|danRer3|chr5 (38614862-38614731) | |
| 275-392, gnl|dasNov1|scaffold_5223 (33035-33156) | |
| 275-392, gnl|echTel1|scaffold_301777 (138-268) | |
| 275-392, gnl|fr1|chrUn (100457974-100457856) | |
| 275-392, gnl|galGal2|chr9 (16961536-16961410) | |
| 275-392, gnl|hg17|chr7 (99918956-99919088) | |
| 275-392, gnl|Hg17|chr7 (99918963-99919080) | |
| 275-392, gnl|loxAfr1|scaffold_16571 (34739-34869) | |
| 275-392, gnl|mm7|chr5 (136448571-136448443) | |
| 275-392, gnl|Mm7|chr5 (136448562-136448445) | |
| 275-392, gnl|monDom2|scaffold_66 (2527127-2527247) | |
| 275-392, gnl|oryCun1|scaffold_205825 (36154-36012) | |
| 275-392, gnl|panTro1|chr6 (101694700-101694830) | |
| 275-392, gnl|rheMac2|chr3 (47862658-47862788) | |
| 275-392, gnl|rn3|chr12 (19588941-19588811) | |
| 275-392, gnl|tetNig1|chr1 (11937650-11937761) | |
| 275-392, gnl|xenTro1|scaffold_594 (499316-499199) | |
| 448-613, gnl|bosTau2|chr16 (37607441-37607606) | |
| 448-613, gnl|Hg17|chr1 (1768184-1768019) | |
| 448-613, gnl|Mm7|chr4 (154532571-154532736) | |
| 676-880, gnl|bosTau2|chr25 (32320090-32319886) | |
| 676-880, gnl|Hg17|chr7 (99920368-99920572) | |
| 676-880, gnl|Mm7|chr5 (136447477-136447273) | |
| 679-875, gnl|bosTau2|chr16 (37614934-37615130) | |
| 679-875, gnl|canFam2|chr5 (59784935-59785093) | |
| 679-875, gnl|danRer3|chr19 (16879322-16879164) | |
| 679-875, gnl|dasNov1|scaffold_49124 (7507-7365) | |
| 679-875, gnl|echTel1|scaffold_179725 (10308-10150) | |
| 679-875, gnl|fr1|chrUn (62558600-62558442) | |
| 679-875, gnl|galGal2|chr21 (1855979-1855821) | |
| 679-875, gnl|hg17|chr1 (1753991-1754149) | |
| 679-875, gnl|Hg17|chr1 (1754198-1754002) | |
| 679-875, gnl|loxAfr1|scaffold_9369 (28294-28452) | |
| 679-875, gnl|mm7|chr4 (154543068-154542910) | |
| 679-875, gnl|Mm7|chr4 (154542859-154543055) | |
| 679-875, gnl|monDom2|scaffold_196 (851536-851694) | |
| 679-875, gnl|oryCun1|scaffold_176977 (104183-104341) | |
| 679-875, gnl|panTro1|chr1 (1620855-1621013) | |
| 679-875, gnl|rheMac2|chr1 (4818600-4818758) | |
| 679-875, gnl|rn3|chr5 (172392740-172392582) | |
| 679-875, gnl|tetNig1|chrUn_random (28491362-28491520) | |
| 679-875, gnl|xenTro1|scaffold_609 (291306-291148) | |
| 882-1100, gnl|bosTau2|chr16 (37615850-37616068) | |
| 882-1100, gnl|Hg17|chr1 (1752870-1752652) | |
| 882-1100, gnl|Mm7|chr4 (154544557-154544775) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 92-240, gnl|bosTau2|chr25 (32321799-32321651) | |
| 92-240, gnl|Hg17|chr7 (99918449-99918597) | |
| 92-240, gnl|Mm7|chr5 (136449110-136448962) | |
| 275-392, gnl|bosTau2|chr25 (32321290-32321173) | |
| 275-392, gnl|canFam2|chr6 (12041385-12041255) | |
| 275-392, gnl|danRer3|chr5 (38614862-38614731) | |
| 275-392, gnl|dasNov1|scaffold_5223 (33035-33156) | |
| 275-392, gnl|echTel1|scaffold_301777 (138-268) | |
| 275-392, gnl|fr1|chrUn (100457974-100457856) | |
| 275-392, gnl|galGal2|chr9 (16961536-16961410) | |
| 275-392, gnl|hg17|chr7 (99918956-99919088) | |
| 275-392, gnl|Hg17|chr7 (99918963-99919080) | |
| 275-392, gnl|loxAfr1|scaffold_16571 (34739-34869) | |
| 275-392, gnl|mm7|chr5 (136448571-136448443) | |
| 275-392, gnl|Mm7|chr5 (136448562-136448445) | |
| 275-392, gnl|monDom2|scaffold_66 (2527127-2527247) | |
| 275-392, gnl|oryCun1|scaffold_205825 (36154-36012) | |
| 275-392, gnl|panTro1|chr6 (101694700-101694830) | |
| 275-392, gnl|rheMac2|chr3 (47862658-47862788) | |
| 275-392, gnl|rn3|chr12 (19588941-19588811) | |
| 275-392, gnl|tetNig1|chr1 (11937650-11937761) | |
| 275-392, gnl|xenTro1|scaffold_594 (499316-499199) | |
| 448-613, gnl|bosTau2|chr16 (37607441-37607606) | |
| 448-613, gnl|Hg17|chr1 (1768184-1768019) | |
| 448-613, gnl|Mm7|chr4 (154532571-154532736) | |
| 676-880, gnl|bosTau2|chr25 (32320090-32319886) | |
| 676-880, gnl|Hg17|chr7 (99920368-99920572) | |
| 676-880, gnl|Mm7|chr5 (136447477-136447273) | |
| 679-875, gnl|bosTau2|chr16 (37614934-37615130) | |
| 679-875, gnl|canFam2|chr5 (59784935-59785093) | |
| 679-875, gnl|danRer3|chr19 (16879322-16879164) | |
| 679-875, gnl|dasNov1|scaffold_49124 (7507-7365) | |
| 679-875, gnl|echTel1|scaffold_179725 (10308-10150) | |
| 679-875, gnl|fr1|chrUn (62558600-62558442) | |
| 679-875, gnl|galGal2|chr21 (1855979-1855821) | |
| 679-875, gnl|hg17|chr1 (1753991-1754149) | |
| 679-875, gnl|Hg17|chr1 (1754198-1754002) | |
| 679-875, gnl|loxAfr1|scaffold_9369 (28294-28452) | |
| 679-875, gnl|mm7|chr4 (154543068-154542910) | |
| 679-875, gnl|Mm7|chr4 (154542859-154543055) | |
| 679-875, gnl|monDom2|scaffold_196 (851536-851694) | |
| 679-875, gnl|oryCun1|scaffold_176977 (104183-104341) | |
| 679-875, gnl|panTro1|chr1 (1620855-1621013) | |
| 679-875, gnl|rheMac2|chr1 (4818600-4818758) | |
| 679-875, gnl|rn3|chr5 (172392740-172392582) | |
| 679-875, gnl|tetNig1|chrUn_random (28491362-28491520) | |
| 679-875, gnl|xenTro1|scaffold_609 (291306-291148) | |
| 882-1100, gnl|bosTau2|chr16 (37615850-37616068) | |
| 882-1100, gnl|Hg17|chr1 (1752870-1752652) | |
| 882-1100, gnl|Mm7|chr4 (154544557-154544775) |
| Expressed library(ies): 27 entry(ies) | More info |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
| nlu (0.575043) | |
| cov (0.528611) | |
| nep (0.36785) | |
| jca (0.34188) | |
| cag (0.302389) | |
| pty (0.285429) | |
| cga (0.279096) | |
| nmm (0.265604) | |
| ese (0.253004) | |
| cly (0.241284) | |
| cty (0.20816) | |
| fcc (0.197785) | |
| col (0.195008) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| nco (0.161734) | |
| csp (0.161186) | |
| cli (0.152812) | |
| eli (0.151814) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| ute (0.132784) | |
| eep (0.122564) | |
| eru (0.120048) | |
| ecc (0.115035) | |
| jej (0.0989218) |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.575043) | |
| cov (0.528611) | |
| nep (0.36785) | |
| jca (0.34188) | |
| cag (0.302389) | |
| pty (0.285429) | |
| cga (0.279096) | |
| nmm (0.265604) | |
| ese (0.253004) | |
| cly (0.241284) | |
| cty (0.20816) | |
| fcc (0.197785) | |
| col (0.195008) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| nco (0.161734) | |
| csp (0.161186) | |
| cli (0.152812) | |
| eli (0.151814) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| ute (0.132784) | |
| eep (0.122564) | |
| eru (0.120048) | |
| ecc (0.115035) | |
| jej (0.0989218) |