Non-Coding RNA Search

Ss1.1-Pig4-TMW8064F20.3

Sequence:


               
               TGCACTTAAAAAATAGTGGTCTTCAATTTAATTTAAAATTAGTTTGATAATATTTAATTT
GTGTTTATGTTATGTCTTTGGGGTGGGTGCAGACATGTCACAGTATGACCTCTGGGTCTC
TGCTCAAAAGCAGAACAAGTGACAACCTAAACATCAAAACCACTGCCCATTTTTGTTTGA
TGAACTTCAGTCTGTTCATTTAGATCCCCCGTGGAGCAAATGCAGACACGATTCTGGCAG
GACCATTCGTTCGTATTTGACCAAAGCATTGGAGAATGTGGTTCTGACCGTTGTGCATTT
TCAGTAGCACTGGATCCCTCAGTCTTCACCCTTTTATAAATGTGTAAGATTAGGATGAAC
TTTGGAATTTACATGGTAGGAAGAAAAGTAGTACATTATTGCCATACTGTATGTCTTAAT
ATTTAACTTATTCTGAAATATATTCCACACCATTATACACATTTGCTCATGTAGAAAAGA
AGCTCAATCAGTCCTGTGAAAGGAGTCCATCTCCTAAATTTGGCATTTATAATATCCTAA
AAGCCCACAGTTGGGAAAAAGAAATTGATTTTGTGTTAAGATTTCACGTTAACCATCTTG
TAAACTCATGGTTGATTTGAGTAATGAAAAACATCCTTAAAGAGAATTGGGGGTTAAGAG
ATATTATTCCTCTGGCCCAAAGGTGAAAAAGGCCAATAGCCTGTTACCAATTATTTTAAC
ATTTAAAAAAAAAAAATGACAACTTAAAACTTATCTCTGCTTAAAGTGCGATGTATCTTC
CAACTGTTTTGTTACCCAGCTGTTTAATAGTCCAGTTCTCCCAAAGTGGAAAAATTTGTA
TACAGATGAGTTTTCTATGATTTAATAAAAATATATGGAGCACTCTTTGTTTAAAAAGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCACTTAAAAAATAGTGGTCTTCAATTTAATTTAAAATTAGTTTGATAATATTTAATTT
GTGTTTATGTTATGTCTTTGGGGTGGGTGCAGACATGTCACAGTATGACCTCTGGGTCTC
TGCTCAAAAGCAGAACAAGTGACAACCTAAACATCAAAACCACTGCCCATTTTTGTTTGA
TGAACTTCAGTCTGTTCATTTAGATCCCCCGTGGAGCAAATGCAGACACGATTCTGGCAG
GACCATTCGTTCGTATTTGACCAAAGCATTGGAGAATGTGGTTCTGACCGTTGTGCATTT
TCAGTAGCACTGGATCCCTCAGTCTTCACCCTTTTATAAATGTGTAAGATTAGGATGAAC
TTTGGAATTTACATGGTAGGAAGAAAAGTAGTACATTATTGCCATACTGTATGTCTTAAT
ATTTAACTTATTCTGAAATATATTCCACACCATTATACACATTTGCTCATGTAGAAAAGA
AGCTCAATCAGTCCTGTGAAAGGAGTCCATCTCCTAAATTTGGCATTTATAATATCCTAA
AAGCCCACAGTTGGGAAAAAGAAATTGATTTTGTGTTAAGATTTCACGTTAACCATCTTG
TAAACTCATGGTTGATTTGAGTAATGAAAAACATCCTTAAAGAGAATTGGGGGTTAAGAG
ATATTATTCCTCTGGCCCAAAGGTGAAAAAGGCCAATAGCCTGTTACCAATTATTTTAAC
ATTTAAAAAAAAAAAATGACAACTTAAAACTTATCTCTGCTTAAAGTGCGATGTATCTTC
CAACTGTTTTGTTACCCAGCTGTTTAATAGTCCAGTTCTCCCAAAGTGGAAAAATTTGTA
TACAGATGAGTTTTCTATGATTTAATAAAAATATATGGAGCACTCTTTGTTTAAAAAGGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-151, - strand, RNAz p=0.814782

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-151, - strand, RNAz p=0.814782

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-900, gnl|bosTau2|chr21 (17045499-17046392)
               

               
               1-900, gnl|Hg17|chr15 (81716535-81715643)
               

               
               1-900, gnl|Mm7|chr7 (77840989-77840102)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-900, gnl|bosTau2|chr21 (17045499-17046392)
               

               
               1-900, gnl|Hg17|chr15 (81716535-81715643)
               

               
               1-900, gnl|Mm7|chr7 (77840989-77840102)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               tra (0.246184)
               

               
               ski (0.146735)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.246184)
               

               
               ski (0.146735)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	1-900, gnl\|bosTau2\|chr21 (17045499-17046392)
	1-900, gnl\|Hg17\|chr15 (81716535-81715643)
	1-900, gnl\|Mm7\|chr7 (77840989-77840102)