Non-Coding RNA Search

Ss1.1-Pig4-TMW8064G11.3

Sequence:


               
               AGAAGCAGAGGCAGGCGCGGAGGGATCGGGCCAGGGAGGAGGCCGAGTGGCAGACGAGGT
GGTTTCACCGAGGCATTAACCCCCACACCGGCACCCCCGACTGGCTGTACACAGGGGGCT
ACTTTGAGCGGGATTTCTCAGGCTGCCCAGACATCTACTGAGGGCCCGGACTGGCCCCGG
ACCCGGGGACGGAGAGGCTGGACTCGGCCGAGCGGCTGTTCTGAGCTTCGGTCACGGCAG
AAACTGCTGCTGGCGGGGCTCCATCCCTGGCTGAGGACTTCATTCTAATTAACCTGTGGT
TGCCAAACATTTTCCTACTGGTGCGGTCTCTTCATACAGCTTCGCTTGGGTCATCGTGTT
TCCGTTAAGGGTTGAAGAGGAAAATTCTTTGCGATTCCCTTTTGTGTGACAGGCCGGGCC
GGGGCTGAACGGGCCAGCAGCGCCTCCGCATCTGAGTATAAACAAGGGAAGCAACAGGAG
AGGCTCGGCCCGCTCCTCTCGTGTGGGGCAGAGGGTTTCTGAAAGTGTTTTAACTCGGAA
CCAGCAGCAGGAAAAGGTGGATCTTGAAAAAAAATCCCTCAAAGAGCTTTAGAAAGGCCA
AGAATGGCTTCTAAGTCACAGGAGCACAAAAGCGAAGATTTGCAAAGCATCACATTGAGT
GAGGTGGGAAGTTGTCAGATTCTGGGTTTTTCACCAAACCTCCCGTAATGTAAAGATTGC
TTCTAACATATTTAAGTTAAAGCTGCTTGAATAATATTTTGCTGAAGAGCGAGAGATGCA
TTCATCGCCACGGGCACACGGTCCAAAACGACGCGTCCCCGTGACAGCCAGCCGAGGGCG
ACCGGAAACACTGACCCAAAGTCCCCAGACGGCTCCCGACCCTGACGGGAGCCGCCTCTG
GCCACGTCTGCGCCTCTGGTCCCCAGGGCATCGCTGTCACTGCAGGCCGCGCCTGTGCCC
GCAGCACCTGTGTCCCCGTCTTGCATGTTTGAGATGCGCGGGGCCCACATCTGGGCGCCC
TGCTCCCCGTGGGGATGTCAGCTGTGTGGGTCCCTCCGCACACGTCTACACCCGGTGACT
GGTTCCTGCTGTAGTCACGCCAACACCACGACCGTGGCAGAGCTCCCCGAAGGGAAGGCA
GTCTGCGCGTGTGCCGTCATGCTCGCACGCAGCTGTATGGAGCGGGGGCTCCGCGAGCGG
CCATCCTTGCGTGTCCAGCTTCCACATCACATTTGTAATTAAAACCCTTTTAAAAGTGAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAGCAGAGGCAGGCGCGGAGGGATCGGGCCAGGGAGGAGGCCGAGTGGCAGACGAGGT
GGTTTCACCGAGGCATTAACCCCCACACCGGCACCCCCGACTGGCTGTACACAGGGGGCT
ACTTTGAGCGGGATTTCTCAGGCTGCCCAGACATCTACTGAGGGCCCGGACTGGCCCCGG
ACCCGGGGACGGAGAGGCTGGACTCGGCCGAGCGGCTGTTCTGAGCTTCGGTCACGGCAG
AAACTGCTGCTGGCGGGGCTCCATCCCTGGCTGAGGACTTCATTCTAATTAACCTGTGGT
TGCCAAACATTTTCCTACTGGTGCGGTCTCTTCATACAGCTTCGCTTGGGTCATCGTGTT
TCCGTTAAGGGTTGAAGAGGAAAATTCTTTGCGATTCCCTTTTGTGTGACAGGCCGGGCC
GGGGCTGAACGGGCCAGCAGCGCCTCCGCATCTGAGTATAAACAAGGGAAGCAACAGGAG
AGGCTCGGCCCGCTCCTCTCGTGTGGGGCAGAGGGTTTCTGAAAGTGTTTTAACTCGGAA
CCAGCAGCAGGAAAAGGTGGATCTTGAAAAAAAATCCCTCAAAGAGCTTTAGAAAGGCCA
AGAATGGCTTCTAAGTCACAGGAGCACAAAAGCGAAGATTTGCAAAGCATCACATTGAGT
GAGGTGGGAAGTTGTCAGATTCTGGGTTTTTCACCAAACCTCCCGTAATGTAAAGATTGC
TTCTAACATATTTAAGTTAAAGCTGCTTGAATAATATTTTGCTGAAGAGCGAGAGATGCA
TTCATCGCCACGGGCACACGGTCCAAAACGACGCGTCCCCGTGACAGCCAGCCGAGGGCG
ACCGGAAACACTGACCCAAAGTCCCCAGACGGCTCCCGACCCTGACGGGAGCCGCCTCTG
GCCACGTCTGCGCCTCTGGTCCCCAGGGCATCGCTGTCACTGCAGGCCGCGCCTGTGCCC
GCAGCACCTGTGTCCCCGTCTTGCATGTTTGAGATGCGCGGGGCCCACATCTGGGCGCCC
TGCTCCCCGTGGGGATGTCAGCTGTGTGGGTCCCTCCGCACACGTCTACACCCGGTGACT
GGTTCCTGCTGTAGTCACGCCAACACCACGACCGTGGCAGAGCTCCCCGAAGGGAAGGCA
GTCTGCGCGTGTGCCGTCATGCTCGCACGCAGCTGTATGGAGCGGGGGCTCCGCGAGCGG
CCATCCTTGCGTGTCCAGCTTCCACATCACATTTGTAATTAAAACCCTTTTAAAAGTGAA
AAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               57-883, gnl|bosTau2|chr13 (36081116-36080272)
               

               
               57-883, gnl|Hg17|chr20 (60302234-60303051)
               

               
               57-883, gnl|Mm7|chr2 (180662400-180663139)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               57-883, gnl|bosTau2|chr13 (36081116-36080272)
               

               
               57-883, gnl|Hg17|chr20 (60302234-60303051)
               

               
               57-883, gnl|Mm7|chr2 (180662400-180663139)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               cte (0.29274)
               

               
               pla (0.267344)
               

               
               fcc (0.197785)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               pla (0.267344)
               

               
               fcc (0.197785)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

	57-883, gnl\|bosTau2\|chr13 (36081116-36080272)
	57-883, gnl\|Hg17\|chr20 (60302234-60303051)
	57-883, gnl\|Mm7\|chr2 (180662400-180663139)

	cte (0.29274)
	pla (0.267344)
	fcc (0.197785)
	fhi (0.169578)
	hyp (0.142837)
	nca (0.136874)
	nmm (0.132802)
	ute (0.132784)
	ebs (0.118301)
	cty (0.10408)