Ss1.1-Pig4-TMW8064G14.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAAGGAGGGGCTGATGGTCTCCCTTCCCTTCGGGAAGATCGGAAAAGTCAATATATTTCA CGTGAGTGACTCCTTCTCAGAGACGCCCCTGGAGGACTTTACCCCACAGAAGATTGTCAG GTGTTATGTCCTGTCCAATGCAGGCCCTGTGTTGACTTTGTCTCTGCGATCATCCAGGAC AAACCCGGACACGAAAAGCAAAATAGTGGATCCCGAGATTAACTCCACCCAGGACATTGA GGAAGGGCAGCTCCTGAGGGGCTACGTGAAGTCCATCCAGCCATCCGGTGTGCTCTTGGG CCTTGGCCCCTCGGTTACGGGTTTGGCCCGCTACTCGCATGTCTCCCAGCACAGCCCGAC CAGGAATGCTCTTTATGACAAATACCTCCCTGAAGGGAAGCTGCTCACAGCCAAGGTCCT AAGCCTGAACCGCCGGGAGAACCTGGTGGAGCTGTCCTTCCTCCCTGGTGACACTGGAAA GCCGGACGTGTTTTCGGCCTCCCCAAGGCTGCCACATCTGAAGCAGGAGGGGAGGGACAC AGAGGCAGAGGAGAGAGAGCACAAAGGAGAAGGCGAGACGGAGGAGAGAAAGAGACAGAA AAGGAAAGAGAAGAGTAGTGGGAAGGAGCAGGAGGAGGCACCGCTGCCCAGCAGGGAGAC GAAAGAGCCCCAGAGGCCACGGGCAAAGAAGCCGGGCAAGCGGCCGCACCCGGAGTCTGC GAGTGAACAGGAAAGCGTGAACAAGAAGCAGAAGAAGGCTGCTCTGTCCGAGGAGGAGGA CAGCGGTGTGGAAGTGTATTACCGGGAAGGAGAAGAGGAGGTGGAAGAGACAGGCATGCG GCCCAAGGAGAAGCAGACCAGGCTGGCAGAAGCGCCCCGGCTGCAGCTGTCTTCTGGCTT CACTTGGGACGTGGGGCTGGACTCCCTGACTCCGGCCTTGCCACCTCACGGAGAGAGCTC AGACAGCGAGGAGGATGAGAAGCCAGAGCAAGCCACGAAGAAGAAAAGCAAGAAGGAAAG GGAGCTGGAGAAGCAGAAGGCAGAGAAAGAGCTGTCCCGCCTTGAGGAGGCACTGATGGA TCCCGGGCGACAGCCGGAATCTGCAGATGACTTTGACCGACTGGTGCTGAGCTCCCCCAA CAGCTCCATCCTGTGGCTGCAATACATGGCCTTCCACCTGCAGGCCACGGAGATCGAGAA GGCCCGGGCTGTGGCCGAGAGGGCGCTCAAGACCATCTCCTTTAGAGAGGAGCAGGAGAA GCTGAACGTGTGGGTGGCCCTGCTGAACCTAGAGAACATGTACGGCTCCCAGGAGTCACT GACCAAGGTCTTCGAGCGGGCCGTGCAGTACAACGAGCCTCTCAAGGTCTTTCTCCATCT GGCCGACATCTACACCAAGTCGGAAAAATTCCAGGAGGCTGGTGAGCTCTACAACCGGAT GCTGAAGCGTTTCAGGCAGGAGAAAGCTGTCTGGATCAAATACGGCGCTTTTCTCCTCCG GAGGGGCCAGGCTGGGGCCAGTCACCGTGTGATGCAGCGGGCCCTTGAGTGCCTGCCTAA GAAAGAGCATGTGGATGTGATTGCCAAGTTTGCCCAGCTTGAGTTCCAGCTGGGAGATGC AGAGCGGGCCAAAGCCATTTTCGAGAACACACTGAGCACCTACCCAAAGCGCACCGATGT CTGGTCAGTCTACATCGACATGATCATCAAGCACGGCAGCCAGAAGGAAGTCCGGGACAT CTTTGAGCGGGTCATTCACCTGAGCCTGGCCCCCAAGCGAATGAAGTTCTTCTTCAAGCG CTACCTGGACTACGAGAAGCAGCATGGCACCGAGAAGGATGTGCAGGCAGTAAAGGCGAA GGCCCTGGAATACGTGGAGGCCAAGAGCTCCTTGGAGGAGGACTAGCGGCCGGCTGGCTC CGAGGGCCAGTGGTAACCCCAGGCACCTGGGCAGTTGAAAAACTGTGTTGCCTGGGGACT CTATTTAAGTGCTGCTTTTTCTGCAGCATCCTTGGGGTGATCTTGTCAAGATGAAAAAGA ACTTGAGATTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAAGGAGGGGCTGATGGTCTCCCTTCCCTTCGGGAAGATCGGAAAAGTCAATATATTTCA CGTGAGTGACTCCTTCTCAGAGACGCCCCTGGAGGACTTTACCCCACAGAAGATTGTCAG GTGTTATGTCCTGTCCAATGCAGGCCCTGTGTTGACTTTGTCTCTGCGATCATCCAGGAC AAACCCGGACACGAAAAGCAAAATAGTGGATCCCGAGATTAACTCCACCCAGGACATTGA GGAAGGGCAGCTCCTGAGGGGCTACGTGAAGTCCATCCAGCCATCCGGTGTGCTCTTGGG CCTTGGCCCCTCGGTTACGGGTTTGGCCCGCTACTCGCATGTCTCCCAGCACAGCCCGAC CAGGAATGCTCTTTATGACAAATACCTCCCTGAAGGGAAGCTGCTCACAGCCAAGGTCCT AAGCCTGAACCGCCGGGAGAACCTGGTGGAGCTGTCCTTCCTCCCTGGTGACACTGGAAA GCCGGACGTGTTTTCGGCCTCCCCAAGGCTGCCACATCTGAAGCAGGAGGGGAGGGACAC AGAGGCAGAGGAGAGAGAGCACAAAGGAGAAGGCGAGACGGAGGAGAGAAAGAGACAGAA AAGGAAAGAGAAGAGTAGTGGGAAGGAGCAGGAGGAGGCACCGCTGCCCAGCAGGGAGAC GAAAGAGCCCCAGAGGCCACGGGCAAAGAAGCCGGGCAAGCGGCCGCACCCGGAGTCTGC GAGTGAACAGGAAAGCGTGAACAAGAAGCAGAAGAAGGCTGCTCTGTCCGAGGAGGAGGA CAGCGGTGTGGAAGTGTATTACCGGGAAGGAGAAGAGGAGGTGGAAGAGACAGGCATGCG GCCCAAGGAGAAGCAGACCAGGCTGGCAGAAGCGCCCCGGCTGCAGCTGTCTTCTGGCTT CACTTGGGACGTGGGGCTGGACTCCCTGACTCCGGCCTTGCCACCTCACGGAGAGAGCTC AGACAGCGAGGAGGATGAGAAGCCAGAGCAAGCCACGAAGAAGAAAAGCAAGAAGGAAAG GGAGCTGGAGAAGCAGAAGGCAGAGAAAGAGCTGTCCCGCCTTGAGGAGGCACTGATGGA TCCCGGGCGACAGCCGGAATCTGCAGATGACTTTGACCGACTGGTGCTGAGCTCCCCCAA CAGCTCCATCCTGTGGCTGCAATACATGGCCTTCCACCTGCAGGCCACGGAGATCGAGAA GGCCCGGGCTGTGGCCGAGAGGGCGCTCAAGACCATCTCCTTTAGAGAGGAGCAGGAGAA GCTGAACGTGTGGGTGGCCCTGCTGAACCTAGAGAACATGTACGGCTCCCAGGAGTCACT GACCAAGGTCTTCGAGCGGGCCGTGCAGTACAACGAGCCTCTCAAGGTCTTTCTCCATCT GGCCGACATCTACACCAAGTCGGAAAAATTCCAGGAGGCTGGTGAGCTCTACAACCGGAT GCTGAAGCGTTTCAGGCAGGAGAAAGCTGTCTGGATCAAATACGGCGCTTTTCTCCTCCG GAGGGGCCAGGCTGGGGCCAGTCACCGTGTGATGCAGCGGGCCCTTGAGTGCCTGCCTAA GAAAGAGCATGTGGATGTGATTGCCAAGTTTGCCCAGCTTGAGTTCCAGCTGGGAGATGC AGAGCGGGCCAAAGCCATTTTCGAGAACACACTGAGCACCTACCCAAAGCGCACCGATGT CTGGTCAGTCTACATCGACATGATCATCAAGCACGGCAGCCAGAAGGAAGTCCGGGACAT CTTTGAGCGGGTCATTCACCTGAGCCTGGCCCCCAAGCGAATGAAGTTCTTCTTCAAGCG CTACCTGGACTACGAGAAGCAGCATGGCACCGAGAAGGATGTGCAGGCAGTAAAGGCGAA GGCCCTGGAATACGTGGAGGCCAAGAGCTCCTTGGAGGAGGACTAGCGGCCGGCTGGCTC CGAGGGCCAGTGGTAACCCCAGGCACCTGGGCAGTTGAAAAACTGTGTTGCCTGGGGACT CTATTTAAGTGCTGCTTTTTCTGCAGCATCCTTGGGGTGATCTTGTCAAGATGAAAAAGA ACTTGAGATTTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 1-122, - strand, RNAz p=0.980152 | |
| 422-2034, + strand, RNAz p=0.638893 | |
| 1036-1195, - strand, RNAz p=0.916821 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-122, - strand, RNAz p=0.980152 | |
| 422-2034, + strand, RNAz p=0.638893 | |
| 1036-1195, - strand, RNAz p=0.916821 |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 1-122, gnl|bosTau2|chr26 (15990917-15990796) | |
| 1-122, gnl|Hg17|chr10 (105184603-105184724) | |
| 1-122, gnl|Mm7|chr19 (47020802-47020923) | |
| 300-421, gnl|bosTau2|chr26 (15987226-15987105) | |
| 300-421, gnl|Hg17|chr10 (105189492-105189613) | |
| 300-421, gnl|Mm7|chr19 (47026802-47026923) | |
| 422-731, gnl|bosTau2|chr26 (15986754-15986451) | |
| 422-731, gnl|Hg17|chr10 (105190035-105190329) | |
| 997-1245, gnl|bosTau2|chr26 (15985152-15984904) | |
| 997-1245, gnl|Hg17|chr10 (105191959-105192207) | |
| 997-1245, gnl|Mm7|chr19 (47028771-47029019) | |
| 1412-1571, gnl|bosTau2|chr26 (15983559-15983400) | |
| 1412-1571, gnl|canFam2|chr28 (18812500-18812678) | |
| 1412-1571, gnl|danRer3|chr1 (50790278-50790101) | |
| 1412-1571, gnl|dasNov1|scaffold_8966 (129199-129354) | |
| 1412-1571, gnl|echTel1|scaffold_323967 (27282-27104) | |
| 1412-1571, gnl|fr1|chrUn (164480622-164480795) | |
| 1412-1571, gnl|galGal2|chr6 (22698005-22698170) | |
| 1412-1571, gnl|hg17|chr10 (105193646-105193825) | |
| 1412-1571, gnl|Hg17|chr10 (105193659-105193818) | |
| 1412-1571, gnl|loxAfr1|scaffold_2052 (17919-17740) | |
| 1412-1571, gnl|mm7|chr19 (47030113-47030289) | |
| 1412-1571, gnl|Mm7|chr19 (47030123-47030282) | |
| 1412-1571, gnl|monDom2|scaffold_14 (59889855-59889676) | |
| 1412-1571, gnl|oryCun1|scaffold_200306 (117131-117309) | |
| 1412-1571, gnl|panTro1|chr8 (106970088-106970267) | |
| 1412-1571, gnl|rheMac2|chr9 (103137126-103137305) | |
| 1412-1571, gnl|rn3|chr1 (252716810-252716988) | |
| 1412-1571, gnl|tetNig1|chr18 (4977669-4977494) | |
| 1412-1571, gnl|xenTro1|scaffold_87 (1333382-1333562) | |
| 1608-2052, gnl|bosTau2|chr14 (46514221-46514674) | |
| 1608-2052, gnl|Hg17|chr10 (105194303-105195461) | |
| 1608-2052, gnl|Mm7|chr19 (47030484-47031479) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-122, gnl|bosTau2|chr26 (15990917-15990796) | |
| 1-122, gnl|Hg17|chr10 (105184603-105184724) | |
| 1-122, gnl|Mm7|chr19 (47020802-47020923) | |
| 300-421, gnl|bosTau2|chr26 (15987226-15987105) | |
| 300-421, gnl|Hg17|chr10 (105189492-105189613) | |
| 300-421, gnl|Mm7|chr19 (47026802-47026923) | |
| 422-731, gnl|bosTau2|chr26 (15986754-15986451) | |
| 422-731, gnl|Hg17|chr10 (105190035-105190329) | |
| 997-1245, gnl|bosTau2|chr26 (15985152-15984904) | |
| 997-1245, gnl|Hg17|chr10 (105191959-105192207) | |
| 997-1245, gnl|Mm7|chr19 (47028771-47029019) | |
| 1412-1571, gnl|bosTau2|chr26 (15983559-15983400) | |
| 1412-1571, gnl|canFam2|chr28 (18812500-18812678) | |
| 1412-1571, gnl|danRer3|chr1 (50790278-50790101) | |
| 1412-1571, gnl|dasNov1|scaffold_8966 (129199-129354) | |
| 1412-1571, gnl|echTel1|scaffold_323967 (27282-27104) | |
| 1412-1571, gnl|fr1|chrUn (164480622-164480795) | |
| 1412-1571, gnl|galGal2|chr6 (22698005-22698170) | |
| 1412-1571, gnl|hg17|chr10 (105193646-105193825) | |
| 1412-1571, gnl|Hg17|chr10 (105193659-105193818) | |
| 1412-1571, gnl|loxAfr1|scaffold_2052 (17919-17740) | |
| 1412-1571, gnl|mm7|chr19 (47030113-47030289) | |
| 1412-1571, gnl|Mm7|chr19 (47030123-47030282) | |
| 1412-1571, gnl|monDom2|scaffold_14 (59889855-59889676) | |
| 1412-1571, gnl|oryCun1|scaffold_200306 (117131-117309) | |
| 1412-1571, gnl|panTro1|chr8 (106970088-106970267) | |
| 1412-1571, gnl|rheMac2|chr9 (103137126-103137305) | |
| 1412-1571, gnl|rn3|chr1 (252716810-252716988) | |
| 1412-1571, gnl|tetNig1|chr18 (4977669-4977494) | |
| 1412-1571, gnl|xenTro1|scaffold_87 (1333382-1333562) | |
| 1608-2052, gnl|bosTau2|chr14 (46514221-46514674) | |
| 1608-2052, gnl|Hg17|chr10 (105194303-105195461) | |
| 1608-2052, gnl|Mm7|chr19 (47030484-47031479) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| duo (0.172801) | |
| csp (0.161186) | |
| spl (0.143184) |