Ss1.1-Pig4-TMW8064H19.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACAAAGGCGCCGCTCGCCGCTCGCAGAGCGTTCCGCGAGCTGCGGGCCGGGCCCCGGCGG AGCGACGCTCCTCCGGTGCGCGTCGCGCCTCTCCGCCGCCGCCGCTGCCTCTCGGTCGCC AAGGCTCGGGCCGTTGAGGGCGAGGTAACAAGTTACGACCTCGGCCAAAGCCGGACGAGC CCACGCGGGATCTCGCCTCCACACCCCCGGCCCGTGGGGACCGCGATGCAGCGAAAGCTC TACGAGGTCTGAGCCTCGCGGCTCCCCGTACCTGACCCCGGCGTGGACACGCGTTCCCGC GCTCGCCGGCGTGAGGGGTCCGCGTGCGCGCCCGCGCAGGCGCACGGAGCCGAGACCGCG CCGCCATGGGCGAGGCTGGCGGCGCTGAGGAGCCGCGCCGGCTCGTGGGGGCGAAGGAAG AGTTTGTCAGGGTGAGGAAGAAGGACCTGGAGCGCCTGACCACCGAGGTGATGCAGATTC GGGACTTCCTGCCCCGGATACTCAACGGGGACGTGCTGGAGAGCTTCCAGAAGCTGAAGA TGCTGGAAAAAAACCTGGAAAGGAAAGAGCAAGAATTGGAGCAACTGCGCATGGATTGTG AGCACTTCAAAGCCCGCCTGGAGTCTGTGCAAGCGGACAGCGTGCGAGAGAAGAAGGAGA AGCTGGCTCTTCGACAGCAGTTGAATGAAGCAAAGCAGCAGCTCCTGCAGCAGGCAGAGT ATTGCACAGAAATGGGGGCAGCAGCCTGTACCATTTTGTGGGGCGTCTCCAGCAGCGAGG AAGTGGTCAAAGCCATCCTGGGAGGCGATAAAGCTGTGAAGTTTTTCAGCATCACTGGTC AGACAATGGAGAGTTTTGTGAAGTCACTGGATGGGGATGCCAAGGAGCTGGACTCGGATG AAAATCAGTTTGTTTTCGCTTTGGCCGGAATCGTCACGAATGTTGCTGCCATAGCTTGTG GCCGTGAGTTCCTGGTCACCTCCAGTCGGGTGCTCCTGGACACCATACTGCAGCTTCTGG GGGACCTGAAGCCAGGACAGTGTACCCGCCTCAAAGTGTTAATGCTGATGGCCCTGTACA ACGTGAGCATCAACCTGAACGGCCTGAAGTACATCAGCGAGAGCCCAGGCTTCATCCCGC TGCTGTGGTGGCTTTTGAGCGATCCGGATGCAGAGGTGTGTCTTCATGTTCTGAGACTCG TCCAGTCTGTGGTTCTGGAGCCAGAAGTCTTCTCCAAGTCGGCCTCGGAGCTGCGCAGCT CGCTGCCCCTGCAGCGTATCCTGGCCATGTCCAAGAGCCGCAACCCCCGCCTGCAGAGCG TGGCCCACGAGCTCCTGGAGGACCTCCGTGCTCTGGAGCGCGACGCCTAGGGCGCTCGGG GGCCCGTCTTCTCCCAGGCCCCCGCTCTGTGTTCGGAACCACCAGCCAGTGCCGTGTGTC CCAGATGGCACGGTGGGGGTGACTAGAGGTGGGTGCGGATGGATACGTGTCTGTGCAGCT TCCTGCTGGAGGGGGCTTGGTCACTTTGCCCCAGGGGAGCCTGAGAAGGGGTCCCGTCTG CGAAGGCCCAGGTCAGCCCCCCCCACAAGGAGGCCTGCCCAGCTCGCCTTCTGCTGCTCA GGGACCTCAGACGGCCGCTCCTCCTTCAACGCCACCCACCCTCCTGGTCAGCAGGTTCCT GAGATACGTTTTCTTGGAAAGCAATTCATTCTTTCTCTAATAACCATAATTAATCTCCCC CAATCCAAGTTGACTTTTAAACCTTTGGCAAACCTGCTATTTCAATGACTGGACATTTGA ATTCTATGTTTTGGTGCTTCTTTTTTGAATAAAGAATGTCAGAAGCGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACAAAGGCGCCGCTCGCCGCTCGCAGAGCGTTCCGCGAGCTGCGGGCCGGGCCCCGGCGG AGCGACGCTCCTCCGGTGCGCGTCGCGCCTCTCCGCCGCCGCCGCTGCCTCTCGGTCGCC AAGGCTCGGGCCGTTGAGGGCGAGGTAACAAGTTACGACCTCGGCCAAAGCCGGACGAGC CCACGCGGGATCTCGCCTCCACACCCCCGGCCCGTGGGGACCGCGATGCAGCGAAAGCTC TACGAGGTCTGAGCCTCGCGGCTCCCCGTACCTGACCCCGGCGTGGACACGCGTTCCCGC GCTCGCCGGCGTGAGGGGTCCGCGTGCGCGCCCGCGCAGGCGCACGGAGCCGAGACCGCG CCGCCATGGGCGAGGCTGGCGGCGCTGAGGAGCCGCGCCGGCTCGTGGGGGCGAAGGAAG AGTTTGTCAGGGTGAGGAAGAAGGACCTGGAGCGCCTGACCACCGAGGTGATGCAGATTC GGGACTTCCTGCCCCGGATACTCAACGGGGACGTGCTGGAGAGCTTCCAGAAGCTGAAGA TGCTGGAAAAAAACCTGGAAAGGAAAGAGCAAGAATTGGAGCAACTGCGCATGGATTGTG AGCACTTCAAAGCCCGCCTGGAGTCTGTGCAAGCGGACAGCGTGCGAGAGAAGAAGGAGA AGCTGGCTCTTCGACAGCAGTTGAATGAAGCAAAGCAGCAGCTCCTGCAGCAGGCAGAGT ATTGCACAGAAATGGGGGCAGCAGCCTGTACCATTTTGTGGGGCGTCTCCAGCAGCGAGG AAGTGGTCAAAGCCATCCTGGGAGGCGATAAAGCTGTGAAGTTTTTCAGCATCACTGGTC AGACAATGGAGAGTTTTGTGAAGTCACTGGATGGGGATGCCAAGGAGCTGGACTCGGATG AAAATCAGTTTGTTTTCGCTTTGGCCGGAATCGTCACGAATGTTGCTGCCATAGCTTGTG GCCGTGAGTTCCTGGTCACCTCCAGTCGGGTGCTCCTGGACACCATACTGCAGCTTCTGG GGGACCTGAAGCCAGGACAGTGTACCCGCCTCAAAGTGTTAATGCTGATGGCCCTGTACA ACGTGAGCATCAACCTGAACGGCCTGAAGTACATCAGCGAGAGCCCAGGCTTCATCCCGC TGCTGTGGTGGCTTTTGAGCGATCCGGATGCAGAGGTGTGTCTTCATGTTCTGAGACTCG TCCAGTCTGTGGTTCTGGAGCCAGAAGTCTTCTCCAAGTCGGCCTCGGAGCTGCGCAGCT CGCTGCCCCTGCAGCGTATCCTGGCCATGTCCAAGAGCCGCAACCCCCGCCTGCAGAGCG TGGCCCACGAGCTCCTGGAGGACCTCCGTGCTCTGGAGCGCGACGCCTAGGGCGCTCGGG GGCCCGTCTTCTCCCAGGCCCCCGCTCTGTGTTCGGAACCACCAGCCAGTGCCGTGTGTC CCAGATGGCACGGTGGGGGTGACTAGAGGTGGGTGCGGATGGATACGTGTCTGTGCAGCT TCCTGCTGGAGGGGGCTTGGTCACTTTGCCCCAGGGGAGCCTGAGAAGGGGTCCCGTCTG CGAAGGCCCAGGTCAGCCCCCCCCACAAGGAGGCCTGCCCAGCTCGCCTTCTGCTGCTCA GGGACCTCAGACGGCCGCTCCTCCTTCAACGCCACCCACCCTCCTGGTCAGCAGGTTCCT GAGATACGTTTTCTTGGAAAGCAATTCATTCTTTCTCTAATAACCATAATTAATCTCCCC CAATCCAAGTTGACTTTTAAACCTTTGGCAAACCTGCTATTTCAATGACTGGACATTTGA ATTCTATGTTTTGGTGCTTCTTTTTTGAATAAAGAATGTCAGAAGCGC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 54 entry(ies) | More info |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
| 143-412, gnl|bosTau2|chr1 (94442773-94443041) | |
| 143-412, gnl|canFam2|chr31 (39975508-39976066) | |
| 143-412, gnl|dasNov1|scaffold_42815 (10087-9626) | |
| 143-412, gnl|hg17|chr21 (43902189-43902720) | |
| 143-412, gnl|Hg17|chr21 (43902631-43902358) | |
| 143-412, gnl|mm7|chr17 (30225619-30226084) | |
| 143-412, gnl|Mm7|chr17 (30226020-30225749) | |
| 143-412, gnl|panTro1|chr22 (44024393-44024940) | |
| 143-412, gnl|rheMac2|chr3 (3071654-3071117) | |
| 143-412, gnl|rn3|chr20 (10452303-10452764) | |
| 655-805, gnl|bosTau2|chr1 (94467058-94467208) | |
| 655-805, gnl|canFam2|chr31 (39950144-39950317) | |
| 655-805, gnl|danRer3|chr1 (33180221-33180394) | |
| 655-805, gnl|echTel1|scaffold_305947 (11270-11097) | |
| 655-805, gnl|galGal2|chr1 (103706092-103706267) | |
| 655-805, gnl|hg17|chr21 (43877576-43877749) | |
| 655-805, gnl|Hg17|chr21 (43877732-43877582) | |
| 655-805, gnl|mm7|chr17 (30205170-30205345) | |
| 655-805, gnl|Mm7|chr17 (30205326-30205176) | |
| 655-805, gnl|monDom2|scaffold_29 (9828086-9828259) | |
| 655-805, gnl|oryCun1|scaffold_100197 (4696-4869) | |
| 655-805, gnl|panTro1|chr22 (43999774-43999947) | |
| 655-805, gnl|rheMac2|chr3 (3093469-3093296) | |
| 655-805, gnl|rn3|chr20 (10430748-10430922) | |
| 807-942, gnl|bosTau2|chr1 (94469489-94469624) | |
| 807-942, gnl|canFam2|chr31 (39948299-39948460) | |
| 807-942, gnl|danRer3|chr1 (33162295-33162458) | |
| 807-942, gnl|dasNov1|scaffold_229387 (751-912) | |
| 807-942, gnl|echTel1|scaffold_305947 (13564-13386) | |
| 807-942, gnl|galGal2|chr1 (103701874-103702029) | |
| 807-942, gnl|hg17|chr21 (43874617-43874787) | |
| 807-942, gnl|Hg17|chr21 (43874763-43874628) | |
| 807-942, gnl|loxAfr1|scaffold_13263 (13957-14126) | |
| 807-942, gnl|mm7|chr17 (30202094-30202258) | |
| 807-942, gnl|Mm7|chr17 (30202232-30202097) | |
| 807-942, gnl|monDom2|scaffold_29 (9822211-9822375) | |
| 807-942, gnl|oryCun1|scaffold_100197 (3802-3964) | |
| 807-942, gnl|panTro1|chr22 (43996820-43996990) | |
| 807-942, gnl|rheMac2|chr3 (3096779-3096609) | |
| 807-942, gnl|rn3|chr20 (10428606-10428774) | |
| 1058-1168, gnl|bosTau2|chr1 (94493167-94493277) | |
| 1058-1168, gnl|canFam2|chr31 (39915523-39915635) | |
| 1058-1168, gnl|dasNov1|scaffold_142126 (4272-4160) | |
| 1058-1168, gnl|echTel1|scaffold_209454 (3189-3301) | |
| 1058-1168, gnl|hg17|chr21 (43836529-43836641) | |
| 1058-1168, gnl|Hg17|chr21 (43836637-43836527) | |
| 1058-1168, gnl|loxAfr1|scaffold_97832 (5277-5165) | |
| 1058-1168, gnl|mm7|chr17 (30178266-30178378) | |
| 1058-1168, gnl|Mm7|chr17 (30178374-30178264) | |
| 1058-1168, gnl|oryCun1|scaffold_156798 (12346-12458) | |
| 1058-1168, gnl|panTro1|chr22 (43958101-43958213) | |
| 1058-1168, gnl|rheMac2|chr3 (3133112-3133000) | |
| 1058-1168, gnl|rn3|chr20 (10404826-10404938) | |
| 1058-1168, gnl|tetNig1|chr3 (7411870-7411758) |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 143-412, gnl|bosTau2|chr1 (94442773-94443041) | |
| 143-412, gnl|canFam2|chr31 (39975508-39976066) | |
| 143-412, gnl|dasNov1|scaffold_42815 (10087-9626) | |
| 143-412, gnl|hg17|chr21 (43902189-43902720) | |
| 143-412, gnl|Hg17|chr21 (43902631-43902358) | |
| 143-412, gnl|mm7|chr17 (30225619-30226084) | |
| 143-412, gnl|Mm7|chr17 (30226020-30225749) | |
| 143-412, gnl|panTro1|chr22 (44024393-44024940) | |
| 143-412, gnl|rheMac2|chr3 (3071654-3071117) | |
| 143-412, gnl|rn3|chr20 (10452303-10452764) | |
| 655-805, gnl|bosTau2|chr1 (94467058-94467208) | |
| 655-805, gnl|canFam2|chr31 (39950144-39950317) | |
| 655-805, gnl|danRer3|chr1 (33180221-33180394) | |
| 655-805, gnl|echTel1|scaffold_305947 (11270-11097) | |
| 655-805, gnl|galGal2|chr1 (103706092-103706267) | |
| 655-805, gnl|hg17|chr21 (43877576-43877749) | |
| 655-805, gnl|Hg17|chr21 (43877732-43877582) | |
| 655-805, gnl|mm7|chr17 (30205170-30205345) | |
| 655-805, gnl|Mm7|chr17 (30205326-30205176) | |
| 655-805, gnl|monDom2|scaffold_29 (9828086-9828259) | |
| 655-805, gnl|oryCun1|scaffold_100197 (4696-4869) | |
| 655-805, gnl|panTro1|chr22 (43999774-43999947) | |
| 655-805, gnl|rheMac2|chr3 (3093469-3093296) | |
| 655-805, gnl|rn3|chr20 (10430748-10430922) | |
| 807-942, gnl|bosTau2|chr1 (94469489-94469624) | |
| 807-942, gnl|canFam2|chr31 (39948299-39948460) | |
| 807-942, gnl|danRer3|chr1 (33162295-33162458) | |
| 807-942, gnl|dasNov1|scaffold_229387 (751-912) | |
| 807-942, gnl|echTel1|scaffold_305947 (13564-13386) | |
| 807-942, gnl|galGal2|chr1 (103701874-103702029) | |
| 807-942, gnl|hg17|chr21 (43874617-43874787) | |
| 807-942, gnl|Hg17|chr21 (43874763-43874628) | |
| 807-942, gnl|loxAfr1|scaffold_13263 (13957-14126) | |
| 807-942, gnl|mm7|chr17 (30202094-30202258) | |
| 807-942, gnl|Mm7|chr17 (30202232-30202097) | |
| 807-942, gnl|monDom2|scaffold_29 (9822211-9822375) | |
| 807-942, gnl|oryCun1|scaffold_100197 (3802-3964) | |
| 807-942, gnl|panTro1|chr22 (43996820-43996990) | |
| 807-942, gnl|rheMac2|chr3 (3096779-3096609) | |
| 807-942, gnl|rn3|chr20 (10428606-10428774) | |
| 1058-1168, gnl|bosTau2|chr1 (94493167-94493277) | |
| 1058-1168, gnl|canFam2|chr31 (39915523-39915635) | |
| 1058-1168, gnl|dasNov1|scaffold_142126 (4272-4160) | |
| 1058-1168, gnl|echTel1|scaffold_209454 (3189-3301) | |
| 1058-1168, gnl|hg17|chr21 (43836529-43836641) | |
| 1058-1168, gnl|Hg17|chr21 (43836637-43836527) | |
| 1058-1168, gnl|loxAfr1|scaffold_97832 (5277-5165) | |
| 1058-1168, gnl|mm7|chr17 (30178266-30178378) | |
| 1058-1168, gnl|Mm7|chr17 (30178374-30178264) | |
| 1058-1168, gnl|oryCun1|scaffold_156798 (12346-12458) | |
| 1058-1168, gnl|panTro1|chr22 (43958101-43958213) | |
| 1058-1168, gnl|rheMac2|chr3 (3133112-3133000) | |
| 1058-1168, gnl|rn3|chr20 (10404826-10404938) | |
| 1058-1168, gnl|tetNig1|chr3 (7411870-7411758) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| cje (0.330469) | |
| cga (0.279096) | |
| ece (0.229305) | |
| cov (0.132153) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (0.330469) | |
| cga (0.279096) | |
| ece (0.229305) | |
| cov (0.132153) |