Non-Coding RNA Search

Ss1.1-Pig4-TMW8064I05.3

Sequence:


               
               GAAACGTGCACGTGCGGGCAGTCGGCATAGGTCATGGCGGCCAGACGCCTTTTCGGGGCT
GCCCGTAGCTGGGCCGCCTGGCGGGCCTGGGAGCTCTCAGATGCCGCCGTTTCTGGGCGA
CTCCATGTACGAAATTACGCCAAAAGACCGGTCATTAAGGGGGGCAAAGGCGGCAAAGGC
GCTGTGGTCGGTGAGGCTCTTAAGGACCCAGAGGTGTGTACAGACCCCTTCCGTCTCACC
ACACATGCCATGGGCGTCAATATCTACAAGGAGGGCCAGGATGTCGTTCTGAAGCCAGAT
TCTGAGTACCCAGAGTGGCTGTTCGAGATGAACGTGGGCCCCCCCAAGAAGCTGGAGGAA
CTGGACCCCGAGACCCGAGAATACTGGCGGCTGCTGCGGAAACACAACATTTGGCGCCAC
AACCGGCTGAGCAAGAACCGAAAGTTCTAGCAGGCGAGGAACCAGAGCACCGGGACCTCC
AAGGACCTGAGGAGACAGAAGGTGTAGGGAGGGGAAGTACCTCCACCTTCCCGCCCCCAC
AACCTTTTATTTTCCGGAAAAGACAGACTTTTCTGAAAACAGAGATCTTCCTCTCACTGG
GGTTCCTGGGTGGTCCCCACAGTGAGGCCGAATTAAGGTCCTGGGGACCAGTAAAGACTT
CTTGGGGCAATTGTTGACAGGCCCTGGATGGTGCTGGGTCATGTCTCACATTGGGGCCAG
GAGGGACTTGGGGCAGGCAGTGGGGAGGGAGGTATACTTCAAACTCTGTGGTTCCATGGC
CCAGCCTCCACTCCCAGTGGTTGGTCTGGCTTCTACAGGTCCATCTTCACTTCCATGCCT
CACTGGGCTTCTTACCCTGATTCTTGGAATTCCTAGCATTGCCCAAGAGGCCCCAACCCC
TGTCCTCACGTTGGGGGTGGATGGTTCTAGCTAAGCCTCTCTGGGTTACAGTGGACTCAC
ACCTGAGCCAAGTCATCTGGAGCAGAATAGTCTGTGAGCTTCAGGAACTGAAATGTCCAG
GGGTAGGTTCTGACTTCAGGCACAGCTGGATCCAGGTGCTCAGCTATGTGGCTCTCTCCA
TTCCTGGAGTCTTTCAACTCCAGTGAGTAGTTCCCTTGGGCAGGTGTGGCTCCTGGCTGA
CACCCCCCTACCCAGTTCAGCAAGCCTAACAGAGGAAAAGGACTTCTCTTTCCTTCCTAC
CAAGGTCACAGGGTTATTTTCATTGGACCATCATTTGATCTGAGGAACCTGGGCCCACCG
ATCATCTTCCTATCCACCCCCACGGGTGTCCACCAGATTGGAGGTAGCTAGAGGGTACAC
CGTGTGTGCACACAGTGCCAGGGCCCTGCTATAGCCATGCCCTCTCCTGGGTAGATACCT
GGATTGGAGATACCTGGGTAACTGCCTGGGGGGCTGGGGCAGAGCAGGGTCCCTGCAGCT
AATTCTGTCTAGTCCCAGGAAAATAAGAGCCCTCATCCTCTTAGGAGGACTCTGCCAGGC
GGATTACCGCACACCTGCCATCCCTGGTGGCCTGCTGTGGGCAGGCTGATTGTTCCAACC
CTCTCGTGGTTCCCCAGGGCTCTCAGGGTAAAAAGCCAAAGTTGGTATAGCCACAGGCCT
CCTCACTTCCTCCTACACACAAGGCAATGTGCTGCCCTAGGGCCCTTGGACATGCTGTGC
CCTCTACCTGGGTTGCTTTTCCCCAGATGTACCTGGGGCTCCCTCTTTCACTTCCAAGTC
TCTGCTCTGATGTCACCTCCGTGAGGCCTCCCCTGACTACCCTATTAAATTGTAACCCTG
CACACAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAACGTGCACGTGCGGGCAGTCGGCATAGGTCATGGCGGCCAGACGCCTTTTCGGGGCT
GCCCGTAGCTGGGCCGCCTGGCGGGCCTGGGAGCTCTCAGATGCCGCCGTTTCTGGGCGA
CTCCATGTACGAAATTACGCCAAAAGACCGGTCATTAAGGGGGGCAAAGGCGGCAAAGGC
GCTGTGGTCGGTGAGGCTCTTAAGGACCCAGAGGTGTGTACAGACCCCTTCCGTCTCACC
ACACATGCCATGGGCGTCAATATCTACAAGGAGGGCCAGGATGTCGTTCTGAAGCCAGAT
TCTGAGTACCCAGAGTGGCTGTTCGAGATGAACGTGGGCCCCCCCAAGAAGCTGGAGGAA
CTGGACCCCGAGACCCGAGAATACTGGCGGCTGCTGCGGAAACACAACATTTGGCGCCAC
AACCGGCTGAGCAAGAACCGAAAGTTCTAGCAGGCGAGGAACCAGAGCACCGGGACCTCC
AAGGACCTGAGGAGACAGAAGGTGTAGGGAGGGGAAGTACCTCCACCTTCCCGCCCCCAC
AACCTTTTATTTTCCGGAAAAGACAGACTTTTCTGAAAACAGAGATCTTCCTCTCACTGG
GGTTCCTGGGTGGTCCCCACAGTGAGGCCGAATTAAGGTCCTGGGGACCAGTAAAGACTT
CTTGGGGCAATTGTTGACAGGCCCTGGATGGTGCTGGGTCATGTCTCACATTGGGGCCAG
GAGGGACTTGGGGCAGGCAGTGGGGAGGGAGGTATACTTCAAACTCTGTGGTTCCATGGC
CCAGCCTCCACTCCCAGTGGTTGGTCTGGCTTCTACAGGTCCATCTTCACTTCCATGCCT
CACTGGGCTTCTTACCCTGATTCTTGGAATTCCTAGCATTGCCCAAGAGGCCCCAACCCC
TGTCCTCACGTTGGGGGTGGATGGTTCTAGCTAAGCCTCTCTGGGTTACAGTGGACTCAC
ACCTGAGCCAAGTCATCTGGAGCAGAATAGTCTGTGAGCTTCAGGAACTGAAATGTCCAG
GGGTAGGTTCTGACTTCAGGCACAGCTGGATCCAGGTGCTCAGCTATGTGGCTCTCTCCA
TTCCTGGAGTCTTTCAACTCCAGTGAGTAGTTCCCTTGGGCAGGTGTGGCTCCTGGCTGA
CACCCCCCTACCCAGTTCAGCAAGCCTAACAGAGGAAAAGGACTTCTCTTTCCTTCCTAC
CAAGGTCACAGGGTTATTTTCATTGGACCATCATTTGATCTGAGGAACCTGGGCCCACCG
ATCATCTTCCTATCCACCCCCACGGGTGTCCACCAGATTGGAGGTAGCTAGAGGGTACAC
CGTGTGTGCACACAGTGCCAGGGCCCTGCTATAGCCATGCCCTCTCCTGGGTAGATACCT
GGATTGGAGATACCTGGGTAACTGCCTGGGGGGCTGGGGCAGAGCAGGGTCCCTGCAGCT
AATTCTGTCTAGTCCCAGGAAAATAAGAGCCCTCATCCTCTTAGGAGGACTCTGCCAGGC
GGATTACCGCACACCTGCCATCCCTGGTGGCCTGCTGTGGGCAGGCTGATTGTTCCAACC
CTCTCGTGGTTCCCCAGGGCTCTCAGGGTAAAAAGCCAAAGTTGGTATAGCCACAGGCCT
CCTCACTTCCTCCTACACACAAGGCAATGTGCTGCCCTAGGGCCCTTGGACATGCTGTGC
CCTCTACCTGGGTTGCTTTTCCCCAGATGTACCTGGGGCTCCCTCTTTCACTTCCAAGTC
TCTGCTCTGATGTCACCTCCGTGAGGCCTCCCCTGACTACCCTATTAAATTGTAACCCTG
CACACAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61878487|ref|XP_589353.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61878487|ref|XP_589353.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               436-691, - strand, RNAz p=0.999855
               

               
               1105-1278, + strand, RNAz p=0.995114

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               436-691, - strand, RNAz p=0.999855
               

               
               1105-1278, + strand, RNAz p=0.995114

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               1-151, gnl|bosTau2|chr7 (17641924-17642074)
               

               
               1-151, gnl|Hg17|chr19 (3713665-3713816)
               

               
               1-151, gnl|Mm7|chr10 (81058920-81058770)
               


               
               317-1425, gnl|bosTau2|chr7 (17643558-17644672)
               

               
               317-1425, gnl|Hg17|chr19 (3718258-3719523)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-151, gnl|bosTau2|chr7 (17641924-17642074)
               

               
               1-151, gnl|Hg17|chr19 (3713665-3713816)
               

               
               1-151, gnl|Mm7|chr10 (81058920-81058770)
               


               
               317-1425, gnl|bosTau2|chr7 (17643558-17644672)
               

               
               317-1425, gnl|Hg17|chr19 (3718258-3719523)

Expressed library(ies): 19 entry(ies)

More info

Expressed library(ies): 19 entry(ies)

Help | Less info


               
               cli (0.305623)
               

               
               med (0.232504)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               cbr (0.127975)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.305623)
               

               
               med (0.232504)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               cbr (0.127975)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	436-691, - strand, RNAz p=0.999855
	1105-1278, + strand, RNAz p=0.995114

	1-151, gnl\|bosTau2\|chr7 (17641924-17642074)
	1-151, gnl\|Hg17\|chr19 (3713665-3713816)
	1-151, gnl\|Mm7\|chr10 (81058920-81058770)

	317-1425, gnl\|bosTau2\|chr7 (17643558-17644672)
	317-1425, gnl\|Hg17\|chr19 (3718258-3719523)

	cli (0.305623)
	med (0.232504)
	mas (0.210305)
	fcc (0.197785)
	nep (0.183925)
	mcp (0.170648)
	nje (0.16592)
	csp (0.161186)
	cag (0.151194)
	hlv (0.139256)
	nca (0.136874)
	pla (0.133672)
	cov (0.132153)
	cbr (0.127975)
	eep (0.122564)
	cly (0.120642)
	cty (0.10408)
	jej (0.0989218)
	eje (0.0988338)