Ss1.1-Pig4-TMW8064I10.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGCGGAAAAGTGCCCCTCCAGATCTGGTGAAGTTTTGCGGGAATCAAAGATCTTATTTT GCTATGTGGCCGGATTTTCTTACTGCTTGCTCTTCTTACATTAATTATTTCGGTGGCTAC CTCATGGATTAACTCGTTTAAATCTACCCAAGTTTATCTGAAAGAAGAAGAAGAAGAGAA GAATGAGAAAAAGCAAAAACTTGTGAGGAAAAAACAACAAGAGGCACAAGGTGAAAAGGC CAGCAGATACATAGAGAATGTTCTAAAACCTTACCAGGAAATGAAATTGAAAAGGCTGGA AGAACGCTTTTATCAGATGACGGGTGAAACCTGGAAGTTAAGCAACGGACATAAACTTGG GGGCGATGAAGATTTGGTGCTTGAAAGTGAGAGTCATACATCTTCTGAAACATCAAACAG AGAAGCAGCAAAGAGACGAAACTTGCCTAAGCTTTTAACCAGAGTTTCACCACCTGCTGC ACAGCCCACGCAGAAGAAGGTTCTCGATTTACCTGAAGAACCTCCTGAAACAGCTGAAGA AGTCGTGACTGTCGCTCTCCGATGTCCCAGTGGGCGTGTCCTGAGGAGAAGGTTTTTTAA GTCTTGCAGTTCACAGGTCTTGTTTGACTGGATGATGAAAATTGGGTACCACCCATCCCT ATACAGCCTTGCCACCTCCTTTCCCAGAAGGCTTCTGGAAGTGGAGGAAGGCTGGTCCCT GCAGGACCTAGGAATAACCGTGGATACCATACTCAACGTGGAAGAGAAGGAGCAGAGCAG CTAGTTAAGAAATGCAGACCATCAGTTCTGCATGAAATCAGTTGTGCTGTGGCCTTACAG GACAATAAAGGATTCACATTAAAATTGTGCCATACCTTGACTTAGCTCAAGGCAGTAAAC ACTTTTTTTTTTTCATTCTTTTTTTGGCCATCCTTGAAGCATACGGAGTTACCAGGCTAG GGGTCAGATCTGAGCCGCAGTTGTGACCTACATACAGTAGCTGTGGCAACGAGATCCTTT AACGCACCACGCCAGGCCGGGGATCAAAACTGCATCCTGGCACTGCAGAGATGCTGCCTC TCCTGTTGCGCCCCAGTGGGAATTCCCTTAAACACTTTAGTGTTGATCTCCATGGGAACA TAAATGGACATAAAGAATTAGAAGAGGATTGCTCTCTTGATATGATCATTTTGCCATCTT ATAATAAACCAAATGAGAACTTGGTAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGCGGAAAAGTGCCCCTCCAGATCTGGTGAAGTTTTGCGGGAATCAAAGATCTTATTTT GCTATGTGGCCGGATTTTCTTACTGCTTGCTCTTCTTACATTAATTATTTCGGTGGCTAC CTCATGGATTAACTCGTTTAAATCTACCCAAGTTTATCTGAAAGAAGAAGAAGAAGAGAA GAATGAGAAAAAGCAAAAACTTGTGAGGAAAAAACAACAAGAGGCACAAGGTGAAAAGGC CAGCAGATACATAGAGAATGTTCTAAAACCTTACCAGGAAATGAAATTGAAAAGGCTGGA AGAACGCTTTTATCAGATGACGGGTGAAACCTGGAAGTTAAGCAACGGACATAAACTTGG GGGCGATGAAGATTTGGTGCTTGAAAGTGAGAGTCATACATCTTCTGAAACATCAAACAG AGAAGCAGCAAAGAGACGAAACTTGCCTAAGCTTTTAACCAGAGTTTCACCACCTGCTGC ACAGCCCACGCAGAAGAAGGTTCTCGATTTACCTGAAGAACCTCCTGAAACAGCTGAAGA AGTCGTGACTGTCGCTCTCCGATGTCCCAGTGGGCGTGTCCTGAGGAGAAGGTTTTTTAA GTCTTGCAGTTCACAGGTCTTGTTTGACTGGATGATGAAAATTGGGTACCACCCATCCCT ATACAGCCTTGCCACCTCCTTTCCCAGAAGGCTTCTGGAAGTGGAGGAAGGCTGGTCCCT GCAGGACCTAGGAATAACCGTGGATACCATACTCAACGTGGAAGAGAAGGAGCAGAGCAG CTAGTTAAGAAATGCAGACCATCAGTTCTGCATGAAATCAGTTGTGCTGTGGCCTTACAG GACAATAAAGGATTCACATTAAAATTGTGCCATACCTTGACTTAGCTCAAGGCAGTAAAC ACTTTTTTTTTTTCATTCTTTTTTTGGCCATCCTTGAAGCATACGGAGTTACCAGGCTAG GGGTCAGATCTGAGCCGCAGTTGTGACCTACATACAGTAGCTGTGGCAACGAGATCCTTT AACGCACCACGCCAGGCCGGGGATCAAAACTGCATCCTGGCACTGCAGAGATGCTGCCTC TCCTGTTGCGCCCCAGTGGGAATTCCCTTAAACACTTTAGTGTTGATCTCCATGGGAACA TAAATGGACATAAAGAATTAGAAGAGGATTGCTCTCTTGATATGATCATTTTGCCATCTT ATAATAAACCAAATGAGAACTTGGTAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 615-733, + strand, RNAz p=0.820515 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 615-733, + strand, RNAz p=0.820515 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 41-164, gnl|bosTau2|chr27 (14352923-14352800) | |
| 41-164, gnl|canFam2|chr1 (14506778-14506681) | |
| 41-164, gnl|echTel1|scaffold_283009 (38718-38817) | |
| 41-164, gnl|hg17|chr18 (61916395-61916490) | |
| 41-164, gnl|Hg17|chr8 (30728454-30728577) | |
| 41-164, gnl|loxAfr1|scaffold_142341 (4346-4445) | |
| 41-164, gnl|Mm7|chr8 (32406472-32406349) | |
| 41-164, gnl|oryCun1|scaffold_204293 (6737-6827) | |
| 41-164, gnl|panTro1|chr17 (58776660-58776755) | |
| 41-164, gnl|rheMac2|chr18 (59521682-59521781) | |
| 41-164, gnl|rn3|chr16 (62313890-62313989) | |
| 232-362, gnl|bosTau2|chr27 (14350295-14350165) | |
| 232-362, gnl|Hg17|chr8 (30731719-30731847) | |
| 232-362, gnl|Mm7|chr8 (32401503-32401370) | |
| 615-904, gnl|bosTau2|chr27 (14340579-14340274) | |
| 615-904, gnl|canFam2|chr16 (36544562-36544261) | |
| 615-904, gnl|dasNov1|scaffold_71710 (1187-884) | |
| 615-904, gnl|echTel1|scaffold_283009 (56691-56971) | |
| 615-904, gnl|hg17|chr8 (30743253-30743560) | |
| 615-904, gnl|Hg17|chr8 (30743283-30743570) | |
| 615-904, gnl|mm7|chr8 (32389598-32389336) | |
| 615-904, gnl|oryCun1|scaffold_180997 (12948-13192) | |
| 615-904, gnl|panTro1|chr7_random (21108406-21108713) | |
| 615-904, gnl|rheMac2|chr18 (59521851-59522142) | |
| 615-904, gnl|rn3|chr16 (62328683-62328944) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 41-164, gnl|bosTau2|chr27 (14352923-14352800) | |
| 41-164, gnl|canFam2|chr1 (14506778-14506681) | |
| 41-164, gnl|echTel1|scaffold_283009 (38718-38817) | |
| 41-164, gnl|hg17|chr18 (61916395-61916490) | |
| 41-164, gnl|Hg17|chr8 (30728454-30728577) | |
| 41-164, gnl|loxAfr1|scaffold_142341 (4346-4445) | |
| 41-164, gnl|Mm7|chr8 (32406472-32406349) | |
| 41-164, gnl|oryCun1|scaffold_204293 (6737-6827) | |
| 41-164, gnl|panTro1|chr17 (58776660-58776755) | |
| 41-164, gnl|rheMac2|chr18 (59521682-59521781) | |
| 41-164, gnl|rn3|chr16 (62313890-62313989) | |
| 232-362, gnl|bosTau2|chr27 (14350295-14350165) | |
| 232-362, gnl|Hg17|chr8 (30731719-30731847) | |
| 232-362, gnl|Mm7|chr8 (32401503-32401370) | |
| 615-904, gnl|bosTau2|chr27 (14340579-14340274) | |
| 615-904, gnl|canFam2|chr16 (36544562-36544261) | |
| 615-904, gnl|dasNov1|scaffold_71710 (1187-884) | |
| 615-904, gnl|echTel1|scaffold_283009 (56691-56971) | |
| 615-904, gnl|hg17|chr8 (30743253-30743560) | |
| 615-904, gnl|Hg17|chr8 (30743283-30743570) | |
| 615-904, gnl|mm7|chr8 (32389598-32389336) | |
| 615-904, gnl|oryCun1|scaffold_180997 (12948-13192) | |
| 615-904, gnl|panTro1|chr7_random (21108406-21108713) | |
| 615-904, gnl|rheMac2|chr18 (59521851-59522142) | |
| 615-904, gnl|rn3|chr16 (62328683-62328944) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| cbl (0.344392) | |
| lun (0.300978) | |
| cte (0.29274) | |
| mgp (0.230681) | |
| cty (0.20816) | |
| jej (0.197844) | |
| cje (0.165235) | |
| cli (0.152812) | |
| ski (0.146735) | |
| liv (0.146284) | |
| cst (0.140036) | |
| che (0.136314) | |
| cly (0.120642) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (0.344392) | |
| lun (0.300978) | |
| cte (0.29274) | |
| mgp (0.230681) | |
| cty (0.20816) | |
| jej (0.197844) | |
| cje (0.165235) | |
| cli (0.152812) | |
| ski (0.146735) | |
| liv (0.146284) | |
| cst (0.140036) | |
| che (0.136314) | |
| cly (0.120642) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |