Ss1.1-Pig4-TMW8064I18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGGAGTGGGAGGACCACAAGCACCATTCTCTCCGAGTCCGAGTCCCGGGGGCTCCCGGA GGCGGCTGGCAGGGCTCTCGCTGCTGGCCTGGCTGTAGTGCATGGCTGCCCAGCTGCTTG CTCAGGAGCCAGACCGAGTGAGGAGGAGGAAGATCTCTGAGAAGGGTCGAGGGAGTCAAG CAGGTTCCGTCTTGGCACCCCTGGAAGCTTCAACTCTGGAGGCCATGGGTCGGAAGGAAG ACGAGGACTGCAGTTCCTGGAAGAAACAGACCACCAACATCCGGAAAACCTTCATCTTCA TGGAAGTGCTGGGATCAGGTGCTTTTTCAGAAGTCTTCCTGGTGAAGCAAAGGGTAACTG GGAAACTCTTTGCCCTCAAGTGCATCAAAAAGTCACCGGCCTTCCGGGACAGCAGCCTGG AGAATGAGATCGCCGTGTTGAAAAAGATCAAGCACGAGAACATCGTGACCTTGGAGGACA TCTATGAGAGCTCCACTCACTACTACCTGGTCATGCAGCTGGTTTCCGGTGGGGAGCTCT TTGACCGGATCCTGGAACGGGGTGTCTACACAGAGAGGGATGCCAGCCTTGTGATTCGGC AGGTCTTGGCAGCAGTGAAATACCTCCACGAGAACGGCATCGTCCACAGAGACTTAAAGC CTGAAAACCTGCTGTACCTCACCCCTGAGGAGAATTCTAAGATCATGATTACCGACTTTG GTCTTTCCAAGATGGAGCAGAGTGGTGTCATGTCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGGAGTGGGAGGACCACAAGCACCATTCTCTCCGAGTCCGAGTCCCGGGGGCTCCCGGA GGCGGCTGGCAGGGCTCTCGCTGCTGGCCTGGCTGTAGTGCATGGCTGCCCAGCTGCTTG CTCAGGAGCCAGACCGAGTGAGGAGGAGGAAGATCTCTGAGAAGGGTCGAGGGAGTCAAG CAGGTTCCGTCTTGGCACCCCTGGAAGCTTCAACTCTGGAGGCCATGGGTCGGAAGGAAG ACGAGGACTGCAGTTCCTGGAAGAAACAGACCACCAACATCCGGAAAACCTTCATCTTCA TGGAAGTGCTGGGATCAGGTGCTTTTTCAGAAGTCTTCCTGGTGAAGCAAAGGGTAACTG GGAAACTCTTTGCCCTCAAGTGCATCAAAAAGTCACCGGCCTTCCGGGACAGCAGCCTGG AGAATGAGATCGCCGTGTTGAAAAAGATCAAGCACGAGAACATCGTGACCTTGGAGGACA TCTATGAGAGCTCCACTCACTACTACCTGGTCATGCAGCTGGTTTCCGGTGGGGAGCTCT TTGACCGGATCCTGGAACGGGGTGTCTACACAGAGAGGGATGCCAGCCTTGTGATTCGGC AGGTCTTGGCAGCAGTGAAATACCTCCACGAGAACGGCATCGTCCACAGAGACTTAAAGC CTGAAAACCTGCTGTACCTCACCCCTGAGGAGAATTCTAAGATCATGATTACCGACTTTG GTCTTTCCAAGATGGAGCAGAGTGGTGTCATGTCCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 317-446, + strand, RNAz p=0.863061 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 317-446, + strand, RNAz p=0.863061 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 195-316, gnl|bosTau2|chr16 (50615697-50615818) | |
| 195-316, gnl|Hg17|chr1 (206156694-206156815) | |
| 195-316, gnl|Mm7|chr1 (192914786-192914665) | |
| 317-446, gnl|bosTau2|chr16 (50621684-50621813) | |
| 317-446, gnl|canFam2|chr7 (11214801-11214893) | |
| 317-446, gnl|danRer3|chr23 (52456478-52456388) | |
| 317-446, gnl|dasNov1|scaffold_146347 (4707-4615) | |
| 317-446, gnl|echTel1|scaffold_220201 (4159-4067) | |
| 317-446, gnl|fr1|chrUn (207802626-207802716) | |
| 317-446, gnl|galGal2|chr26 (1688203-1688294) | |
| 317-446, gnl|hg17|chr1 (206161721-206161813) | |
| 317-446, gnl|Hg17|chr1 (206161723-206161852) | |
| 317-446, gnl|loxAfr1|scaffold_6769 (7494-7586) | |
| 317-446, gnl|mm7|chr1 (192912503-192912411) | |
| 317-446, gnl|Mm7|chr1 (192912499-192912370) | |
| 317-446, gnl|monDom2|scaffold_13 (12567792-12567884) | |
| 317-446, gnl|oryCun1|scaffold_203548 (33578-33493) | |
| 317-446, gnl|panTro1|chr1 (189776056-189776148) | |
| 317-446, gnl|rheMac2|chr1 (160803026-160802934) | |
| 317-446, gnl|rn3|chr13 (109395374-109395282) | |
| 317-446, gnl|tetNig1|chrUn_random (5110700-5110790) | |
| 317-446, gnl|xenTro1|scaffold_138 (1283377-1283469) | |
| 522-659, gnl|bosTau2|chr16 (50627280-50627417) | |
| 522-659, gnl|canFam2|chr7 (11220343-11220516) | |
| 522-659, gnl|danRer3|chr23 (52456057-52455892) | |
| 522-659, gnl|dasNov1|scaffold_138512 (328-162) | |
| 522-659, gnl|echTel1|scaffold_276964 (40596-40767) | |
| 522-659, gnl|fr1|chrUn (207803021-207803191) | |
| 522-659, gnl|galGal2|chr26 (1688942-1689112) | |
| 522-659, gnl|hg17|chr1 (206167245-206167420) | |
| 522-659, gnl|Hg17|chr1 (206167277-206167414) | |
| 522-659, gnl|loxAfr1|scaffold_6769 (13949-14120) | |
| 522-659, gnl|mm7|chr1 (192907768-192907607) | |
| 522-659, gnl|Mm7|chr1 (192907745-192907608) | |
| 522-659, gnl|monDom2|scaffold_13 (12572625-12572790) | |
| 522-659, gnl|oryCun1|scaffold_209827 (47554-47727) | |
| 522-659, gnl|panTro1|chr1 (189781572-189781744) | |
| 522-659, gnl|rheMac2|chr1 (160797490-160797318) | |
| 522-659, gnl|rn3|chr13 (109390324-109390163) | |
| 522-659, gnl|tetNig1|chrUn_random (5111101-5111257) | |
| 522-659, gnl|xenTro1|scaffold_138 (1285451-1285594) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 195-316, gnl|bosTau2|chr16 (50615697-50615818) | |
| 195-316, gnl|Hg17|chr1 (206156694-206156815) | |
| 195-316, gnl|Mm7|chr1 (192914786-192914665) | |
| 317-446, gnl|bosTau2|chr16 (50621684-50621813) | |
| 317-446, gnl|canFam2|chr7 (11214801-11214893) | |
| 317-446, gnl|danRer3|chr23 (52456478-52456388) | |
| 317-446, gnl|dasNov1|scaffold_146347 (4707-4615) | |
| 317-446, gnl|echTel1|scaffold_220201 (4159-4067) | |
| 317-446, gnl|fr1|chrUn (207802626-207802716) | |
| 317-446, gnl|galGal2|chr26 (1688203-1688294) | |
| 317-446, gnl|hg17|chr1 (206161721-206161813) | |
| 317-446, gnl|Hg17|chr1 (206161723-206161852) | |
| 317-446, gnl|loxAfr1|scaffold_6769 (7494-7586) | |
| 317-446, gnl|mm7|chr1 (192912503-192912411) | |
| 317-446, gnl|Mm7|chr1 (192912499-192912370) | |
| 317-446, gnl|monDom2|scaffold_13 (12567792-12567884) | |
| 317-446, gnl|oryCun1|scaffold_203548 (33578-33493) | |
| 317-446, gnl|panTro1|chr1 (189776056-189776148) | |
| 317-446, gnl|rheMac2|chr1 (160803026-160802934) | |
| 317-446, gnl|rn3|chr13 (109395374-109395282) | |
| 317-446, gnl|tetNig1|chrUn_random (5110700-5110790) | |
| 317-446, gnl|xenTro1|scaffold_138 (1283377-1283469) | |
| 522-659, gnl|bosTau2|chr16 (50627280-50627417) | |
| 522-659, gnl|canFam2|chr7 (11220343-11220516) | |
| 522-659, gnl|danRer3|chr23 (52456057-52455892) | |
| 522-659, gnl|dasNov1|scaffold_138512 (328-162) | |
| 522-659, gnl|echTel1|scaffold_276964 (40596-40767) | |
| 522-659, gnl|fr1|chrUn (207803021-207803191) | |
| 522-659, gnl|galGal2|chr26 (1688942-1689112) | |
| 522-659, gnl|hg17|chr1 (206167245-206167420) | |
| 522-659, gnl|Hg17|chr1 (206167277-206167414) | |
| 522-659, gnl|loxAfr1|scaffold_6769 (13949-14120) | |
| 522-659, gnl|mm7|chr1 (192907768-192907607) | |
| 522-659, gnl|Mm7|chr1 (192907745-192907608) | |
| 522-659, gnl|monDom2|scaffold_13 (12572625-12572790) | |
| 522-659, gnl|oryCun1|scaffold_209827 (47554-47727) | |
| 522-659, gnl|panTro1|chr1 (189781572-189781744) | |
| 522-659, gnl|rheMac2|chr1 (160797490-160797318) | |
| 522-659, gnl|rn3|chr13 (109390324-109390163) | |
| 522-659, gnl|tetNig1|chrUn_random (5111101-5111257) | |
| 522-659, gnl|xenTro1|scaffold_138 (1285451-1285594) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pgl (0.118483) |