Non-Coding RNA Search

Ss1.1-Pig4-TMW8064I20.3

Sequence:


               
               CCCCCCCCCCCCCCCGCCTGAGAGAGGGGCCTTGATATTTATATTTAAGAAATTAAGATA
ATAATATTAATAATGATGAGAGGAGGGCCGGCCACAGGGACTTGGCCTTCCCCTGGGCCT
CGGGCCCACCTCGCCTTGGGGCCAGGCTGGAAGTCCACCTCGGGACCCATCACCCATGGC
TGTGGCGGCCCCGCCCTCTGTAATTTTATAGAGAGTTTGAGCTGAAGCTTCGTATATTTA
ATTTATTTTCTTAAACAAGAAAATGTGCATCCTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCCCCCCCCCCCCGCCTGAGAGAGGGGCCTTGATATTTATATTTAAGAAATTAAGATA
ATAATATTAATAATGATGAGAGGAGGGCCGGCCACAGGGACTTGGCCTTCCCCTGGGCCT
CGGGCCCACCTCGCCTTGGGGCCAGGCTGGAAGTCCACCTCGGGACCCATCACCCATGGC
TGTGGCGGCCCCGCCCTCTGTAATTTTATAGAGAGTTTGAGCTGAAGCTTCGTATATTTA
ATTTATTTTCTTAAACAAGAAAATGTGCATCCTTTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               44-185, + strand, RNAz p=0.981267

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               44-185, + strand, RNAz p=0.981267

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_001004356, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_001004356, +

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               7-275, gnl|bosTau2|chr6 (63521934-63521664)
               

               
               7-275, gnl|canFam2|chr3 (94331646-94331319)
               

               
               7-275, gnl|echTel1|scaffold_237355 (799-466)
               

               
               7-275, gnl|hg17|chr4 (1010073-1010426)
               

               
               7-275, gnl|Hg17|chr4 (1010227-1010509)
               

               
               7-275, gnl|loxAfr1|scaffold_53463 (7911-8280)
               

               
               7-275, gnl|mm7|chr5 (107887533-107887796)
               

               
               7-275, gnl|Mm7|chr5 (107887631-107887877)
               

               
               7-275, gnl|monDom2|scaffold_10 (47151051-47150632)
               

               
               7-275, gnl|panTro1|chr3 (1090709-1091050)
               

               
               7-275, gnl|rheMac2|chr1 (2935766-2935440)
               

               
               7-275, gnl|rn3|chr14 (1551250-1550979)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-275, gnl|bosTau2|chr6 (63521934-63521664)
               

               
               7-275, gnl|canFam2|chr3 (94331646-94331319)
               

               
               7-275, gnl|echTel1|scaffold_237355 (799-466)
               

               
               7-275, gnl|hg17|chr4 (1010073-1010426)
               

               
               7-275, gnl|Hg17|chr4 (1010227-1010509)
               

               
               7-275, gnl|loxAfr1|scaffold_53463 (7911-8280)
               

               
               7-275, gnl|mm7|chr5 (107887533-107887796)
               

               
               7-275, gnl|Mm7|chr5 (107887631-107887877)
               

               
               7-275, gnl|monDom2|scaffold_10 (47151051-47150632)
               

               
               7-275, gnl|panTro1|chr3 (1090709-1091050)
               

               
               7-275, gnl|rheMac2|chr1 (2935766-2935440)
               

               
               7-275, gnl|rn3|chr14 (1551250-1550979)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cli (0.152812)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.152812)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)

	7-275, gnl\|bosTau2\|chr6 (63521934-63521664)
	7-275, gnl\|canFam2\|chr3 (94331646-94331319)
	7-275, gnl\|echTel1\|scaffold_237355 (799-466)
	7-275, gnl\|hg17\|chr4 (1010073-1010426)
	7-275, gnl\|Hg17\|chr4 (1010227-1010509)
	7-275, gnl\|loxAfr1\|scaffold_53463 (7911-8280)
	7-275, gnl\|mm7\|chr5 (107887533-107887796)
	7-275, gnl\|Mm7\|chr5 (107887631-107887877)
	7-275, gnl\|monDom2\|scaffold_10 (47151051-47150632)
	7-275, gnl\|panTro1\|chr3 (1090709-1091050)
	7-275, gnl\|rheMac2\|chr1 (2935766-2935440)
	7-275, gnl\|rn3\|chr14 (1551250-1550979)