Non-Coding RNA Search

Ss1.1-Pig4-TMW8064I20.5

Sequence:


               
               CCTGGACACACATACGTGCATGACATACCTCTGGACACACACACAGTCTCACACACACAC
ACACACACACACACACACGCACACACACACACTCGGACTAAGAAGCCCGTGGGAAGGTCC
GTGTGGTAACTTTGCAGTGCGCATGTAGCAATGGGCTTGCTCATGAAGGAACCCCTTGGC
CCCATGAGAAGGATTTCACTGAGGCCACGGTCCCCCCCCACCCGGTTCCTGGCAGGAGAT
CTGAGAGGCACCCTGGCTTTGCAAACCAAAAAACTCCGACCCCTTCCCTACGCCTGCCTG
CCTCTGTCCCTGCCCAGGCTATTTTTGTCACCACCTGTCCTGGGTGTCCAGGAGTCCACC
AGTACCCTGGGCAGGGGGGTCTGGCGGAGCAGTCCTAGGCCCTGTCCTGAGAGGCCGGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGGACACACATACGTGCATGACATACCTCTGGACACACACACAGTCTCACACACACAC
ACACACACACACACACACGCACACACACACACTCGGACTAAGAAGCCCGTGGGAAGGTCC
GTGTGGTAACTTTGCAGTGCGCATGTAGCAATGGGCTTGCTCATGAAGGAACCCCTTGGC
CCCATGAGAAGGATTTCACTGAGGCCACGGTCCCCCCCCACCCGGTTCCTGGCAGGAGAT
CTGAGAGGCACCCTGGCTTTGCAAACCAAAAAACTCCGACCCCTTCCCTACGCCTGCCTG
CCTCTGTCCCTGCCCAGGCTATTTTTGTCACCACCTGTCCTGGGTGTCCAGGAGTCCACC
AGTACCCTGGGCAGGGGGGTCTGGCGGAGCAGTCCTAGGCCCTGTCCTGAGAGGCCGGAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               288-407, + strand, RNAz p=0.962109

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               288-407, + strand, RNAz p=0.962109

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_001004356, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_001004356, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               51-420, gnl|bosTau2|chr6 (63522327-63521965)
               

               
               51-420, gnl|Hg17|chr4 (1009872-1010196)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               51-420, gnl|bosTau2|chr6 (63522327-63521965)
               

               
               51-420, gnl|Hg17|chr4 (1009872-1010196)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               hea (0.204499)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               cov (0.132153)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               cov (0.132153)

	51-420, gnl\|bosTau2\|chr6 (63522327-63521965)
	51-420, gnl\|Hg17\|chr4 (1009872-1010196)

	hea (0.204499)
	cst (0.140036)
	nca (0.136874)
	ssp (0.13552)
	cov (0.132153)