Non-Coding RNA Search

Ss1.1-Pig4-TMW8064I21.3

Sequence:


               
               CCAAAGACTTGGGGGCCAGGCACTTCTGTCTTGTCACCTGTTGACATTTGGTGTCGAGTG
CATGGGTGGCTCCTGGACTACGTGTCTGCCCATCGACACGGTGGGGCTGGATTTGTTTCT
CAGGCAATCCTGTATTTTAATTTTAGATGTATTTCCTGAAGCATATTTTTCATAGAATGT
AGCGTGTAAATAGCTTTTTAAATAACTTCTTTTTTATAAGAGTAAAAGTATCTTTAGGAA
TTTCTTTCTATAGAGTCCTTCATTAACATTTATACGAGTTTTTTGCGGAGTATGATGAAC
AGTTGGGTTTCTGATGCTTTTCCTTTTCTTTGTATTATTATGGTTATTATTATTATTTTT
TCTTTTAGGAACTAAGGTATTGCCTGAAAAACAAGTGATGTCTGTGCAGCCTTATATCTG
TCTTTACAGAAGCAAACAGTACACAAAAGATCTATTTCAGACACATTTGAAGAGGAATCT
TCAACTTGAATACCAGCTCTTTGTTTCCTTCTTGTTGATGAAGGGGGTGGGGGTACAGTT
ATTTTACTAGCACCTTGTGAAGTGTTTCTGTGTTTTGTGATGCTGTAATTTATTAATGTT
TGTAGCTTTTTATATTTGTACATTTCTTATGAGCTTTGTTTATATGCCCAGCCCTGGGTG
TTCTGTCCACAAGGAGAGGCAGCTTCGCGTAGGCCTTGCCACCCTAGCTCATCCTTTGGA
GGTGGGGGACGCAGCCCCGGGTCCCAGAGGCTGGGAGGGGCGAGCCTCACGGGGCCCTGA
CTGTTCTGACCCGGCGTTTTGAAGGTTTCCTTTCCTGTCCTTGTTGAACATTTATATAAT
CTAACCTGGCCATCAAGCTGTTCTCTCTCTTCCTCTCTCTCTCTCTTATTTTTTTAATTT
TATTATTATTATTTTGGCAACATGTACATTTCTAACAAAGTTTATTGTGGCTATTAAAGT
GTTTTATTTCCCAATTCATATTACTCTTGTATCAAGTCCATGAGGTCTAAGGTAACTTAG
ATCAAAGTTTTAAAAGAGTAAAAATATTTCAGGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAAAGACTTGGGGGCCAGGCACTTCTGTCTTGTCACCTGTTGACATTTGGTGTCGAGTG
CATGGGTGGCTCCTGGACTACGTGTCTGCCCATCGACACGGTGGGGCTGGATTTGTTTCT
CAGGCAATCCTGTATTTTAATTTTAGATGTATTTCCTGAAGCATATTTTTCATAGAATGT
AGCGTGTAAATAGCTTTTTAAATAACTTCTTTTTTATAAGAGTAAAAGTATCTTTAGGAA
TTTCTTTCTATAGAGTCCTTCATTAACATTTATACGAGTTTTTTGCGGAGTATGATGAAC
AGTTGGGTTTCTGATGCTTTTCCTTTTCTTTGTATTATTATGGTTATTATTATTATTTTT
TCTTTTAGGAACTAAGGTATTGCCTGAAAAACAAGTGATGTCTGTGCAGCCTTATATCTG
TCTTTACAGAAGCAAACAGTACACAAAAGATCTATTTCAGACACATTTGAAGAGGAATCT
TCAACTTGAATACCAGCTCTTTGTTTCCTTCTTGTTGATGAAGGGGGTGGGGGTACAGTT
ATTTTACTAGCACCTTGTGAAGTGTTTCTGTGTTTTGTGATGCTGTAATTTATTAATGTT
TGTAGCTTTTTATATTTGTACATTTCTTATGAGCTTTGTTTATATGCCCAGCCCTGGGTG
TTCTGTCCACAAGGAGAGGCAGCTTCGCGTAGGCCTTGCCACCCTAGCTCATCCTTTGGA
GGTGGGGGACGCAGCCCCGGGTCCCAGAGGCTGGGAGGGGCGAGCCTCACGGGGCCCTGA
CTGTTCTGACCCGGCGTTTTGAAGGTTTCCTTTCCTGTCCTTGTTGAACATTTATATAAT
CTAACCTGGCCATCAAGCTGTTCTCTCTCTTCCTCTCTCTCTCTCTTATTTTTTTAATTT
TATTATTATTATTTTGGCAACATGTACATTTCTAACAAAGTTTATTGTGGCTATTAAAGT
GTTTTATTTCCCAATTCATATTACTCTTGTATCAAGTCCATGAGGTCTAAGGTAACTTAG
ATCAAAGTTTTAAAAGAGTAAAAATATTTCAGGTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               379-615, + strand, RNAz p=0.865501

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               379-615, + strand, RNAz p=0.865501

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               436-527, - strand, RNAmicro p=0.99703

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               436-527, - strand, RNAmicro p=0.99703

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_005392, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_005392, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               52-1056, gnl|bosTau2|chr8 (47620720-47621718)
               

               
               52-1056, gnl|Hg17|chr9 (93520408-93521415)
               

               
               52-1056, gnl|Mm7|chr13 (48286044-48285016)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               52-1056, gnl|bosTau2|chr8 (47620720-47621718)
               

               
               52-1056, gnl|Hg17|chr9 (93520408-93521415)
               

               
               52-1056, gnl|Mm7|chr13 (48286044-48285016)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               elu (0.385356)
               

               
               ece (0.229305)
               

               
               fhi (0.169578)
               

               
               spl (0.143184)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               ece (0.229305)
               

               
               fhi (0.169578)
               

               
               spl (0.143184)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

	52-1056, gnl\|bosTau2\|chr8 (47620720-47621718)
	52-1056, gnl\|Hg17\|chr9 (93520408-93521415)
	52-1056, gnl\|Mm7\|chr13 (48286044-48285016)

	elu (0.385356)
	ece (0.229305)
	fhi (0.169578)
	spl (0.143184)
	eep (0.122564)
	pgl (0.118483)
	ecc (0.115035)
	jca (0.11396)