Ss1.1-Pig4-TMW8064J04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGCAAGGCGGTCCCTTCGAGTGTGGTAGTTCGCTCCCTGAAGGGAGTCAGGGCGGTTA GGTGCTCGCGGCCACTTTCCCGTCCCCGGGAGATGTCCTTTGCTTCTCAGATGTAATGCA CTTTAAGTTTGTTATTCAACAGTGAAAATGAGTCATACAGAGGTTAAATTAAAAATTCCT TTTGGAAATAAATTACTAGATGCTGTTTGTTTGGTACCTAACAAGAGCTTAACATATGGG ATAATTCTTACACATGGAGCATCAGGAGACATGAATCTTCCTCATTTGATGTCACTGGCA TCCCATCTTGCATCTCATGGGTTTTTTTGCCTGAGATTTACGTGTAAAGGCCTTAATATT GTACATAGAATTAAGGCATATAAATCAGTTTTGAATTACCTAAAGACCTCAGGAGAATAC AAACTTGCAGGTGTTTTCCTTGGAGGTCGTTCAATGGGCTCAAGAGCAGCTGCTTCTGTA ATGTGTCATATTGAGCCAGATGATGCTGACGATTTTGTTCGAGGTCTCATTTGTATTTCC TATCCACTGCACCATCCAAAGCAACAGCATAAACTTAGAGATGAAGATCTCTTTCGTATA AAAGATCCTGTGCTGTTTGTGTCAGGCTCAGCAGATGAAATGTGTGAAAAGAACTTATTG GAGAAAGTGGCACAGAAAATGCAAGCTCCTAATAAAATCCACTGGATCGAGAAGGCAAAT CATTCCATGGCAGTGAAAGGACGGTCAACAAATGATGTTTTCAAAGAAATAAATACACAG ATTTTGTTTTGGATCCAGGAAATCACTGAAATGGTCAAGAAATAATTGTCTTTAGTTTAA AGCTATGTTATTTTGAATATAAGTACAGTTAATTTGTTAGAGAACAGCATACCTCTCAGC ATTATGATATATTTCAGACTAATGTTCTTTAATGTTTCCTTATTTTTAAAACACATTTTA ATTGTGAAATTAATGTCCTTTACAAAATGTCTTTTGAAAGCACTGCTATAGTTGTATAAA GATGATGTACAAATATTGAAGGTGGTCTAAATATAATTTATTTTCATTAATATAGTTTTG AAAAATTAAACATTGAATTTTGTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGCAAGGCGGTCCCTTCGAGTGTGGTAGTTCGCTCCCTGAAGGGAGTCAGGGCGGTTA GGTGCTCGCGGCCACTTTCCCGTCCCCGGGAGATGTCCTTTGCTTCTCAGATGTAATGCA CTTTAAGTTTGTTATTCAACAGTGAAAATGAGTCATACAGAGGTTAAATTAAAAATTCCT TTTGGAAATAAATTACTAGATGCTGTTTGTTTGGTACCTAACAAGAGCTTAACATATGGG ATAATTCTTACACATGGAGCATCAGGAGACATGAATCTTCCTCATTTGATGTCACTGGCA TCCCATCTTGCATCTCATGGGTTTTTTTGCCTGAGATTTACGTGTAAAGGCCTTAATATT GTACATAGAATTAAGGCATATAAATCAGTTTTGAATTACCTAAAGACCTCAGGAGAATAC AAACTTGCAGGTGTTTTCCTTGGAGGTCGTTCAATGGGCTCAAGAGCAGCTGCTTCTGTA ATGTGTCATATTGAGCCAGATGATGCTGACGATTTTGTTCGAGGTCTCATTTGTATTTCC TATCCACTGCACCATCCAAAGCAACAGCATAAACTTAGAGATGAAGATCTCTTTCGTATA AAAGATCCTGTGCTGTTTGTGTCAGGCTCAGCAGATGAAATGTGTGAAAAGAACTTATTG GAGAAAGTGGCACAGAAAATGCAAGCTCCTAATAAAATCCACTGGATCGAGAAGGCAAAT CATTCCATGGCAGTGAAAGGACGGTCAACAAATGATGTTTTCAAAGAAATAAATACACAG ATTTTGTTTTGGATCCAGGAAATCACTGAAATGGTCAAGAAATAATTGTCTTTAGTTTAA AGCTATGTTATTTTGAATATAAGTACAGTTAATTTGTTAGAGAACAGCATACCTCTCAGC ATTATGATATATTTCAGACTAATGTTCTTTAATGTTTCCTTATTTTTAAAACACATTTTA ATTGTGAAATTAATGTCCTTTACAAAATGTCTTTTGAAAGCACTGCTATAGTTGTATAAA GATGATGTACAAATATTGAAGGTGGTCTAAATATAATTTATTTTCATTAATATAGTTTTG AAAAATTAAACATTGAATTTTGTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 729-847, - strand, RNAz p=0.635676 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 729-847, - strand, RNAz p=0.635676 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 161-393, gnl|bosTau2|chr12 (42592818-42593050) | |
| 161-393, gnl|canFam2|chr22 (55210172-55210321) | |
| 161-393, gnl|danRer3|chr9 (27063517-27063368) | |
| 161-393, gnl|dasNov1|scaffold_6103 (34022-33832) | |
| 161-393, gnl|echTel1|scaffold_276239 (95093-94944) | |
| 161-393, gnl|fr1|chrUn (136871733-136871584) | |
| 161-393, gnl|galGal2|chr1 (135497384-135497533) | |
| 161-393, gnl|hg17|chr13 (102219664-102219813) | |
| 161-393, gnl|Hg17|chr13 (102219894-102219662) | |
| 161-393, gnl|loxAfr1|scaffold_84 (90265-90116) | |
| 161-393, gnl|mm7|chr1 (44331750-44331899) | |
| 161-393, gnl|Mm7|chr1 (44331980-44331748) | |
| 161-393, gnl|monDom2|scaffold_11 (48315622-48315473) | |
| 161-393, gnl|oryCun1|scaffold_198036 (22564-22415) | |
| 161-393, gnl|panTro1|chr14 (85611206-85611355) | |
| 161-393, gnl|rheMac2|chr17 (83069747-83069896) | |
| 161-393, gnl|rn3|chr9 (43188424-43188573) | |
| 161-393, gnl|xenTro1|scaffold_77 (2338400-2338549) | |
| 444-619, gnl|bosTau2|chr12 (42594370-42594545) | |
| 444-619, gnl|Hg17|chr13 (102217831-102217656) | |
| 444-619, gnl|Mm7|chr1 (44328437-44328262) | |
| 650-1104, gnl|bosTau2|chr12 (42595445-42595906) | |
| 650-1104, gnl|Hg17|chr13 (102216933-102216468) | |
| 650-1104, gnl|Mm7|chr1 (44327452-44327004) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 161-393, gnl|bosTau2|chr12 (42592818-42593050) | |
| 161-393, gnl|canFam2|chr22 (55210172-55210321) | |
| 161-393, gnl|danRer3|chr9 (27063517-27063368) | |
| 161-393, gnl|dasNov1|scaffold_6103 (34022-33832) | |
| 161-393, gnl|echTel1|scaffold_276239 (95093-94944) | |
| 161-393, gnl|fr1|chrUn (136871733-136871584) | |
| 161-393, gnl|galGal2|chr1 (135497384-135497533) | |
| 161-393, gnl|hg17|chr13 (102219664-102219813) | |
| 161-393, gnl|Hg17|chr13 (102219894-102219662) | |
| 161-393, gnl|loxAfr1|scaffold_84 (90265-90116) | |
| 161-393, gnl|mm7|chr1 (44331750-44331899) | |
| 161-393, gnl|Mm7|chr1 (44331980-44331748) | |
| 161-393, gnl|monDom2|scaffold_11 (48315622-48315473) | |
| 161-393, gnl|oryCun1|scaffold_198036 (22564-22415) | |
| 161-393, gnl|panTro1|chr14 (85611206-85611355) | |
| 161-393, gnl|rheMac2|chr17 (83069747-83069896) | |
| 161-393, gnl|rn3|chr9 (43188424-43188573) | |
| 161-393, gnl|xenTro1|scaffold_77 (2338400-2338549) | |
| 444-619, gnl|bosTau2|chr12 (42594370-42594545) | |
| 444-619, gnl|Hg17|chr13 (102217831-102217656) | |
| 444-619, gnl|Mm7|chr1 (44328437-44328262) | |
| 650-1104, gnl|bosTau2|chr12 (42595445-42595906) | |
| 650-1104, gnl|Hg17|chr13 (102216933-102216468) | |
| 650-1104, gnl|Mm7|chr1 (44327452-44327004) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| cte (0.58548) | |
| kid (0.389206) | |
| tes (0.207814) | |
| sin (0.174948) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| liv (0.146284) | |
| lin (0.145603) | |
| che (0.136314) | |
| pla (0.133672) | |
| ret (0.128733) | |
| thg (0.126791) | |
| spc (0.113366) | |
| eje (0.0988338) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.58548) | |
| kid (0.389206) | |
| tes (0.207814) | |
| sin (0.174948) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| liv (0.146284) | |
| lin (0.145603) | |
| che (0.136314) | |
| pla (0.133672) | |
| ret (0.128733) | |
| thg (0.126791) | |
| spc (0.113366) | |
| eje (0.0988338) |