Non-Coding RNA Search

Ss1.1-Pig4-TMW8064J05.5

Sequence:


               
               AGGCTGCCTTAGAGGAAGCAGAGGCATCGCTTGAACATGAAGAGGGAAAGATCCTGCGCA
TCCAGCTGGAGCTGAACCAAGTCAAAGCCGACGTTGATAGAAAAATTGCCGAAAAAGATG
AGGAAATTGAACAGCTGAAGAGGAACCACATTAGAGTGGTAGAGTCCATGCAGAGCACGC
TGGATGCTGAGATCAGGAGCAGGAATGATGCCCTGAGAGTCAAGAAGAAGATGGAAGGAG
ATTTGAATGAAATGGAAATCCAGCTGAACCATGCCAACCGCTTGGCAGCAGAGAGCTTGA
GGAACTACAGGAACACCCAAGGCATCCTCAAGGACACCCAGCTCCACCTGGACGACGCTC
TCCGAGGCCAGGAGGACCTGAAGGAGCAGCTGGCCATCGTGGAGCGCAGAGCCAGCCTGC
TGCAGGCCGAGGTGGAGGAGCTGCGGGCCACTCTGGAGCAGACGGAGAGGAGCAGGAAAA
TTGCAGAACAGGAGCTTCTGGATGCCAGTGAGCGAGTCCAGCTCCTGCACACCCAGAACA
CCAGCCTGATCAACACCAAGAAGAAATTAGAAAGTGATATTTCACAACTCCAGAGTGAAG
TGGAAGAAGTAATCCAAGAGTCACGCAACGCAGAAGAGAAGGCCAAGAAGGCCATCACTG
ATGCAGCCATGATGGCCGAGGAGCTGAAGAAGGAGCAGGACACCAGCGCCCACCTGGAGC
GGATGAAGAAGAACCTGGAGCAGACGGTGAAGGACCTGCAGCACCGCCTGGACGAGGCGG
AGCAGCTGGCCCTGAAGGGCGGGAAGAAGCAGATCCAGAAGCTGGAGGCCAGAGTACGTG
AACTTGAAGGAGAGGTTGAAAGCGAACAGAAACGTAACGCTGAGGCTGTTAAAGGTTTGC
GGAAACATGAGAGAAGAGTAAAGGAACTCACCTACCAGACTGAGGAAGACCGCAAAAATA
TTCTCAGGCTGCAGGACTTGGTAGATAAATTACAGGCGAAGGTGAAATCATACAAGAGAC
AAGCTGAGGAGGCTGAGGAACAATCCAACGCCAATCTTGCCAAAATCCGCAAGCTCCAGC
ATGAGCTGGAAGAGGCCGAGGAACGGGCTGACATTGCTGAGTCCCAGGTCAACAAGCTGC
GGGTCAAGAGCCGGGAGATCCACCCAAAAGTCAGTGCAGAATGAACATATCTGCCTGATG
CTGCCAAGGGGCTACAGAAGGCACAAAATGTGCTATTCTGGGTCACTTGCTTTGTCAGGT
CCTACTCTTAACGTTGAAAAAATTAAAACTACAGTGAACTTCTAAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGCTGCCTTAGAGGAAGCAGAGGCATCGCTTGAACATGAAGAGGGAAAGATCCTGCGCA
TCCAGCTGGAGCTGAACCAAGTCAAAGCCGACGTTGATAGAAAAATTGCCGAAAAAGATG
AGGAAATTGAACAGCTGAAGAGGAACCACATTAGAGTGGTAGAGTCCATGCAGAGCACGC
TGGATGCTGAGATCAGGAGCAGGAATGATGCCCTGAGAGTCAAGAAGAAGATGGAAGGAG
ATTTGAATGAAATGGAAATCCAGCTGAACCATGCCAACCGCTTGGCAGCAGAGAGCTTGA
GGAACTACAGGAACACCCAAGGCATCCTCAAGGACACCCAGCTCCACCTGGACGACGCTC
TCCGAGGCCAGGAGGACCTGAAGGAGCAGCTGGCCATCGTGGAGCGCAGAGCCAGCCTGC
TGCAGGCCGAGGTGGAGGAGCTGCGGGCCACTCTGGAGCAGACGGAGAGGAGCAGGAAAA
TTGCAGAACAGGAGCTTCTGGATGCCAGTGAGCGAGTCCAGCTCCTGCACACCCAGAACA
CCAGCCTGATCAACACCAAGAAGAAATTAGAAAGTGATATTTCACAACTCCAGAGTGAAG
TGGAAGAAGTAATCCAAGAGTCACGCAACGCAGAAGAGAAGGCCAAGAAGGCCATCACTG
ATGCAGCCATGATGGCCGAGGAGCTGAAGAAGGAGCAGGACACCAGCGCCCACCTGGAGC
GGATGAAGAAGAACCTGGAGCAGACGGTGAAGGACCTGCAGCACCGCCTGGACGAGGCGG
AGCAGCTGGCCCTGAAGGGCGGGAAGAAGCAGATCCAGAAGCTGGAGGCCAGAGTACGTG
AACTTGAAGGAGAGGTTGAAAGCGAACAGAAACGTAACGCTGAGGCTGTTAAAGGTTTGC
GGAAACATGAGAGAAGAGTAAAGGAACTCACCTACCAGACTGAGGAAGACCGCAAAAATA
TTCTCAGGCTGCAGGACTTGGTAGATAAATTACAGGCGAAGGTGAAATCATACAAGAGAC
AAGCTGAGGAGGCTGAGGAACAATCCAACGCCAATCTTGCCAAAATCCGCAAGCTCCAGC
ATGAGCTGGAAGAGGCCGAGGAACGGGCTGACATTGCTGAGTCCCAGGTCAACAAGCTGC
GGGTCAAGAGCCGGGAGATCCACCCAAAAGTCAGTGCAGAATGAACATATCTGCCTGATG
CTGCCAAGGGGCTACAGAAGGCACAAAATGTGCTATTCTGGGTCACTTGCTTTGTCAGGT
CCTACTCTTAACGTTGAAAAAATTAAAACTACAGTGAACTTCTAAATT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               101-300, + strand, RNAz p=0.906638
               

               
               1035-1255, + strand, RNAz p=0.974738

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               101-300, + strand, RNAz p=0.906638
               

               
               1035-1255, + strand, RNAz p=0.974738

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               1042-1130, - strand, RNAmicro p=0.984388

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               1042-1130, - strand, RNAmicro p=0.984388

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               102-300, LB03090.CR_M08 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE388706.1|), 
blast E-value=0, identity=93.47% 
               

               
               102-300, LB03091.CR_N17 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE389048.1|), 
blast E-value=0, identity=93.47% 
               

               
               102-300, LB03094.CR_I15 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE389792.1|), 
blast E-value=0, identity=93.47% 
               

               
               102-300, LB030102.CR_B24 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE390233.1|), 
blast E-value=0, identity=93.47% 
               

               
               102-300, LB030107.CR_I09 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE391286.1|), 
blast E-value=0, identity=93.47% 
               

               
               102-300, LB030107.CR_L24 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE391354.1|), 
blast E-value=0, identity=93.47%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               102-300, LB03090.CR_M08 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE388706.1|), 
blast E-value=0, identity=93.47% 
               

               
               102-300, LB03091.CR_N17 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE389048.1|), 
blast E-value=0, identity=93.47% 
               

               
               102-300, LB03094.CR_I15 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE389792.1|), 
blast E-value=0, identity=93.47% 
               

               
               102-300, LB030102.CR_B24 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE390233.1|), 
blast E-value=0, identity=93.47% 
               

               
               102-300, LB030107.CR_I09 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE391286.1|), 
blast E-value=0, identity=93.47% 
               

               
               102-300, LB030107.CR_L24 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE391354.1|), 
blast E-value=0, identity=93.47%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_005963, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_005963, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               22-333, gnl|bosTau2|chr19 (22522100-22521789)
               

               
               22-333, gnl|Hg17|chr17 (10292170-10291859)
               

               
               22-333, gnl|Mm7|chr11 (67337751-67338062)
               


               
               1035-1255, gnl|bosTau2|chr19 (2413075-2412854)
               

               
               1035-1255, gnl|Hg17|chr17 (10336610-10336389)
               

               
               1035-1255, gnl|Mm7|chr11 (67305883-67306104)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               22-333, gnl|bosTau2|chr19 (22522100-22521789)
               

               
               22-333, gnl|Hg17|chr17 (10292170-10291859)
               

               
               22-333, gnl|Mm7|chr11 (67337751-67338062)
               


               
               1035-1255, gnl|bosTau2|chr19 (2413075-2412854)
               

               
               1035-1255, gnl|Hg17|chr17 (10336610-10336389)
               

               
               1035-1255, gnl|Mm7|chr11 (67305883-67306104)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ese (0.506009)
               

               
               eru (0.360144)
               

               
               eye (0.341006)
               

               
               ldo (0.0970026)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.506009)
               

               
               eru (0.360144)
               

               
               eye (0.341006)
               

               
               ldo (0.0970026)

	101-300, + strand, RNAz p=0.906638
	1035-1255, + strand, RNAz p=0.974738

	102-300, LB03090.CR_M08 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb\|EE388706.1\|), blast E-value=0, identity=93.47%
	102-300, LB03091.CR_N17 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb\|EE389048.1\|), blast E-value=0, identity=93.47%
	102-300, LB03094.CR_I15 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb\|EE389792.1\|), blast E-value=0, identity=93.47%
	102-300, LB030102.CR_B24 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb\|EE390233.1\|), blast E-value=0, identity=93.47%
	102-300, LB030107.CR_I09 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb\|EE391286.1\|), blast E-value=0, identity=93.47%
	102-300, LB030107.CR_L24 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb\|EE391354.1\|), blast E-value=0, identity=93.47%

	22-333, gnl\|bosTau2\|chr19 (22522100-22521789)
	22-333, gnl\|Hg17\|chr17 (10292170-10291859)
	22-333, gnl\|Mm7\|chr11 (67337751-67338062)

	1035-1255, gnl\|bosTau2\|chr19 (2413075-2412854)
	1035-1255, gnl\|Hg17\|chr17 (10336610-10336389)
	1035-1255, gnl\|Mm7\|chr11 (67305883-67306104)