Non-Coding RNA Search

Ss1.1-Pig4-TMW8064J06.3.5

Sequence:


               
               TTCGCATGCTCCAGGTCGCTTCAGTTAAGGGCGCCATGGGTCGTGGCGGGCCACCTTATT
GCATGGTTGTATATGGCAACCGTCCACCTTGCTCACTATCCCGTGCGCCCCGTGAGGGTT
CACATTCTATCCAGGCGGCTCCCAGCACTGTACTGACACGCACCAGTGATTGACAGGCTG
AGCGGCCGCAGAACGCGCAGGCGTAGTTGCCCGGGCTGCGCTTCCGGAACGGTGCGGTGG
GACTCTTTTGGCGCCGGCAACGGCGCGAGTGGGGACGGCGGCCGGTAAGGCGCGGTTTTC
GTTCCGCGTTCCGGGTCCCGGCGGCGCCATGCGCTTTAACGAGAAGGAGCTGCAGGCGCT
CTCCCGGCAGCCGGCCGAGATGGCGGCTGAGCTGGGCATGAGGGGCCCGAAAAAAGGAAG
CGTGGTGAAGCGGAGACTGGTGAAGCTGGTGGTCAACTTCCTCTTCTACTTCCGGACGGA
CGAGGCAGAGCCCGTCGGAGCCCTGCTGCTGGAACACTGCAGAGTCACCCAGGAAGAGCC
CAGCGGCTTCTCCATCAGCTTTCTAGAGGACCCAGAGAGGAAGTACCACTTTGAGTGCTG
CAGCGAGGAGCAGTGTCAGGAGTGGATGGCCGCCCTGCGCCGAGCCAGTTACGAATTCAT
GCGAAGGAGCCTCGTCTTCTACAGGAACGAGATCCAGAAGGTGACTGGCAAGGACCCCCT
GGAGCAGTTCGGCATATCGGAGGAGGCCAGGTTCCAGTTGAGCGGCCTGAAGGCTTGAGT
CCCGGCTGGGGATCGTCACCTTTTCTCCTGGGGCCTGAACAAGTGCCCCCACCCTGCTGG
GCCATGGGTTTCCTAGCCAGGCTCCAGTTTGCTGTGGGAGGTGTCTTGACTTAAAGACTT
CAAAAGCCCAAAGCTGGTCAGGGCAGGTAGGGGCTGCCTTTTTGGAGAAACAATCCAGCA
AGCCTCCTTGGGGTGCACTGGGACCTACTGGACTGATTTGGCACCCTAGTGCCACGTGCT
GCTTCCAGGGGACGAGTGTCCACTCCCAGGAGCTGTGCCTGGGCACCCAAGGCTGGCGTG
CTCTCCTGCGCTATGCAGGCTGAATGTATAAAATTAGATTGTGCTGTGAAGGGCATGGGG
CTGCATTGGGGCCACTGTGAATTCTCTTGCTGAAAAGGCAGGCCTTAGCCGGACGCCTGT
GGGCAGAGCTGGAAGATTTGCCCTTGGGATGGCCAGTTTGTTCTGTTTAAATAAAGGTAC
CTCTTTTCCACATGGGGCAGTGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCGCATGCTCCAGGTCGCTTCAGTTAAGGGCGCCATGGGTCGTGGCGGGCCACCTTATT
GCATGGTTGTATATGGCAACCGTCCACCTTGCTCACTATCCCGTGCGCCCCGTGAGGGTT
CACATTCTATCCAGGCGGCTCCCAGCACTGTACTGACACGCACCAGTGATTGACAGGCTG
AGCGGCCGCAGAACGCGCAGGCGTAGTTGCCCGGGCTGCGCTTCCGGAACGGTGCGGTGG
GACTCTTTTGGCGCCGGCAACGGCGCGAGTGGGGACGGCGGCCGGTAAGGCGCGGTTTTC
GTTCCGCGTTCCGGGTCCCGGCGGCGCCATGCGCTTTAACGAGAAGGAGCTGCAGGCGCT
CTCCCGGCAGCCGGCCGAGATGGCGGCTGAGCTGGGCATGAGGGGCCCGAAAAAAGGAAG
CGTGGTGAAGCGGAGACTGGTGAAGCTGGTGGTCAACTTCCTCTTCTACTTCCGGACGGA
CGAGGCAGAGCCCGTCGGAGCCCTGCTGCTGGAACACTGCAGAGTCACCCAGGAAGAGCC
CAGCGGCTTCTCCATCAGCTTTCTAGAGGACCCAGAGAGGAAGTACCACTTTGAGTGCTG
CAGCGAGGAGCAGTGTCAGGAGTGGATGGCCGCCCTGCGCCGAGCCAGTTACGAATTCAT
GCGAAGGAGCCTCGTCTTCTACAGGAACGAGATCCAGAAGGTGACTGGCAAGGACCCCCT
GGAGCAGTTCGGCATATCGGAGGAGGCCAGGTTCCAGTTGAGCGGCCTGAAGGCTTGAGT
CCCGGCTGGGGATCGTCACCTTTTCTCCTGGGGCCTGAACAAGTGCCCCCACCCTGCTGG
GCCATGGGTTTCCTAGCCAGGCTCCAGTTTGCTGTGGGAGGTGTCTTGACTTAAAGACTT
CAAAAGCCCAAAGCTGGTCAGGGCAGGTAGGGGCTGCCTTTTTGGAGAAACAATCCAGCA
AGCCTCCTTGGGGTGCACTGGGACCTACTGGACTGATTTGGCACCCTAGTGCCACGTGCT
GCTTCCAGGGGACGAGTGTCCACTCCCAGGAGCTGTGCCTGGGCACCCAAGGCTGGCGTG
CTCTCCTGCGCTATGCAGGCTGAATGTATAAAATTAGATTGTGCTGTGAAGGGCATGGGG
CTGCATTGGGGCCACTGTGAATTCTCTTGCTGAAAAGGCAGGCCTTAGCCGGACGCCTGT
GGGCAGAGCTGGAAGATTTGCCCTTGGGATGGCCAGTTTGTTCTGTTTAAATAAAGGTAC
CTCTTTTCCACATGGGGCAGTGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q9NW61_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9NW61_HUMAN

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               248-367, + strand, RNAz p=0.889366
               

               
               1045-1134, - strand, RNAz p=0.990721

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               248-367, + strand, RNAz p=0.889366
               

               
               1045-1134, - strand, RNAz p=0.990721

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               52-422, gnl|bosTau2|chr7 (18170915-18170548)
               

               
               52-422, gnl|Hg17|chr19 (2187504-2187154)
               


               
               711-1284, gnl|bosTau2|chr7 (18168992-18168415)
               

               
               711-1284, gnl|Hg17|chr19 (2184906-2184140)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               52-422, gnl|bosTau2|chr7 (18170915-18170548)
               

               
               52-422, gnl|Hg17|chr19 (2187504-2187154)
               


               
               711-1284, gnl|bosTau2|chr7 (18168992-18168415)
               

               
               711-1284, gnl|Hg17|chr19 (2184906-2184140)

Expressed library(ies): 23 entry(ies)

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Expressed library(ies): 23 entry(ies)

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               cje (0.991408)
               

               
               cst (0.420109)
               

               
               cov (0.396458)
               

               
               nep (0.36785)
               

               
               cga (0.279096)
               

               
               che (0.272628)
               

               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               fli (0.202881)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               cag (0.151194)
               

               
               bfe (0.149858)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.991408)
               

               
               cst (0.420109)
               

               
               cov (0.396458)
               

               
               nep (0.36785)
               

               
               cga (0.279096)
               

               
               che (0.272628)
               

               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               fli (0.202881)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               cag (0.151194)
               

               
               bfe (0.149858)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	248-367, + strand, RNAz p=0.889366
	1045-1134, - strand, RNAz p=0.990721

	52-422, gnl\|bosTau2\|chr7 (18170915-18170548)
	52-422, gnl\|Hg17\|chr19 (2187504-2187154)

	711-1284, gnl\|bosTau2\|chr7 (18168992-18168415)
	711-1284, gnl\|Hg17\|chr19 (2184906-2184140)

	cje (0.991408)
	cst (0.420109)
	cov (0.396458)
	nep (0.36785)
	cga (0.279096)
	che (0.272628)
	fce (0.271592)
	ece (0.229305)
	fli (0.202881)
	gul (0.177588)
	fty (0.17584)
	sin (0.174948)
	cut (0.169924)
	cag (0.151194)
	bfe (0.149858)
	ste (0.135208)
	nmm (0.132802)
	ute (0.132784)
	ese (0.126502)
	pgl (0.118483)
	jca (0.11396)
	jej (0.0989218)
	eje (0.0988338)