Non-Coding RNA Search

Ss1.1-Pig4-TMW8064J14.5

Sequence:


               
               CAAAGTATGTTTCAGAATTGGTCATAGTCTTTCCACGTGATGTGTGTACACCACAGACCA
TGCCGAATGTGGTCATTTTACATAAAATGACTTAGGAACACTGGTTCTATCTGGGCCGCG
TCCAAAAATTCGCACTTTTCTTCTTTGCTTTTTAGGCAAGCACTCTGAATTCATCATGTT
AAGGGCAAGTTGCATTTTTGCCACATTTCTGTGTTCGTGAAAAGTGAATCTGCAGAATAG
TTACTGATTTTTTTTTGTTTGTTTTATAAACAAGCGTTTTTAAAAGTAAGAATGAATAGG
TTGGGTTTTTTACAAACATTTGTTCCTCCTTGATAAAAGTAGTTCTGATGGATAATAATT
TAATACGATTTGATTACTATAGTTCTATCTTATTGGTTATATTTAATCTTAGCATGAGCT
TTTCACGCCAAGATTTCTATATTTTGTAACATAGGTAAAATATTTAAAACATCAAAAACT
GTAAATCTAAATTTTCTTCTCCTAAATCCAACTACAATGTCTTTTCCTCTGATTGTCTGA
AGTGATTCATGTCATTACTCACTAGTCTTGCTTTGGAGTGACCAGAAGAGAATTACTGTG
TGATAAGTGAGCTGGGGGGGGTGGTCACAGTGGTTCTGCTTGGTCCCTGCTATTATCTGT
CCTCCCAACTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAGTATGTTTCAGAATTGGTCATAGTCTTTCCACGTGATGTGTGTACACCACAGACCA
TGCCGAATGTGGTCATTTTACATAAAATGACTTAGGAACACTGGTTCTATCTGGGCCGCG
TCCAAAAATTCGCACTTTTCTTCTTTGCTTTTTAGGCAAGCACTCTGAATTCATCATGTT
AAGGGCAAGTTGCATTTTTGCCACATTTCTGTGTTCGTGAAAAGTGAATCTGCAGAATAG
TTACTGATTTTTTTTTGTTTGTTTTATAAACAAGCGTTTTTAAAAGTAAGAATGAATAGG
TTGGGTTTTTTACAAACATTTGTTCCTCCTTGATAAAAGTAGTTCTGATGGATAATAATT
TAATACGATTTGATTACTATAGTTCTATCTTATTGGTTATATTTAATCTTAGCATGAGCT
TTTCACGCCAAGATTTCTATATTTTGTAACATAGGTAAAATATTTAAAACATCAAAAACT
GTAAATCTAAATTTTCTTCTCCTAAATCCAACTACAATGTCTTTTCCTCTGATTGTCTGA
AGTGATTCATGTCATTACTCACTAGTCTTGCTTTGGAGTGACCAGAAGAGAATTACTGTG
TGATAAGTGAGCTGGGGGGGGTGGTCACAGTGGTTCTGCTTGGTCCCTGCTATTATCTGT
CCTCCCAACTGT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-632, gnl|bosTau2|chr4 (37695791-37696410)
               

               
               1-632, gnl|Hg17|chr7 (29326338-29326965)
               

               
               1-632, gnl|Mm7|chr6 (54264335-54264960)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-632, gnl|bosTau2|chr4 (37695791-37696410)
               

               
               1-632, gnl|Hg17|chr7 (29326338-29326965)
               

               
               1-632, gnl|Mm7|chr6 (54264335-54264960)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cbe (0.239234)
               

               
               fbs (0.175346)
               

               
               spc (0.113366)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               fbs (0.175346)
               

               
               spc (0.113366)

	1-632, gnl\|bosTau2\|chr4 (37695791-37696410)
	1-632, gnl\|Hg17\|chr7 (29326338-29326965)
	1-632, gnl\|Mm7\|chr6 (54264335-54264960)