Non-Coding RNA Search

Ss1.1-Pig4-TMW8064K11.3

Sequence:


               
               CCCTGCGCGTCCTCTCTCCCCGGGGCGCCCCCGCCCCCACCCTGTGCTCAAAGCACCTGA
CAGCTGCCACCTGAAACATTAACCTTTCCCTCATGTCAAGGGACGCCAATGACTTCTGCC
TCTGGATCTCAAGGCTCCTTTCGTTCCTGGGGCACCAGGTTTGCCTCTGGCCTCTTCAGG
GGATGTCAGGTGCAAGGTGCTTAGCATTTGCCCCCTGTCTCGGGGACCTCAGCCTCCTTC
CTCCGTCAATGCCTGTTCTAAGCCCCAGTGGCAGGGTTCAGAGGGAAAGCTGCACGGTGG
TGGCTGTCCCTGCCCTTGGTCCTATGGACCCCTCTCTGTTCTAAGAAGCCGCTGTGGCAG
TACTCAGGTGTGGCCACCAGGAGATTGTCCACCTCCAGTGAGGTGAAAGGAAAGAGGTTA
CCAACTGCAAAGCTGAATTGGCCTGAGAAGTACGTACTCCTTTTTTTTAAGCAGGACATA
ATCCATAGTGGAGGAGCCAAACACAGAATGAAGACTGCTGAACAAGGGAGTTCCCTTCAT
AGCTCAGCAGTTAACGAACCTGACTAGTATCCATGAGGTTGTGGATTCGATATCTGGCCT
CAGTCGGGGTTAAGGATCCGGCCTTGCCGTGTGCTGTGGAATAGGTTGCAGATGCAGCTC
GAAATCCTGTGTGGCTGTGGTGTAGGGGGGCAGCTATAACTCCAATTTGACCCCTAGCCT
GGGAACTTCCATATGCTGCAGGTGCGGCCCTAAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTGCGCGTCCTCTCTCCCCGGGGCGCCCCCGCCCCCACCCTGTGCTCAAAGCACCTGA
CAGCTGCCACCTGAAACATTAACCTTTCCCTCATGTCAAGGGACGCCAATGACTTCTGCC
TCTGGATCTCAAGGCTCCTTTCGTTCCTGGGGCACCAGGTTTGCCTCTGGCCTCTTCAGG
GGATGTCAGGTGCAAGGTGCTTAGCATTTGCCCCCTGTCTCGGGGACCTCAGCCTCCTTC
CTCCGTCAATGCCTGTTCTAAGCCCCAGTGGCAGGGTTCAGAGGGAAAGCTGCACGGTGG
TGGCTGTCCCTGCCCTTGGTCCTATGGACCCCTCTCTGTTCTAAGAAGCCGCTGTGGCAG
TACTCAGGTGTGGCCACCAGGAGATTGTCCACCTCCAGTGAGGTGAAAGGAAAGAGGTTA
CCAACTGCAAAGCTGAATTGGCCTGAGAAGTACGTACTCCTTTTTTTTAAGCAGGACATA
ATCCATAGTGGAGGAGCCAAACACAGAATGAAGACTGCTGAACAAGGGAGTTCCCTTCAT
AGCTCAGCAGTTAACGAACCTGACTAGTATCCATGAGGTTGTGGATTCGATATCTGGCCT
CAGTCGGGGTTAAGGATCCGGCCTTGCCGTGTGCTGTGGAATAGGTTGCAGATGCAGCTC
GAAATCCTGTGTGGCTGTGGTGTAGGGGGGCAGCTATAACTCCAATTTGACCCCTAGCCT
GGGAACTTCCATATGCTGCAGGTGCGGCCCTAAAAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               368-485, - strand, RNAz p=0.992684

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               368-485, - strand, RNAz p=0.992684

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               4-215, gnl|bosTau2|chr8 (31151555-31151341)
               

               
               4-215, gnl|Hg17|chr8 (22323593-22323806)
               

               
               4-215, gnl|Mm7|chr14 (64960132-64959919)
               


               
               229-485, gnl|bosTau2|chr8 (31151303-31151053)
               

               
               229-485, gnl|Hg17|chr8 (22323820-22324046)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-215, gnl|bosTau2|chr8 (31151555-31151341)
               

               
               4-215, gnl|Hg17|chr8 (22323593-22323806)
               

               
               4-215, gnl|Mm7|chr14 (64960132-64959919)
               


               
               229-485, gnl|bosTau2|chr8 (31151303-31151053)
               

               
               229-485, gnl|Hg17|chr8 (22323820-22324046)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jca (0.11396)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)

	4-215, gnl\|bosTau2\|chr8 (31151555-31151341)
	4-215, gnl\|Hg17\|chr8 (22323593-22323806)
	4-215, gnl\|Mm7\|chr14 (64960132-64959919)

	229-485, gnl\|bosTau2\|chr8 (31151303-31151053)
	229-485, gnl\|Hg17\|chr8 (22323820-22324046)