Non-Coding RNA Search

Ss1.1-Pig4-TMW8064K18.5

Sequence:


               
               AATATGTCCCCAGATTATTAGCACTTTTAGAGGAGAAGCCAAGGTATGTAGGGTGTGTGG
CCGGCCCATCAGTGGAGCATGAGAGAATGGGATACCATTGTGGGAAGAAAAAAGTTCCTC
AGGGGCCTCCCACTGCTAAAGCTTTTTGTGAGACGTTGATCTGTGCTCCCTGAGTTTGAC
TTTTAAAGGAATTATTCCGGCAGCACATGTAGTATTCTTGGATGATCTTGCTGCTCTTAT
TTTTCCTTTCTCGTGTGTGTGTGTGTGTGTGTGGGTGTGTGTGTGTGGGTGTGTGTGTGT
GTGTGTGTCTATGGGTTTTCATTTGTAACTCCATCTGCTTAGGAGAGTGGGCTCTCCACA
AGGGAACCTGCTGTGAACTTCATTGCAGCAAGAATGTAGAGAGAAATAGGACTTATTCCA
CTAGGGGCTCTCATCTCACACCTTAAGGAGAGGAAGGAGATTTCTAGAAAAACTGGGCCA
GATTTTCTTTGTTCTCCATCATTTTAATACGGCAAGCTGTTTGGCTTTCCTACTCTGACC
TATGTTATGTTCTTTTATAATGTACCCAAGAAGAAAAAAGACCAATCAGTGTCTCTTTAT
TTTAGTCCTTGATTCCTCTCAGTTCTTGATTTTCGGCATTTGTCAGATTCCTAATTTGGA
TATGGGTTAGCAGATTTAACCTTTATGTTTGTGCCTACCCAGGGGACTCCCCAGATTCTG
AACTTGAGTTAGGCTAAGAGGAATCCATGAGGTGCTATCTGGGCAGACTTAAGTGGATTT
TCTTTCCTTGGTTCTCCTTTGACCTAGGACTTCTTGTTTTATTGTCCCCTCTTCTAGATC
AACTCTCCTTTGATTTGGATATGTTGAAGTTTTGTTGAGAAGGAGGATGGAGAGTAGATC
AGCAAAGTTCCAAGAGCAAAATTACAGTGTGTTAGAGTGTGGGGGGAAATCAGTCGTATT
TTTTCCCTACATGGGATACAGCACTGTGAAATCCCATCTTCAACTGAAGGCCCTACAGTT
CTCCTAAAACATAGTTCTTTGTTTCTTTCTTTAACAAAGTTTAAGCTAGTGTTAATAAAT
TAAAAAGAGAAATTGCTTGTCTGTCCACTTCAGCTTTGTTTTATGCCCATTTCATATTGT
TGTCTGTGTTGTAATTCATACTTTTGATACCATTTCTGATGTGTAAAATTGGTTGTCTTG
TAAATATCTTATAAAGAGTTCAATTGTAAATAAACTATTGTGGCTGTTAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATATGTCCCCAGATTATTAGCACTTTTAGAGGAGAAGCCAAGGTATGTAGGGTGTGTGG
CCGGCCCATCAGTGGAGCATGAGAGAATGGGATACCATTGTGGGAAGAAAAAAGTTCCTC
AGGGGCCTCCCACTGCTAAAGCTTTTTGTGAGACGTTGATCTGTGCTCCCTGAGTTTGAC
TTTTAAAGGAATTATTCCGGCAGCACATGTAGTATTCTTGGATGATCTTGCTGCTCTTAT
TTTTCCTTTCTCGTGTGTGTGTGTGTGTGTGTGGGTGTGTGTGTGTGGGTGTGTGTGTGT
GTGTGTGTCTATGGGTTTTCATTTGTAACTCCATCTGCTTAGGAGAGTGGGCTCTCCACA
AGGGAACCTGCTGTGAACTTCATTGCAGCAAGAATGTAGAGAGAAATAGGACTTATTCCA
CTAGGGGCTCTCATCTCACACCTTAAGGAGAGGAAGGAGATTTCTAGAAAAACTGGGCCA
GATTTTCTTTGTTCTCCATCATTTTAATACGGCAAGCTGTTTGGCTTTCCTACTCTGACC
TATGTTATGTTCTTTTATAATGTACCCAAGAAGAAAAAAGACCAATCAGTGTCTCTTTAT
TTTAGTCCTTGATTCCTCTCAGTTCTTGATTTTCGGCATTTGTCAGATTCCTAATTTGGA
TATGGGTTAGCAGATTTAACCTTTATGTTTGTGCCTACCCAGGGGACTCCCCAGATTCTG
AACTTGAGTTAGGCTAAGAGGAATCCATGAGGTGCTATCTGGGCAGACTTAAGTGGATTT
TCTTTCCTTGGTTCTCCTTTGACCTAGGACTTCTTGTTTTATTGTCCCCTCTTCTAGATC
AACTCTCCTTTGATTTGGATATGTTGAAGTTTTGTTGAGAAGGAGGATGGAGAGTAGATC
AGCAAAGTTCCAAGAGCAAAATTACAGTGTGTTAGAGTGTGGGGGGAAATCAGTCGTATT
TTTTCCCTACATGGGATACAGCACTGTGAAATCCCATCTTCAACTGAAGGCCCTACAGTT
CTCCTAAAACATAGTTCTTTGTTTCTTTCTTTAACAAAGTTTAAGCTAGTGTTAATAAAT
TAAAAAGAGAAATTGCTTGTCTGTCCACTTCAGCTTTGTTTTATGCCCATTTCATATTGT
TGTCTGTGTTGTAATTCATACTTTTGATACCATTTCTGATGTGTAAAATTGGTTGTCTTG
TAAATATCTTATAAAGAGTTCAATTGTAAATAAACTATTGTGGCTGTTAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-190, + strand, RNAz p=0.669522
               

               
               870-1023, + strand, RNAz p=0.967355

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-190, + strand, RNAz p=0.669522
               

               
               870-1023, + strand, RNAz p=0.967355

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               986-1052, + strand, RNAmicro p=0.99959

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               986-1052, + strand, RNAmicro p=0.99959

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               3' of CR749360, +
               

               
               3' of CR749360, +

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of CR749360, +
               

               
               3' of CR749360, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-272, gnl|bosTau2|chr19 (34471901-34471626)
               

               
               1-272, gnl|Hg17|chr17 (35545364-35545651)
               

               
               1-272, gnl|Mm7|chr11 (98915695-98916004)
               


               
               294-1250, gnl|bosTau2|chr19 (34471648-34470700)
               

               
               294-1250, gnl|Hg17|chr17 (35545629-35546568)
               

               
               294-1250, gnl|Mm7|chr11 (98915938-98916893)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-272, gnl|bosTau2|chr19 (34471901-34471626)
               

               
               1-272, gnl|Hg17|chr17 (35545364-35545651)
               

               
               1-272, gnl|Mm7|chr11 (98915695-98916004)
               


               
               294-1250, gnl|bosTau2|chr19 (34471648-34470700)
               

               
               294-1250, gnl|Hg17|chr17 (35545629-35546568)
               

               
               294-1250, gnl|Mm7|chr11 (98915938-98916893)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               spl (0.572738)
               

               
               thg (0.253582)
               

               
               cbe (0.239234)
               

               
               ebs (0.236602)
               

               
               mgp (0.230681)
               

               
               ecc (0.23007)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               ret (0.128733)
               

               
               cbl (0.114797)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.572738)
               

               
               thg (0.253582)
               

               
               cbe (0.239234)
               

               
               ebs (0.236602)
               

               
               mgp (0.230681)
               

               
               ecc (0.23007)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               ret (0.128733)
               

               
               cbl (0.114797)

	40-190, + strand, RNAz p=0.669522
	870-1023, + strand, RNAz p=0.967355

	1-272, gnl\|bosTau2\|chr19 (34471901-34471626)
	1-272, gnl\|Hg17\|chr17 (35545364-35545651)
	1-272, gnl\|Mm7\|chr11 (98915695-98916004)

	294-1250, gnl\|bosTau2\|chr19 (34471648-34470700)
	294-1250, gnl\|Hg17\|chr17 (35545629-35546568)
	294-1250, gnl\|Mm7\|chr11 (98915938-98916893)

	spl (0.572738)
	thg (0.253582)
	cbe (0.239234)
	ebs (0.236602)
	mgp (0.230681)
	ecc (0.23007)
	aor (0.195274)
	col (0.195008)
	duo (0.172801)
	fhi (0.169578)
	fat (0.147427)
	liv (0.146284)
	hyp (0.142837)
	nca (0.136874)
	ssp (0.13552)
	ret (0.128733)
	cbl (0.114797)