Non-Coding RNA Search

Ss1.1-Pig4-TMW8064K21.5

Sequence:


               
               GACATTTTCCAGTGACCGCTGGATTGTTTTAATTTCCCCAACTTTTCTCTTTTTTTCCCC
CACAAATAAGTTTCACTCTTGGGCGATTTTCTCCACTTGTTTAAGATAATGTACTATTCT
CACAGGTCCAGCTTTCACAACCTGCCCCCTGGCTCGCCTCACCCCGCACCCCATTCCTGC
CAGTGAGTCCCTACCTGTGTCCGGTCAGGTGGTTCCCCGCGTCCCCACCAAGAACGCAAA
GGCTGTGCATTGGGGCGCTTAAGTCTGGACTCACCACTTCAACCTGCGGGGATTGGGGGG
GCACTTGGAACGCTTCTGTGTAAATTTGATAGAACCTACTGCAACATAAAGGTGTTCAGA
ATGAATTTCGATAGGTAATGAATTGCCGTTAAGGAATAAACACCCTCTATCACCATGTGA
GTTCTCCCCCTTCCTCCAGCATCTTGATCCTGGTCTCAGAAACCAGAATAAAAACCGCCC
CCTCCCTTGAGACGGAGGGAACTGGTGTCCGGTCCTGACGTCACTCCTGGTGAAAAATGT
ATTTTTTATGAATGGAAGACGTGGGTGGGGGCCGGAGGAGGGGCGGACTCTGTGATTGTG
AGACCCTTTTCTGTAACTGCGGCCACTTTGAAAATTGTATTCTGCTGGGACTCTGCCAGC
CGTCACCACCCGGGTTTTAATTGTACTCTTTCTTCCATCCTTCGGTCCGCTTTGTGCTTT
GTCTGGGGAAGGTGGGGCGGCTGGCTCAGACTTGGGGAGTTTGTTCTTTTGCGGGACGGG
CACTCCAGTTTTCTTTCCCGTGAAGTTTGTTTCAGCTGCCAATCACTTCATTCCGCGGTT
GTTGCGATTTCAAAATAAAAGGAAGCATATTGAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACATTTTCCAGTGACCGCTGGATTGTTTTAATTTCCCCAACTTTTCTCTTTTTTTCCCC
CACAAATAAGTTTCACTCTTGGGCGATTTTCTCCACTTGTTTAAGATAATGTACTATTCT
CACAGGTCCAGCTTTCACAACCTGCCCCCTGGCTCGCCTCACCCCGCACCCCATTCCTGC
CAGTGAGTCCCTACCTGTGTCCGGTCAGGTGGTTCCCCGCGTCCCCACCAAGAACGCAAA
GGCTGTGCATTGGGGCGCTTAAGTCTGGACTCACCACTTCAACCTGCGGGGATTGGGGGG
GCACTTGGAACGCTTCTGTGTAAATTTGATAGAACCTACTGCAACATAAAGGTGTTCAGA
ATGAATTTCGATAGGTAATGAATTGCCGTTAAGGAATAAACACCCTCTATCACCATGTGA
GTTCTCCCCCTTCCTCCAGCATCTTGATCCTGGTCTCAGAAACCAGAATAAAAACCGCCC
CCTCCCTTGAGACGGAGGGAACTGGTGTCCGGTCCTGACGTCACTCCTGGTGAAAAATGT
ATTTTTTATGAATGGAAGACGTGGGTGGGGGCCGGAGGAGGGGCGGACTCTGTGATTGTG
AGACCCTTTTCTGTAACTGCGGCCACTTTGAAAATTGTATTCTGCTGGGACTCTGCCAGC
CGTCACCACCCGGGTTTTAATTGTACTCTTTCTTCCATCCTTCGGTCCGCTTTGTGCTTT
GTCTGGGGAAGGTGGGGCGGCTGGCTCAGACTTGGGGAGTTTGTTCTTTTGCGGGACGGG
CACTCCAGTTTTCTTTCCCGTGAAGTTTGTTTCAGCTGCCAATCACTTCATTCCGCGGTT
GTTGCGATTTCAAAATAAAAGGAAGCATATTGAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-875, gnl|bosTau2|chr19 (30294529-30293630)
               

               
               1-875, gnl|Hg17|chr17 (44487547-44488501)
               

               
               1-875, gnl|Mm7|chr11 (96067003-96066202)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-875, gnl|bosTau2|chr19 (30294529-30293630)
               

               
               1-875, gnl|Hg17|chr17 (44487547-44488501)
               

               
               1-875, gnl|Mm7|chr11 (96067003-96066202)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ebs (0.118301)
               

               
               eje (0.0988338)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)
               

               
               eje (0.0988338)

	1-875, gnl\|bosTau2\|chr19 (30294529-30293630)
	1-875, gnl\|Hg17\|chr17 (44487547-44488501)
	1-875, gnl\|Mm7\|chr11 (96067003-96066202)