Non-Coding RNA Search

Ss1.1-Pig4-TMW8064L09.3

Sequence:


               
               TAGTAAGTAAACATCGTCCAACTTTTCCGAAGTATAATACCGTTTCCAAGCAGTATATTT
CAAACACCCTGCCATCCGATGCACCCAAGAAGAGGCGTGCACCGCTGCCTCCAATGCCGG
GGTCTCAGAGCGCCCCCCAGGACCTTGCCCACATCCAGGAGAGGCCAGCTTCCTGTGTGG
TGAAATCCACAAGCCTGGATGAAACAGATGAGAATTCCTGCGGAGCAGGCATAGTGAGGA
CAGGCTCTCTGCAGCTCAGTAGCAGATCCACTGGGAATTCATCTTTGAAAAGGACAAAGC
GAAAAGCACCTTCCCCACCCTCCAAAATAGCCCTGCAACAAAGTGATGAAAACAGTCACG
TAACTGCCCTGCAGTCAGTACCTGCAGTTCCTCCAGACAGTGTTTTAGAAGCAAACTCTT
CCGAGGGCCTGTCCAGCCCAGCTGGAATAAGCTCTGATTATAGCCTTGAGGAGATAGATG
AAAAGGAAGAACTGAGTGAAGTGCCTAGAGATGAGGCTGAAAATACTTCTCTGAAGTCAC
AAGATATTCCTATTGGTTCTTCTGATATAATAAATACACTGAAAAATGATCCTGACTCAG
CCCTTGGCAGTAGTACTGGAAAGTCCTCACAAAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGTAAGTAAACATCGTCCAACTTTTCCGAAGTATAATACCGTTTCCAAGCAGTATATTT
CAAACACCCTGCCATCCGATGCACCCAAGAAGAGGCGTGCACCGCTGCCTCCAATGCCGG
GGTCTCAGAGCGCCCCCCAGGACCTTGCCCACATCCAGGAGAGGCCAGCTTCCTGTGTGG
TGAAATCCACAAGCCTGGATGAAACAGATGAGAATTCCTGCGGAGCAGGCATAGTGAGGA
CAGGCTCTCTGCAGCTCAGTAGCAGATCCACTGGGAATTCATCTTTGAAAAGGACAAAGC
GAAAAGCACCTTCCCCACCCTCCAAAATAGCCCTGCAACAAAGTGATGAAAACAGTCACG
TAACTGCCCTGCAGTCAGTACCTGCAGTTCCTCCAGACAGTGTTTTAGAAGCAAACTCTT
CCGAGGGCCTGTCCAGCCCAGCTGGAATAAGCTCTGATTATAGCCTTGAGGAGATAGATG
AAAAGGAAGAACTGAGTGAAGTGCCTAGAGATGAGGCTGAAAATACTTCTCTGAAGTCAC
AAGATATTCCTATTGGTTCTTCTGATATAATAAATACACTGAAAAATGATCCTGACTCAG
CCCTTGGCAGTAGTACTGGAAAGTCCTCACAAAACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61857468|ref|XP_613087.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61857468|ref|XP_613087.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               482-601, - strand, RNAz p=0.994458

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               482-601, - strand, RNAz p=0.994458

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-212, gnl|bosTau2|chr2 (23122854-23123065)
               

               
               1-212, gnl|canFam2|chr36 (12934673-12934443)
               

               
               1-212, gnl|dasNov1|scaffold_6197 (50902-51132)
               

               
               1-212, gnl|echTel1|scaffold_322224 (695-925)
               

               
               1-212, gnl|hg17|chr12 (9744400-9744629)
               

               
               1-212, gnl|Hg17|chr2 (165404303-165404092)
               

               
               1-212, gnl|loxAfr1|scaffold_72642 (492-722)
               

               
               1-212, gnl|mm7|chr2 (65056669-65056453)
               

               
               1-212, gnl|Mm7|chr2 (65056641-65056442)
               

               
               1-212, gnl|oryCun1|scaffold_214748 (119061-119291)
               

               
               1-212, gnl|panTro1|chrUn_random (35998325-35998551)
               

               
               1-212, gnl|rheMac2|chr11 (9920824-9921053)
               


               
               442-636, gnl|bosTau2|chr5 (59437647-59437467)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-212, gnl|bosTau2|chr2 (23122854-23123065)
               

               
               1-212, gnl|canFam2|chr36 (12934673-12934443)
               

               
               1-212, gnl|dasNov1|scaffold_6197 (50902-51132)
               

               
               1-212, gnl|echTel1|scaffold_322224 (695-925)
               

               
               1-212, gnl|hg17|chr12 (9744400-9744629)
               

               
               1-212, gnl|Hg17|chr2 (165404303-165404092)
               

               
               1-212, gnl|loxAfr1|scaffold_72642 (492-722)
               

               
               1-212, gnl|mm7|chr2 (65056669-65056453)
               

               
               1-212, gnl|Mm7|chr2 (65056641-65056442)
               

               
               1-212, gnl|oryCun1|scaffold_214748 (119061-119291)
               

               
               1-212, gnl|panTro1|chrUn_random (35998325-35998551)
               

               
               1-212, gnl|rheMac2|chr11 (9920824-9921053)
               


               
               442-636, gnl|bosTau2|chr5 (59437647-59437467)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               rec (0.17307)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.17307)

	1-212, gnl\|bosTau2\|chr2 (23122854-23123065)
	1-212, gnl\|canFam2\|chr36 (12934673-12934443)
	1-212, gnl\|dasNov1\|scaffold_6197 (50902-51132)
	1-212, gnl\|echTel1\|scaffold_322224 (695-925)
	1-212, gnl\|hg17\|chr12 (9744400-9744629)
	1-212, gnl\|Hg17\|chr2 (165404303-165404092)
	1-212, gnl\|loxAfr1\|scaffold_72642 (492-722)
	1-212, gnl\|mm7\|chr2 (65056669-65056453)
	1-212, gnl\|Mm7\|chr2 (65056641-65056442)
	1-212, gnl\|oryCun1\|scaffold_214748 (119061-119291)
	1-212, gnl\|panTro1\|chrUn_random (35998325-35998551)
	1-212, gnl\|rheMac2\|chr11 (9920824-9921053)

	442-636, gnl\|bosTau2\|chr5 (59437647-59437467)