Non-Coding RNA Search

Ss1.1-Pig4-TMW8064M05.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTCAGCGAAGGGTCAGGTTTTAATGTCCCGGTCC
TCGGGCCCGGGCTGTCCAGCGCCCCGGCCGTCCCCCGCAGCCTTGCAGCTCACTCCGGTG
GCGGCCGTCCCGCCTCATCGGGCCCTTCGGCCGCGGCTGTTCCGTCATCCTCGGGCACGA
GTTCCACGTCCAGCTCGAGCTGGCCCATGTAGAGGCCGACGGCACAAGCCCACAGCAGGC
CGGCGGCCAGCACGGCGCCCACTCCCGCGGCCGCGCCCCCCAGGGACAGCTGCATGGGTC
CCCGCAGCGCCGCCAGGCCCACCACGTAGGAGGCACCGCCCCACACCACGCACAGGCCGC
CCAGCAGGAAGAAGCCATAAGCAGCTTCACGCCCCATATCACTCTGCATGAAAGAGATGA
CCCCGATGCCCGATGCCAGGAGGCCATTGCGGAACCAGGAAAGGAAGGCTGTCTCATGAG
CCTTCCGAAGGAGCCAGGCATCTGCGCGATCCAGCTCGGACACCGGGGGCGGCGAAGCCC
CAGAGCGGGGGCCGTGGCCAGGGGCAAAGGACCCCCGGGCGCCCCCGCTCCGGGGCCGCG
GAGGCGGCAGCAGCGCCCCCCGGAAGCGGAGTCGGGCTAGGCGGGCAGCCCGAGCCCACC
ACCAGCCACCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTCAGCGAAGGGTCAGGTTTTAATGTCCCGGTCC
TCGGGCCCGGGCTGTCCAGCGCCCCGGCCGTCCCCCGCAGCCTTGCAGCTCACTCCGGTG
GCGGCCGTCCCGCCTCATCGGGCCCTTCGGCCGCGGCTGTTCCGTCATCCTCGGGCACGA
GTTCCACGTCCAGCTCGAGCTGGCCCATGTAGAGGCCGACGGCACAAGCCCACAGCAGGC
CGGCGGCCAGCACGGCGCCCACTCCCGCGGCCGCGCCCCCCAGGGACAGCTGCATGGGTC
CCCGCAGCGCCGCCAGGCCCACCACGTAGGAGGCACCGCCCCACACCACGCACAGGCCGC
CCAGCAGGAAGAAGCCATAAGCAGCTTCACGCCCCATATCACTCTGCATGAAAGAGATGA
CCCCGATGCCCGATGCCAGGAGGCCATTGCGGAACCAGGAAAGGAAGGCTGTCTCATGAG
CCTTCCGAAGGAGCCAGGCATCTGCGCGATCCAGCTCGGACACCGGGGGCGGCGAAGCCC
CAGAGCGGGGGCCGTGGCCAGGGGCAAAGGACCCCCGGGCGCCCCCGCTCCGGGGCCGCG
GAGGCGGCAGCAGCGCCCCCCGGAAGCGGAGTCGGGCTAGGCGGGCAGCCCGAGCCCACC
ACCAGCCACCTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9NX00_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9NX00_HUMAN

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               33-376, gnl|bosTau2|chr18 (47057182-47057517)
               

               
               33-376, gnl|Hg17|chr19 (52241017-52241351)
               

               
               33-376, gnl|Mm7|chr7 (14217530-14217204)
               


               
               563-672, gnl|bosTau2|chr10 (14341208-14341099)
               

               
               563-672, gnl|Hg17|chr19 (52243599-52243708)
               

               
               563-672, gnl|Mm7|chr7 (14215120-14215011)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               33-376, gnl|bosTau2|chr18 (47057182-47057517)
               

               
               33-376, gnl|Hg17|chr19 (52241017-52241351)
               

               
               33-376, gnl|Mm7|chr7 (14217530-14217204)
               


               
               563-672, gnl|bosTau2|chr10 (14341208-14341099)
               

               
               563-672, gnl|Hg17|chr19 (52243599-52243708)
               

               
               563-672, gnl|Mm7|chr7 (14215120-14215011)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               hyp (0.285673)
               

               
               cga (0.279096)
               

               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               ebs (0.236602)
               

               
               med (0.232504)
               

               
               col (0.195008)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               cov (0.132153)
               

               
               cly (0.120642)

Expressed library(ies): 13 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.285673)
               

               
               cga (0.279096)
               

               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               ebs (0.236602)
               

               
               med (0.232504)
               

               
               col (0.195008)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               cov (0.132153)
               

               
               cly (0.120642)

	33-376, gnl\|bosTau2\|chr18 (47057182-47057517)
	33-376, gnl\|Hg17\|chr19 (52241017-52241351)
	33-376, gnl\|Mm7\|chr7 (14217530-14217204)

	563-672, gnl\|bosTau2\|chr10 (14341208-14341099)
	563-672, gnl\|Hg17\|chr19 (52243599-52243708)
	563-672, gnl\|Mm7\|chr7 (14215120-14215011)

	hyp (0.285673)
	cga (0.279096)
	fce (0.271592)
	pla (0.267344)
	ebs (0.236602)
	med (0.232504)
	col (0.195008)
	ton (0.1755)
	fbs (0.175346)
	eye (0.170503)
	fhi (0.169578)
	cov (0.132153)
	cly (0.120642)