Non-Coding RNA Search

Ss1.1-Pig4-TMW8064M06.3

Sequence:


               
               TTTTTTTTTTTTTCTACTTCTTCCAAGCTGTCTTATCTCAGACCCCTTCCAGTCGAGGAA
CTAGAATCAGCAGGGAGAGCTGGAAGCTTTCCTACTGCTTCCCTCAGAGCAAAGAGGCAA
TGGTTCTCTCCACCGTCCCCCACTGGATCCCACGCAGAGGGAGAGGCTCTGGGCCAAGAT
GAGCCAGCACAGACTCTAAACAGAGAGTCCCACGGGCCCTCCAACCTCAGGTGACCAGCT
GATGAGGATTGTCATGTTTAAGCTACCGGTGCGCAACCAGCTCTCCATAAATGCCTTTGT
GAGCTGAAGAGAGATTGGCAGAGTCAAAGCAAAGACAGGGCTCTGGCTTTCCAGGGAAAG
CAGCAAACAGCCAGCCCCTAGATGAGCCTCAGAGAAGCCTCCTCTCCTCGCTGCTCTTCA
GCACCTGTCCCAGAAGTCACCGCCACTGTGGATCCCTGGGCTGGGATCAGACTTGATCTG
GTGTAGAGGCGCTCTCCCCACACCAAGCTGTTGTAGTGTTTGGATTTGCATTCCAGCCCT
TGGGAAGGGGTCCTGAGGGCCACCACTAAGGAGTGGAGGGGGGGGTTCCTTCCTGTTTCC
GTTATGCCATAGCCCCTTTACCTGGTTCTAAAGAGCCACTCTGACCCAGGTCCCCTCCCA
GCAGTCCCATCTTCTCCAACCTGTCCCTGCACAGGTCCCTTGCATGCTCACCTCCGCTCT
CCTCCCTTCCCCCTTTTCCTCCTATGGAAACAGTATTTCTTTCTGTCTGTTCCTTCTTTG
GCCCAGACCCAGCCTGACTAACGATGACCATTTCTTAGGCTCAGCTCTTGAAACGGGACT
GATTGTCTTCACTTCAGCCAGCAGCACCGTCTTCGGTGTTTCCGGGGCCCGGGGACTGTT
GGGAGGAAAGCGGAGAACCAGGCCTGACCAGACCTGAGTTAACTAACCCTCAGAGGTGGA
TCTAAGACATCCTCGAGACCCGAGCATTTCTCCTGGGATAGGGGACCAGAGGGGCTTAGA
ACGTGGCATAAGAAAAAGGAGAAGTCACCGAAAGGATGTCAGTGTTTCTCCCTCGGCACG
GGTTGGGTTTTCCAAAGTCACACGTTAGAGGGTCAGCATTTACAGTGAATATGTAATAAA
TACGAGGCGGCCATGCTGGTCTGGGCCCCTCTGCTTTACAGCCTTGTTCCTTTTCAGCCC
ATCGAAACCCAGGTTAGGGGGTCTCAGAAAATGGGGGCAGGGGAGATCCCTGTGGTTTTT
GGCACAGTTGTTAATTTCACTGGGATTTTGAATTTTCTGTCTGAACACAAAGCCTGTTCT
AGTCCTAGCGGGACACTGGGGGGTGGGGGTGGGGGAGGATGCTGTAATGAAACTGGTTAG
TGTTGTCTTAATATTGTTGACAATTCTGTAAAGTTCCTTTTTATGAATATTTCTGTTTAA
GCTATTTCACCTTTGTTTTGAAATCCTTCCCTTTTAAGGAGAAAATGTGACACTTGTGAA
AAAGCTTGTAAGAAAGCCCCTCTTCCACAACCCCTTTTTTTTTCCTTTAAATCTCCTTTA
AATGACAAATCTAGGTAATTAAGGTTGTGAATTTTTATTTTTTGCTTTGTTTTTAATGAA
CATTTGTCTTTCAGAATAGGACTGTGTGATGTTTAAATGGCAAAAACAAAACATGATTTT
GTGCAATTAACAAAAGGCTACTGCAAACAAAATAAAACGTTTCTTGATAACACAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTCTACTTCTTCCAAGCTGTCTTATCTCAGACCCCTTCCAGTCGAGGAA
CTAGAATCAGCAGGGAGAGCTGGAAGCTTTCCTACTGCTTCCCTCAGAGCAAAGAGGCAA
TGGTTCTCTCCACCGTCCCCCACTGGATCCCACGCAGAGGGAGAGGCTCTGGGCCAAGAT
GAGCCAGCACAGACTCTAAACAGAGAGTCCCACGGGCCCTCCAACCTCAGGTGACCAGCT
GATGAGGATTGTCATGTTTAAGCTACCGGTGCGCAACCAGCTCTCCATAAATGCCTTTGT
GAGCTGAAGAGAGATTGGCAGAGTCAAAGCAAAGACAGGGCTCTGGCTTTCCAGGGAAAG
CAGCAAACAGCCAGCCCCTAGATGAGCCTCAGAGAAGCCTCCTCTCCTCGCTGCTCTTCA
GCACCTGTCCCAGAAGTCACCGCCACTGTGGATCCCTGGGCTGGGATCAGACTTGATCTG
GTGTAGAGGCGCTCTCCCCACACCAAGCTGTTGTAGTGTTTGGATTTGCATTCCAGCCCT
TGGGAAGGGGTCCTGAGGGCCACCACTAAGGAGTGGAGGGGGGGGTTCCTTCCTGTTTCC
GTTATGCCATAGCCCCTTTACCTGGTTCTAAAGAGCCACTCTGACCCAGGTCCCCTCCCA
GCAGTCCCATCTTCTCCAACCTGTCCCTGCACAGGTCCCTTGCATGCTCACCTCCGCTCT
CCTCCCTTCCCCCTTTTCCTCCTATGGAAACAGTATTTCTTTCTGTCTGTTCCTTCTTTG
GCCCAGACCCAGCCTGACTAACGATGACCATTTCTTAGGCTCAGCTCTTGAAACGGGACT
GATTGTCTTCACTTCAGCCAGCAGCACCGTCTTCGGTGTTTCCGGGGCCCGGGGACTGTT
GGGAGGAAAGCGGAGAACCAGGCCTGACCAGACCTGAGTTAACTAACCCTCAGAGGTGGA
TCTAAGACATCCTCGAGACCCGAGCATTTCTCCTGGGATAGGGGACCAGAGGGGCTTAGA
ACGTGGCATAAGAAAAAGGAGAAGTCACCGAAAGGATGTCAGTGTTTCTCCCTCGGCACG
GGTTGGGTTTTCCAAAGTCACACGTTAGAGGGTCAGCATTTACAGTGAATATGTAATAAA
TACGAGGCGGCCATGCTGGTCTGGGCCCCTCTGCTTTACAGCCTTGTTCCTTTTCAGCCC
ATCGAAACCCAGGTTAGGGGGTCTCAGAAAATGGGGGCAGGGGAGATCCCTGTGGTTTTT
GGCACAGTTGTTAATTTCACTGGGATTTTGAATTTTCTGTCTGAACACAAAGCCTGTTCT
AGTCCTAGCGGGACACTGGGGGGTGGGGGTGGGGGAGGATGCTGTAATGAAACTGGTTAG
TGTTGTCTTAATATTGTTGACAATTCTGTAAAGTTCCTTTTTATGAATATTTCTGTTTAA
GCTATTTCACCTTTGTTTTGAAATCCTTCCCTTTTAAGGAGAAAATGTGACACTTGTGAA
AAAGCTTGTAAGAAAGCCCCTCTTCCACAACCCCTTTTTTTTTCCTTTAAATCTCCTTTA
AATGACAAATCTAGGTAATTAAGGTTGTGAATTTTTATTTTTTGCTTTGTTTTTAATGAA
CATTTGTCTTTCAGAATAGGACTGTGTGATGTTTAAATGGCAAAAACAAAACATGATTTT
GTGCAATTAACAAAAGGCTACTGCAAACAAAATAAAACGTTTCTTGATAACACAAAAAAA

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

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               3-161, - strand, RNAz p=0.965623
               

               
               321-440, - strand, RNAz p=0.551529
               

               
               498-644, - strand, RNAz p=0.651898
               

               
               685-840, - strand, RNAz p=0.862563

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-161, - strand, RNAz p=0.965623
               

               
               321-440, - strand, RNAz p=0.551529
               

               
               498-644, - strand, RNAz p=0.651898
               

               
               685-840, - strand, RNAz p=0.862563

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               55-180, - strand, RNAmicro p=0.997836

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               55-180, - strand, RNAmicro p=0.997836

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               3-474, gnl|bosTau2|chr25 (4707068-4706604)
               

               
               3-474, gnl|Hg17|chr16 (4794890-4794451)
               


               
               498-1735, gnl|bosTau2|chr25 (4706603-4705352)
               

               
               498-1735, gnl|Hg17|chr16 (4794450-4793204)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-474, gnl|bosTau2|chr25 (4707068-4706604)
               

               
               3-474, gnl|Hg17|chr16 (4794890-4794451)
               


               
               498-1735, gnl|bosTau2|chr25 (4706603-4705352)
               

               
               498-1735, gnl|Hg17|chr16 (4794450-4793204)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               pro (0.512033)
               

               
               nje (0.33184)
               

               
               cte (0.29274)
               

               
               cga (0.279096)
               

               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               nms (0.213858)
               

               
               nep (0.183925)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               nje (0.33184)
               

               
               cte (0.29274)
               

               
               cga (0.279096)
               

               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               nms (0.213858)
               

               
               nep (0.183925)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	3-161, - strand, RNAz p=0.965623
	321-440, - strand, RNAz p=0.551529
	498-644, - strand, RNAz p=0.651898
	685-840, - strand, RNAz p=0.862563

	3-474, gnl\|bosTau2\|chr25 (4707068-4706604)
	3-474, gnl\|Hg17\|chr16 (4794890-4794451)

	498-1735, gnl\|bosTau2\|chr25 (4706603-4705352)
	498-1735, gnl\|Hg17\|chr16 (4794450-4793204)

	pro (0.512033)
	nje (0.33184)
	cte (0.29274)
	cga (0.279096)
	fce (0.271592)
	pla (0.267344)
	nms (0.213858)
	nep (0.183925)
	sin (0.174948)
	fhi (0.169578)
	fco (0.157208)
	fat (0.147427)
	hyp (0.142837)
	pty (0.142714)
	lnt (0.142308)
	cst (0.140036)
	eep (0.122564)
	ebs (0.118301)
	ecc (0.115035)