Non-Coding RNA Search

Ss1.1-Pig4-TMW8064M07.3

Sequence:


               
               TAATTTAGTATCATCCATGGGTCTAAATAGTGTGTTGTGGGAGTTCTCTTTCGGCACAGT
GGGTTAAGGATCCAGTGTTGTCATTGCAGCAGCTTGGGCTCCTAAGGCCAGGTTCAATCT
CTGGCCCAGAAACTTCCACATGCTGCTGGCATCCCCCCCAAAAAACAAAACAAAACAAAA
CAACAGTATATTATGTCCTGAAATAAATACAGCTCAGTCTGTCATCTTGAGCTATTTTGT
TGAGGATTTGAGAACAACTTAATCATTCACTGGCTTTTCCTGGGGTCTTATCATCTGTGA
GTGGCTCATTTGTGTGTGTCTAAATCTATTATAACTCTCTTGCAGCCCGTGCACAACATG
GAATACCTACGATCTGATGATAACCAAAAGATGATTGCATATTGGAAAAGCATGACTCAT
GATACAGTATTAATCCTTTAATAGTATTGAACCTTTAACCAGTCAATCCCAAATTCACCA
GCAGGTTTAGAACACTGCTGCCTTAGCCAATAAAGGGCACAGCTTTTCTATGTGATTAAG
GCAAGAAGTCTCCAAGAGAGACTGTTACCTTCTAAAATACGAAGTTATGCCTAATTTACT
GCAGGTGGCCAAAACTGAAACTACTATTTTTCAAAAAGTATTCAGTAACTTAAAATACGC
ACCCAGAAGACTGAAAAGACACTGCTACAATAATAGTGCTGTTTATGTGTTTCTCTATTG
CATACATGAATGAATAGTACTTTTTTTTTTAATTTTAAGCTACAAGATCAGCTAGCACTG
GTAAACTTACAGAGGCGTAGTTGATTCCTAATATGTAATATGATTTTATTTTAACCACAT
AGTCACACCAGAAAGCCCTCAAAATAAACATCTACTACTCAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAATTTAGTATCATCCATGGGTCTAAATAGTGTGTTGTGGGAGTTCTCTTTCGGCACAGT
GGGTTAAGGATCCAGTGTTGTCATTGCAGCAGCTTGGGCTCCTAAGGCCAGGTTCAATCT
CTGGCCCAGAAACTTCCACATGCTGCTGGCATCCCCCCCAAAAAACAAAACAAAACAAAA
CAACAGTATATTATGTCCTGAAATAAATACAGCTCAGTCTGTCATCTTGAGCTATTTTGT
TGAGGATTTGAGAACAACTTAATCATTCACTGGCTTTTCCTGGGGTCTTATCATCTGTGA
GTGGCTCATTTGTGTGTGTCTAAATCTATTATAACTCTCTTGCAGCCCGTGCACAACATG
GAATACCTACGATCTGATGATAACCAAAAGATGATTGCATATTGGAAAAGCATGACTCAT
GATACAGTATTAATCCTTTAATAGTATTGAACCTTTAACCAGTCAATCCCAAATTCACCA
GCAGGTTTAGAACACTGCTGCCTTAGCCAATAAAGGGCACAGCTTTTCTATGTGATTAAG
GCAAGAAGTCTCCAAGAGAGACTGTTACCTTCTAAAATACGAAGTTATGCCTAATTTACT
GCAGGTGGCCAAAACTGAAACTACTATTTTTCAAAAAGTATTCAGTAACTTAAAATACGC
ACCCAGAAGACTGAAAAGACACTGCTACAATAATAGTGCTGTTTATGTGTTTCTCTATTG
CATACATGAATGAATAGTACTTTTTTTTTTAATTTTAAGCTACAAGATCAGCTAGCACTG
GTAAACTTACAGAGGCGTAGTTGATTCCTAATATGTAATATGATTTTATTTTAACCACAT
AGTCACACCAGAAAGCCCTCAAAATAAACATCTACTACTCAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               182-881, gnl|bosTau2|chr15 (15117651-15116941)
               

               
               182-881, gnl|Hg17|chr11 (117785731-117786414)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               182-881, gnl|bosTau2|chr15 (15117651-15116941)
               

               
               182-881, gnl|Hg17|chr11 (117785731-117786414)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               fhi (0.339155)
               

               
               ece (0.229305)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               sug (0.127291)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.339155)
               

               
               ece (0.229305)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               sug (0.127291)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

	182-881, gnl\|bosTau2\|chr15 (15117651-15116941)
	182-881, gnl\|Hg17\|chr11 (117785731-117786414)

	fhi (0.339155)
	ece (0.229305)
	spl (0.143184)
	hlv (0.139256)
	sug (0.127291)
	spc (0.113366)
	ldo (0.0970026)